Summary

Shell-wise joint distribution of SNR vs. FA in every voxel

This visualization divides the data by shells, and shows the joint distribution of SNR vs. FA. At the bottom, the distributions are marginalized for SNR. Please note that the figures of SNR provided are calculated with a coarse estimation of the signal variability, and therefore should be interpreted with care.

Get figure file: sub-001/figures/sub-001_ses-pilot005_acq-lowres_dir-unknown_desc-heatmap_dwi.svg

Fractional anisotropy (FA) map

Reconstructed FA map.

Get figure file: sub-001/figures/sub-001_ses-pilot005_acq-lowres_dir-unknown_desc-fa_dwi.svg

Mean diffusivity (MD) map

Reconstructed MD map.

Get figure file: sub-001/figures/sub-001_ses-pilot005_acq-lowres_dir-unknown_desc-md_dwi.svg

DWI shells

Reports for: bval 0.

Voxel-wise average and standard deviation across volumes in this DWI shell.

This panel shows mosaics flickering between the voxel-wise average and standard deviation for each shell.

Problem loading figure sub-001/figures/sub-001_ses-pilot005_acq-lowres_dir-unknown_desc-avgstd_bval-00000_dwi.svg. If the link below works, please try reloading the report in your browser.
Get figure file: sub-001/figures/sub-001_ses-pilot005_acq-lowres_dir-unknown_desc-avgstd_bval-00000_dwi.svg

View of the background of the voxel-wise average of this DWI shell

This panel shows a mosaic enhancing the background around the head. Artifacts usually unveil themselves in the air surrounding the head, where no signal sources are present.

Get figure file: sub-001/figures/sub-001_ses-pilot005_acq-lowres_dir-unknown_desc-background_bval-00000_dwi.svg

Reports for: bval 1000.

Voxel-wise average and standard deviation across volumes in this DWI shell.

This panel shows mosaics flickering between the voxel-wise average and standard deviation for each shell.

Problem loading figure sub-001/figures/sub-001_ses-pilot005_acq-lowres_dir-unknown_desc-avgstd_bval-01000_dwi.svg. If the link below works, please try reloading the report in your browser.
Get figure file: sub-001/figures/sub-001_ses-pilot005_acq-lowres_dir-unknown_desc-avgstd_bval-01000_dwi.svg

View of the background of the voxel-wise average of this DWI shell

This panel shows a mosaic enhancing the background around the head. Artifacts usually unveil themselves in the air surrounding the head, where no signal sources are present.

Get figure file: sub-001/figures/sub-001_ses-pilot005_acq-lowres_dir-unknown_desc-background_bval-01000_dwi.svg

Reports for: bval 2000.

Voxel-wise average and standard deviation across volumes in this DWI shell.

This panel shows mosaics flickering between the voxel-wise average and standard deviation for each shell.

Problem loading figure sub-001/figures/sub-001_ses-pilot005_acq-lowres_dir-unknown_desc-avgstd_bval-02000_dwi.svg. If the link below works, please try reloading the report in your browser.
Get figure file: sub-001/figures/sub-001_ses-pilot005_acq-lowres_dir-unknown_desc-avgstd_bval-02000_dwi.svg

View of the background of the voxel-wise average of this DWI shell

This panel shows a mosaic enhancing the background around the head. Artifacts usually unveil themselves in the air surrounding the head, where no signal sources are present.

Get figure file: sub-001/figures/sub-001_ses-pilot005_acq-lowres_dir-unknown_desc-background_bval-02000_dwi.svg

Reports for: bval 3000.

Voxel-wise average and standard deviation across volumes in this DWI shell.

This panel shows mosaics flickering between the voxel-wise average and standard deviation for each shell.

Problem loading figure sub-001/figures/sub-001_ses-pilot005_acq-lowres_dir-unknown_desc-avgstd_bval-03000_dwi.svg. If the link below works, please try reloading the report in your browser.
Get figure file: sub-001/figures/sub-001_ses-pilot005_acq-lowres_dir-unknown_desc-avgstd_bval-03000_dwi.svg

View of the background of the voxel-wise average of this DWI shell

This panel shows a mosaic enhancing the background around the head. Artifacts usually unveil themselves in the air surrounding the head, where no signal sources are present.

Get figure file: sub-001/figures/sub-001_ses-pilot005_acq-lowres_dir-unknown_desc-background_bval-03000_dwi.svg

Reports for: bval 700.

Voxel-wise average and standard deviation across volumes in this DWI shell.

This panel shows mosaics flickering between the voxel-wise average and standard deviation for each shell.

Problem loading figure sub-001/figures/sub-001_ses-pilot005_acq-lowres_dir-unknown_desc-avgstd_bval-00700_dwi.svg. If the link below works, please try reloading the report in your browser.
Get figure file: sub-001/figures/sub-001_ses-pilot005_acq-lowres_dir-unknown_desc-avgstd_bval-00700_dwi.svg

View of the background of the voxel-wise average of this DWI shell

This panel shows a mosaic enhancing the background around the head. Artifacts usually unveil themselves in the air surrounding the head, where no signal sources are present.

Get figure file: sub-001/figures/sub-001_ses-pilot005_acq-lowres_dir-unknown_desc-background_bval-00700_dwi.svg

About

Errors

Reproducibility and provenance information

Thanks for using MRIQC. The following information may assist in reconstructing the provenance of the corresponding derivatives.

Execution environmentposix
Input filename/sub-001/ses-pilot005/dwi/sub-001_ses-pilot005_acq-lowres_dir-unknown_dwi.nii.gz
VersionsMRIQC24.0.0
VersionsNiPype1.8.7.dev0
VersionsTemplateFlow24.2.0.dev49+gb1f2eb2a.d20240413
md5sumc086232e8ddb71bf4efbd32ab195fae4

AcquisitionMatrixPE120
AcquisitionNumber1
AcquisitionTime17:32:22.687500
B0FieldSource['pilot005pepolarb0', 'pilot005phasediff']
BandwidthPerPixelPhaseEncode23.81
BaseResolution120
BodyPartExaminedBRAIN
CoilCombinationMethodAdaptive Combine
CoilStringHeadNeck_64
ConversionSoftwaredcm2niix
ConversionSoftwareVersionv1.0.20220720
DerivedVendorReportedEchoSpacing0.000699986
DeviceSerialNumber67014
DiffusionSchemeBipolar
DwellTime2.4e-06
EchoTime0.092
EchoTrainLength51
EffectiveEchoSpacing0.000349993
FlipAngle90
HeudiconvVersion1.0.0
ImageOrientationPatientDICOM[0.998587, -0.0141405, 0.0512236, 0.0135951, 0.999847, 0.0109789]
ImageType['ORIGINAL', 'PRIMARY', 'DIFFUSION', 'NONE', 'ND', 'MFSPLIT']
ImageTypeText['ORIGINAL', 'PRIMARY', 'DIFFUSION', 'NONE']
ImagingFrequency123.248
InPlanePhaseEncodingDirectionDICOMCOL
InstitutionAddressRue du Bugnon 21,Lausanne,District,CH,1011
InstitutionNameCHUV
MRAcquisitionType2D
MagneticFieldStrength3
ManufacturerSiemens
ManufacturersModelNameMAGNETOM Prisma Fit
ModalityMR
MultibandAccelerationFactor3
NonlinearGradientCorrectionFalse
ParallelReductionFactorInPlane2
PartialFourier0.875
PatientPositionHFS
PercentPhaseFOV100
PercentSampling100
PhaseEncodingDirectionj
PhaseEncodingSteps120
PhaseResolution1
PixelBandwidth1736
ProcedureStepDescriptionRESEARCH Oscar
ProtocolNamemicro_struct_137dir_BIPOLAR_b3000_2mm-iso_PA
PulseSequenceDetails%SiemensSeq%\ep2d_diff
ReceiveCoilActiveElementsHC1-6
ReceiveCoilNameHeadNeck_64
ReconMatrixPE120
RefLinesPE42
RepetitionTime7.8
SAR0.197092
ScanOptionsPFP\FS\PER
ScanningSequenceGR\EP
SequenceName*ep_b0
SequenceVariantSK
SeriesDescriptionmicro_struct_137dir_BIPOLAR_b3000_2mm-iso_PA
SeriesNumber24
ShimSetting[8235, -5641, -6050, 573, -94, -388, 30, 1]
SliceThickness2
SliceTiming[6.4, 0, 6.58, 0.1775, 6.7575, 0.3575, 6.935, 0.535, 7.1125, 0.7125, 7.29, 0.89, 7.4675, 1.0675, 7.645, 1.245, 7.8225, 1.4225, 8, 1.6, 8.18, 1.78, 8.3575, 1.9575, 8.535, 2.135, 8.7125, 2.3125, 8.89, 2.49, 9.0675, 2.6675, 9.245, 2.845, 9.4225, 3.0225, 9.6, 3.2, 9.78, 3.38, 9.9575, 3.5575, 10.135, 3.735, 10.3125, 3.9125, 10.49, 4.09, 10.6675, 4.2675, 10.845, 4.445, 11.0225, 4.6225, 11.2, 4.8, 11.38, 4.98, 11.5575, 5.1575, 11.735, 5.335, 11.9125, 5.5125, 12.09, 5.69, 12.2675, 5.8675, 12.445, 6.045, 12.6225, 6.2225]
SoftwareVersionssyngo MR XA30
SpacingBetweenSlices2
StationNameLRG10884
TotalReadoutTime0.0416492
TxRefAmp246.554
VendorReportedEchoSpacing0.0007
dcmmetaaffine[[-1.9971740245819092, 0.027190199121832848, 0.10300000011920929, 114.15436553955078], [0.02828099951148033, 1.9996939897537231, 0.020999999716877937, -94.21658325195312], [0.10244719684123993, -0.021957799792289734, 1.9972000122070312, -64.79572296142578], [0.0, 0.0, 0.0, 1.0]]
dcmmetareorient_transform[[0.0, -1.0, 0.0, 119.0], [1.0, 0.0, 0.0, 0.0], [0.0, 0.0, -1.0, 71.0], [0.0, 0.0, 0.0, 1.0]]
dcmmetashape[120, 120, 72, 147]
dcmmetaslice_dim2
dcmmetaversion0.6
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NumberOfShells4
bValues[0.0, 700.0, 1000.0, 1950.0, 2000.0, 2950.0, 3000.0]
bValuesEstimation[700.0, 1000.0, 2000.0, 3000.0]
bdiffsmax0.3137
bdiffsmean0.2066
bdiffsmedian0.2327
bdiffsmin0.0073
efcshell012.0717
efcshell020.9838
efcshell030.7121
efcshell040.5006
efcshell050.5244
fadegenerate0.0
fanans0.0
fbershell0153.48
fbershell02400.0
fbershell03473.0625
fbershell04455.1111
fbershell05186.7778
fdmean1.668
fdnum140
fdperc95.23809523809524
ndc0.8074
sigmacc26.6868
sigmapca9.8757
sigmapiesno0.8254
snrccshell06.32
snrccshell1best6.19
snrccshell1worst6.19
snrccshell2best4.12
snrccshell2worst2.25
snrccshell3best2.87
snrccshell3worst1.72
snrccshell4best2.09
snrccshell4worst1.08
spikesglobal58.01
spikesslicei275.57
spikesslicej251.17
spikesslicek368.95
summarybgk629.3804
summarybgmad5.9304
summarybgmean28.6032
summarybgmedian5.0
summarybgn853236.0
summarybgp050.0
summarybgp95135.0
summarybgstdv96.7399
summaryfgk6.0338
summaryfgmad164.5688
summaryfgmean392.1723
summaryfgmedian317.0
summaryfgn183564.0
summaryfgp05117.0
summaryfgp95945.0
summaryfgstdv270.307
summarywmk15.7458
summarywmmad77.0953
summarywmmean236.6147
summarywmmedian233.0
summarywmn52819.0
summarywmp05108.0
summarywmp95381.0
summarywmstdv95.9518
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