# List of inputs and outputs from @animal_warper

AFNI package                          : linux_rocky_8
AFNI version number                   : AFNI_24.2.01
@animal_warper ver                    : 3.62
List of main outputs (this file)      : animal_outs.txt
List of intermediate files            : intermediate/guide_to_ints.txt

Input dset (orig)                     : NMTv1.3.nii.gz
Base dset (templ)                     : yerkes19_abox.nii.gz
Base space                            : YERKES19
Atlas dsets                           : 
Input dset center_out                 : native
Alignment type                        : all (= nonlinear)

Matrix, full aff xform (for AP)       : NMTv1.3_composite_linear_to_template.1D
Matrix, full aff xform, inv           : NMTv1.3_composite_linear_to_template_inv.1D
NL warp, aff2base (for AP)            : NMTv1.3_shft_WARP.nii.gz
NL warp, base2aff                     : NMTv1.3_shft_WARPINV.nii.gz

Input in templ                        : NMTv1.3_warp2std.nii.gz
Input in templ, no skull              : NMTv1.3_warp2std_ns.nii.gz
Input in templ, no skull, unifized    : NMTv1.3_warp2std_nsu.nii.gz
Mask of input                         : NMTv1.3_mask.nii.gz
Input (orig), no skull                : NMTv1.3_ns.nii.gz
Input (orig), no skull, unifized      : NMTv1.3_nsu.nii.gz

Templ surf in orig                    : surfaces/Yerkes19_in_NMTv1.3.gii

QC directory of images                : QC/
Info on atl/seg followers             : QC/report_*.1D
Scripts to view surfaces              : surfaces/do*.tcsh

Command : @animal_warper -ok_to_exist -base yerkes19_abox.nii.gz -base_abbrev Yerkes19 -input NMT_1.3_SS.nii.gz -input_abbrev NMTv1.3 -outdir aw_NMTv1.3_to_Yerkes19 -supersize -cost nmi