# -*- coding: utf-8 -*- """ Created on Wed May 30 10:13:47 2018 @author: Giovanni Galizia copy of master in C:\\Users\\Giovanni Galizia\\Documents\\Code\\ShareWinXP\\WindowsExchange\\IDL_Data\\spont_activity\\00_copy_IDL changed May 2019 to run Hanna Apis2018 as sample data on mac gio: run in environment idl_py """ ### gio 25.5.2019: "from view.idl_translation_core import View_gr_reports " does not work, # direct import does: import View_gr_reports as... # in spyder, anaconca env idl_py, mac. #from view.idl_translation_core import View_gr_reports as View_gr_reports, IDL_flags as IDL_flags import View_gr_reports as View_gr_reports, IDL_flags as IDL_flags from sys import platform #show images inline: #%matplotlib inline #show images in extra window #%matplotlib qt def Set_my_flags(flag): # use this to change any flags that are important locally #flag.STG_reporttag = '030725bR' flag.LE_loadExp = 3 flag.CSM_Movement = 0 # 2 for movement correction on the spot - is slow! flag.VIEW_batchmode = 1 # fo flag.LE_CalcMethod = 3900 flag.VIEW_ReportMethod = 12 #10 for overviews, 12 for movies flag.SO_Method = 10 flag.SO_individualScale = 3 flag.SO_MV_scalemax = 18.0 flag.SO_MV_scalemin = -2.0 flag.SO_withinArea= 0 flag.CTV_firstframe = 18 flag.CTV_lastframe = 22 flag.CTV_Method = 35 #22 flag.RM_FotoOk = 1 flag.CTV_scalebar = 1 flag.Signal_FilterSpaceFlag = 0 flag.mv_individualScale = 3 return flag def ChooseFileFolder(): import tkinter as tk from tkinter.filedialog import askopenfilenames # Choose raw files root = tk.Tk() root.withdraw() # so that windows closes after file chosen root.attributes('-topmost', True) # the mac system does not accept filetypes, therefore ask for system if platform == 'darwin': filenames = askopenfilenames( parent=root, title='Select one or more settings files (*.settings.xls)', ) # ask user to choose file else: filenames = askopenfilenames( parent=root, title='Select one or more settings files', filetypes=[('settings files', '*.settings.xls'), ('all files', '*')] ) # ask user to choose file return filenames def Apis2018_summer(flag): #list all animals to be processed flag.SO_MV_scalemax =3.000 flag.SO_MV_scalemin = -2.000 flag.STG_ReportTag ='HS_bee_PELM_180406a' (p1, flag) = gr_HS_bee_PELM_180406a(flag) #gr_takefromlist, 'HS_bee_PELM_180406a', 2 # flag.SO_MV_scalemax =3.000 # flag.SO_MV_scalemin = -2.000 # flag.stg_reporttag ='HS_bee_OXON_PELM_180409' # gr_HS_bee_OXON_PELM_180409 # #gr_takefromlist, 'HS_bee_OXON_PELM_180409', 2 # # flag.SO_MV_scalemax =3.000 # flag.SO_MV_scalemin = -2.000 # flag.stg_reporttag ='HS_bee_OXON_PELM_180411' # gr_HS_bee_OXON_PELM_180411 # #gr_takefromlist, 'HS_bee_OXON_PELM_180411', 2 # # flag.SO_MV_scalemax =3.000 # flag.SO_MV_scalemin = -2.000 # flag.stg_reporttag ='HS_bee_PELM_180416b' # gr_HS_bee_PELM_180416b # #gr_takefromlist, 'HS_bee_PELM_180416b', 2 # # flag.SO_MV_scalemax =3.000 # flag.SO_MV_scalemin = -2.000 # flag.stg_reporttag ='HS_bee_OXON_PELM_180417' # gr_HS_bee_OXON_PELM_180417 # #gr_takefromlist, 'HS_bee_OXON_PELM_180417', 2 # # flag.SO_MV_scalemax =3.000 # flag.SO_MV_scalemin = -2.000 # flag.stg_reporttag ='HS_bee_PELM_180418' # gr_HS_bee_PELM_180418 # #gr_takefromlist, 'HS_bee_PELM_180418', 2 # # flag.SO_MV_scalemax =3.000 # flag.SO_MV_scalemin = -2.000 # flag.stg_reporttag ='HS_bee_PELM_180424b' # gr_HS_bee_PELM_180424b # #gr_takefromlist, 'HS_bee_PELM_180424b', 2 # # flag.SO_MV_scalemax =3.000 # flag.SO_MV_scalemin = -2.000 # flag.stg_reporttag ='HS_bee_OXON_PELM_180420' # gr_HS_bee_OXON_PELM_180420 # #gr_takefromlist, 'HS_bee_OXON_PELM_180420', 2 # # flag.SO_MV_scalemax =3.000 # flag.SO_MV_scalemin = -2.000 # flag.stg_reporttag ='HS_bee_OXON_PELM_180427' # gr_HS_bee_OXON_PELM_180427 # #gr_takefromlist, 'HS_bee_OXON_PELM_180427', 2 # # flag.SO_MV_scalemax =3.000 # flag.SO_MV_scalemin = -2.000 # flag.stg_reporttag ='HS_bee_OXON_PELM_180503' # gr_HS_bee_OXON_PELM_180503 # #gr_takefromlist, 'HS_bee_OXON_PELM_180503', 2 # # flag.SO_MV_scalemax =3.000 # flag.SO_MV_scalemin = -2.000 # flag.stg_reporttag ='HS_bee_OXON_PELM_180507' # gr_HS_bee_OXON_PELM_180507 # #gr_takefromlist, 'HS_bee_OXON_PELM_180507', 2 # # flag.SO_MV_scalemax =3.000 # flag.SO_MV_scalemin = -2.000 # flag.stg_reporttag ='HS_bee_OXON_PELM_180509' # gr_HS_bee_OXON_PELM_180509 # #gr_takefromlist, 'HS_bee_OXON_PELM_180509', 2 # # flag.SO_MV_scalemax =3.000 # flag.SO_MV_scalemin = -2.000 # flag.stg_reporttag ='HS_bee_OXON_PELM_180718' # gr_HS_bee_OXON_PELM_180718 # #gr_takefromlist, 'HS_bee_OXON_PELM_180718', 2 # # flag.SO_MV_scalemax =3.000 # flag.SO_MV_scalemin = -2.000 # flag.stg_reporttag ='HS_bee_OXON_180716' # gr_HS_bee_OXON_180716 # #gr_takefromlist, 'HS_bee_OXON_180716', 2 # # flag.SO_MV_scalemax =3.000 # flag.SO_MV_scalemin = -2.000 # flag.stg_reporttag ='HS_bee_OXON_180727' # gr_HS_bee_OXON_180727 #gr_takefromlist, 'HS_bee_OXON_180727', 2 return p1, flag # end of Apis2018_summer, i.e. list of all animals def gr_HS_bee_PELM_180406a(flag): #single animal selection of order how measurements are evaluated flag.RM_newcolumn = 1 ### IDL commant is this # subloop, '14'; 12_AIR ### converts into Python like this (p1,flag) = View_gr_reports.gr_takefromlist(flag.STG_ReportTag, 21, flag, selectformat ='subloop') flag.RM_newcolumn = 0 (p1,flag) = View_gr_reports.gr_takefromlist(flag.STG_ReportTag, 10, flag, selectformat ='subloop') # 01_LINT-4 (p1,flag) = View_gr_reports.gr_takefromlist(flag.STG_ReportTag, 11, flag, selectformat ='subloop') # 02_LINT-3 (p1,flag) = View_gr_reports.gr_takefromlist(flag.STG_ReportTag, 23, flag, selectformat ='subloop') # 14_LINT-4 (p1,flag) = View_gr_reports.gr_takefromlist(flag.STG_ReportTag, 9, flag, selectformat ='subloop') # 00_MOL (p1,flag) = View_gr_reports.gr_takefromlist(flag.STG_ReportTag, 22, flag, selectformat ='subloop') # 13_MOL (p1,flag) = View_gr_reports.gr_takefromlist(flag.STG_ReportTag, 6, flag, selectformat ='subloop') # 15_NONL-3 flag.RM_newcolumn = 1 (p1,flag) = View_gr_reports.gr_takefromlist(flag.STG_ReportTag, 12, flag, selectformat ='subloop') # 03_OXON-10 flag.RM_newcolumn = 0 (p1,flag) = View_gr_reports.gr_takefromlist(flag.STG_ReportTag, 13, flag, selectformat ='subloop') # 04_OXON-9 (p1,flag) = View_gr_reports.gr_takefromlist(flag.STG_ReportTag, 14, flag, selectformat ='subloop') # 05_OXON-8 (p1,flag) = View_gr_reports.gr_takefromlist(flag.STG_ReportTag, 15, flag, selectformat ='subloop') #'; 06_OXON-7 (p1,flag) = View_gr_reports.gr_takefromlist(flag.STG_ReportTag, 16, flag, selectformat ='subloop') #'; 07_OXON-6 (p1,flag) = View_gr_reports.gr_takefromlist(flag.STG_ReportTag, 17, flag, selectformat ='subloop') #'; 08_OXON-5 (p1,flag) = View_gr_reports.gr_takefromlist(flag.STG_ReportTag, 18, flag, selectformat ='subloop') #'; 09_OXON-4 (p1,flag) = View_gr_reports.gr_takefromlist(flag.STG_ReportTag, 19, flag, selectformat ='subloop') #'; 10_OXON-3 (p1,flag) = View_gr_reports.gr_takefromlist(flag.STG_ReportTag, 20, flag, selectformat ='subloop') # 11_OXON-2 return p1, flag ######################################################### ########## Main starts here ######################################################### # define flags #IDL.flags.IDL_default_flags sets the general rules #Set_my_flags modifies these #on my windows system #STG_MotherOfAllFolders = 'C:\\Users\\Giovanni Galizia\\Documents\\Code\\ShareWinXP\\WindowsExchange\\IDL_Data\\spont_activity' #if empty, working directory is used #if platform == 'darwin': # STG_MotherOfAllFolders = '/Users/galizia/Documents/Code/ShareWinXP/WindowsExchange/IDL_Data/spont_activity' # Hannah data on my mac STG_MotherOfAllFolders = '/Users/galizia/Documents/KN_Group/19_Hannah_Burger/Apis2018/Hanna_OXON-PELM_summer2018' flag = Set_my_flags(IDL_flags.IDL_default_flags(STG_MotherOfAllFolders)) #flag.STG_OdorReportPath = os.path.join(STG_MotherOfAllFolders + 'IDL_output\\movies\\' # call program that opens .lst file and performs analysis # the command in spont_activity_master.pro was "subloop, '24' #(p1,flag) = View_gr_reports.gr_takefromlist('030725bR', 3, flag) ####make sure all settings/flags are set, then call this animal (p1,flag) = Apis2018_summer(flag)