from .io import read_tif_2Dor3D import matplotlib.pyplot as plt import logging import numpy as np def get_foto1_data(flags, p1): foto1_filename = flags.get_existing_filename_in_coor(p1.metadata.ex_name, ".morpho.tif") if foto1_filename is not None: foto1_data, _ = read_tif_2Dor3D(foto1_filename).astype(np.int32) else: logging.getLogger("VIEW").warning(f"Could not find {foto1_filename}. Using frame averaged data instead") foto1_data = p1.foto1 return foto1_data def show_photo(foto1_data): if not plt.isinteractive(): plt.ion() fig, ax = plt.subplots() ax.imshow(foto1_data.swapaxes(0, 1), cmap="gray", origin="lower") fig.canvas.draw() plt.show(block=False) def calc_foto1(raw1): return raw1[:, :, 1:6].mean(axis=2)