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LICENCE

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+Creative Commons Attribution-ShareAlike 4.0 International Public License
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+

README.md

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-# Scalp_EEG_HFO
-
+# Dataset of pre- and postsurgical EEG recorded from epilepsy patients and HFO markings
+
+## Summary
+We present an electrophysiological dataset recorded from twenty-two subjects during resective epilepsy surgery. We used standard electrodes with 10 mm inter-contact spacing (standard ECoG) in 14 surgeries and high-density grid electrodes with 5 mm spacing (hd-ECoG) in 8 surgeries. We recorded ECoG pre- and post-resection. We detected fast ripples (FR) using a previously validated automatic detector and did visual validation. For each recording, we provide the recorded data and FR markings. We also provide the approximate locations of recordings and resected area. The data was used in our publication "High-density ECoG improves the detection of high frequency oscillations that predict seizure outcome" (doi.org/10.1016/j.clinph.2019.07.008).
+
+## Downloading the data
+
+### Using gin
+
+Create an account on gin and download the *gin* client as described [here](https://web.gin.g-node.org/G-Node/Info/wiki/gin-cli). On your computer, log in using
+```bash
+gin login
+```
+
+Clone the repository using:
+```bash
+gin get USZ_NCH/Scalp_EEG_HFO    
+```
+
+Large data files will not be downloaded automatically. To get them, use
+```bash
+gin get-content <filename>
+```
+
+Downloaded large files will be locked (read-only). You must unlock the files using
+```bash
+gin unlock <filename>
+```
+
+To remove the contents of a large file again, use
+```bash
+gin lock <filename>
+gin remove-content <filename>
+```
+
+See [here](https://web.gin.g-node.org/G-Node/Info/wiki/gin-cli+tutorial) for detailed information on how to use *gin*.
+
+
+### Using git annex
+
+Make sure git and git-annex are installed on your computer. Create an account on gin and upload your public SSH key to your gin profile. Then clone the repository using
+```bash
+git clone git@gin.g-node.org:/USZ_NCH/Scalp_EEG_HFO .git
+```
+
+Large data files will not be downloaded automatically. To get them, use
+```bash
+git annex get <filename>
+```
+
+Downloaded large files will be locked (read-only). You must unlock the files using
+```bash
+git annex unlock <filename>
+```
+
+To remove the contents of a large file again, use
+```bash
+git annex --force lock <filename>
+git annex drop <filename>
+```
+
+See the *git annex* documentation for details.
+
+
+### Using the web browser
+
+Download the latest release as a zip file by clicking on *Releases* on the main page at https://gin.g-node.org/USZ_NCH/Scalp_EEG_HFO. This zip file will contain all small (text) files only, while large data files will not be downloaded automatically and an empty placeholder will be put in their place. To get the full content of such a large file , download these files individually as needed from the web interface by clicking on them in the repository browser.
+
+## Updates
+Updated versions of the codes will be provided at:
+https://gin.g-node.org/USZ_NCH/Scalp_EEG_HFO.
+
+## Related Publications
+* Boran Ece, Sarnthein J, Krayenbühl N, Ramantani G, Fedele T. High-frequency oscillations in scalp EEG mirror seizure frequency in pediatric focal epilepsy. Sci Rep.	
+* Boran E, Ramantani G, Krayenbuhl N, Schreiber M, Konig K, Fedele T, Sarnthein J. High-density ECoG improves the detection of high frequency oscillations that predict seizure outcome. Clin Neurophysiol 2019;130(10):1882-8. https://doi.org/10.1016/j.clinph.2019.07.008.
+* Fedele T, Burnos S, Boran E, Krayenbuhl N, Hilfiker P, Grunwald T, Sarnthein J. Resection of high frequency oscillations predicts seizure outcome in the individual patient. Sci Rep 2017;7(1):13836. https://doi.org/10.1038/s41598-017-13064-1.
+* Fedele T, Ramantani G, Burnos S, Hilfiker P, Curio G, Grunwald T, Krayenbühl N, Sarnthein J. Prediction of seizure outcome improved by fast ripples detected in low-noise intraoperative corticogram. Clin Neurophysiol 2017;128(7):1220-6. https://doi.org/10.1016/j.clinph.2017.03.038.
+* Fedele T, van 't Klooster M, Burnos S, Zweiphenning W, van Klink N, Leijten F, Zijlmans M, Sarnthein J. Automatic detection of high frequency oscillations during epilepsy surgery predicts seizure outcome. Clin Neurophysiol 2016;127(9):3066-74. https://doi.org/10.1016/j.clinph.2016.06.009.
+
+	
+## Licensing
+<a rel="license" href="https://creativecommons.org/licenses/by-sa/4.0/"><img alt="Creative Commons License" style="border-width:0" src="https://i.creativecommons.org/l/by-sa/4.0/88x31.png" /></a><br />This work is licensed under a <a rel="license" href="http://creativecommons.org/licenses/by-sa/4.0/">Creative Commons Attribution-ShareAlike 4.0 International License</a>.
+
+See `LICENSE.txt` for the full license.
+

datacite.yml

@@ -0,0 +1,102 @@
+# Required fields
+# The main researchers involved working on the resource,
+# or the authors of the publication in priority order.
+# May be a corporate/institutional or personal name.
+# Include digital identifier (e.g., ORCID) if possible
+authors:
+  -
+    firstname: "Ece"
+    lastname: "Boran"
+    affiliation: "Klinik für Neurochirurgie, UniversitätsSpital und Universität Zürich, 8091 Zürich, Switzerland"
+    id: "orcid.org/0000-0002-0395-7575"
+  -
+    firstname: "Johannes"
+    lastname: "Sarnthein"
+    affiliation: "Klinik für Neurochirurgie, UniversitätsSpital und Universität Zürich, 8091 Zürich, Switzerland"
+    id: "orcid.org/0000-0001-9141-381X"
+  -
+    firstname: "Niklaus"
+    lastname: "Krayenbühl"
+    affiliation: "Klinik für Neurochirurgie, UniversitätsSpital und Universität Zürich, 8091 Zürich, Switzerland"
+  -
+    firstname: "Georgia"
+    lastname: "Ramantani"
+    affiliation: "Neuropädiatrie, Universitäts-Kinderspital Zürich, 8032 Zürich, Switzerland"
+    id: "orcid.org/0000-0002-7931-2327"
+  -
+    firstname: "Tommaso"
+    lastname: "Fedele"
+    affiliation: "Institute for Cognitive Neuroscience, National Research University Higher School of Economics, 101000 Moscow, Russian Federation"
+    id: "orcid.org/0000-0001-7574-8062"
+
+# A name or title to describe the published resource.
+title: "High-frequency oscillations in scalp EEG mirror seizure frequency in pediatric focal epilepsy"
+
+# Any additional information. It is best practice to supply a description for the resource.
+description: |
+    We present an electrophysiological dataset recorded from eleven subjects. EEG recordings are done before and after epilepsy surgery. For ECoG recordings, we used standard electrodes with 10 mm inter-contact spacing (standard ECoG) in 14 surgeries and high-density grid electrodes with 5 mm spacing (hd-ECoG) in 8 surgeries. We recorded ECoG pre- and post-resection. We detected fast ripples (FR) using a previously validated automatic detector and did visual validation. For each recording, we provided the recorded data and FR markings. We also provide the approximate locations of recordings and resected area.
+
+# List of keywords the resource should be associated with.
+keywords:
+  - Epilepsy
+  - Electroencephalography (EEG)
+  - High frequency oscillations (HFO)
+  - Epilepsy surgery
+  - Therapy monitoring
+  - Antiepileptic drugs (AED)
+  - Intraoperative recording
+  - Electrocorticography (ECoG)
+  - Ripple
+  - Fast ripple (FR)
+  - Resection area
+  - Seizure outcome
+  - Automatic HFO detection
+  - Electrophysiology
+  - High-density ECoG
+  - Standard ECoG
+  - Spatial sampling
+  - Grid
+  - Strip
+  - Subdural
+  - Human
+  - Neuroscience
+
+# Any rights information for this resource. Please provide both a license name and a link to the license.
+# Please add also a LICENSE file to the repository
+license:
+  name: "Creative Commons Attribution-ShareAlike 4.0 International Public License"
+  url: "https://creativecommons.org/licenses/by-sa/4.0/"
+
+## Optional Fields
+
+# Any funding reference for this resource. Separate funder name and grant number by comma
+funding:
+  - "Swiss National Science Foundation, SNSF 320030_176222"
+  - "Mach-Gaensslen Stiftung"
+  - "Stiftung für wissenschaftliche Forschung an der Universität Zürich"
+  - "Forschungskredit der Universität Zürich"
+
+# Related publications. reftype might be: IsCitedBy, IsSupplementTo, IsReferencedBy, IsPartOf
+# for further valid types see https://schema.datacite.org/meta/kernel-4
+# Please provide digital identifier (e.g., DOI) if possible.
+references:
+  -
+    doi: "10.1016/j.clinph.2019.07.008"    
+    reftype: "IsSupplementTo"
+    name: "High-frequency oscillations in scalp EEG mirror seizure frequency in pediatric focal epilepsy."
+  -
+    doi: "10.1016/j.clinph.2019.07.008"     
+    reftype: "IsSupplementTo"
+    name: "High-density ECoG improves the detection of high frequency oscillations that predict seizure outcome."
+  -
+    doi: "10.1038/s41598-017-13064-1"     
+    reftype: "Cites"
+    name: "Resection of high frequency oscillations predicts seizure outcome in the individual patient."
+  -
+    doi: "10.1016/j.clinph.2017.03.038"     
+    reftype: "Cites"
+    name: "Prediction of seizure outcome improved by fast ripples detected in low-noise intraoperative corticogram."
+  -
+    doi: "10.1016/j.clinph.2016.06.009"     
+    reftype: "Cites"
+    name: "Automatic detection of high frequency oscillations during epilepsy surgery predicts seizure outcome."