#!/bin/tcsh
# make short versions of all the float templates
set dsetlist = ( inia19 macMNI_rescale yerkes19 )
foreach dset ( $dsetlist )
   3dcalc -a ${dset}.nii.gz -datum short -nscale -expr a -prefix ${dset}_short.nii.gz
end

# Yerkes has negative values and very large field of view
# extending far beyond brain
3dAutomask -apply_prefix yerkes19_short_am.nii.gz yerkes19_short.nii.gz 

# for non-AFNI generated templates, mark the others as templates with spaces
3drefit -space INIA19 inia19*.nii.gz
3drefit -space YERKES19 yerkes19*.nii.gz
3drefit -space MACMNI macMNI*.nii.gz