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@@ -1,12 +1,21 @@
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-# DL-Int-1_ageBasedChanges_data
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+# Adaptations of honeybee auditory interneurons during maturation
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-This repository contains processed electrophysiology and morphology data used for investigating age-related changes in the honeybee auditory interneuron DL-Int-1
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+This repository contains processed electrophysiology and morphology data used for investigating adaptations in the honeybee auditory interneuron DL-Int-1 during maturation.
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+
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+Reference: Kumaraswamy A., Kai K., Ikeno H., Ai H., Wachtler T. (2018) "Adaptations of honeybee auditory interneurons during maturation". In: bioRxiv.
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## General Notes
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1. A list of neuron IDs as well as their associated age classification is provided in the file "Metadata_age.xlsx"
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2. Neuron morphology data is stored in [SWC format](http://research.mssm.edu/cnic/swc.html).
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-3. Electrophyiology data is stored in [NIX HDF5 format](https://github.com/G-Node/nix/wiki)
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+3. Electrophyiology data is stored in [NIX HDF5 format](https://github.com/G-Node/nix/wiki).
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+4. The morphology of each DL-Int-1 are represented by multiple SWC files. Each file contains a subregion of DL-Int-1 (see the reference above for description):
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+
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+ - WN: Whole Arborization
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+ - MB: Main Branch
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+ - DB: Dorsal Branch
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+ - VB: Ventral Branch
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+
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### Folder Specific Notes
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@@ -14,7 +23,7 @@ This repository contains processed electrophysiology and morphology data used fo
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Contains membrane potential and vibration stimulus traces in [NIX HDF5 format](https://github.com/G-Node/nix/wiki). They data in them can be accessed using the library [GJEphys](https://github.com/wachtlerlab/GJEphys) (see [Usage Guidelines](https://github.com/wachtlerlabGJEphys/doc/Description_Usage.docx )).
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#### MorphologyData/MorphologiesBeforeRegistration
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-Contains DL-Int-1 morphologies reconstructed from LSM images of single dye filled neurons using [Ikeno et al 2018](https://doi.org/10.1101/323758).
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+Contains DL-Int-1 morphologies reconstructed from LSM images of single dye filled neurons using [Ikeno et al 2018](https://doi.org/10.3389/fninf.2018.00061).
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#### MorphologyData/MorphologiesAfterRegistration
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Contains DL-Int-1 morphologies after spatial registration using [Reg-MaxS-N](https://doi.org/10.1186/s12859-018-2136-z). Each subfolder contains morphologies using a specific pair of DL-Int-1 morphologies as templates, which is encoded in the name of the folder. A suffix "_xpcScaled" indicates that newly emerged adult morphologies were scaled up by x% before registering them with forager morphologies.
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Ajayrama Kumaraswamy