Summary

Shell-wise joint distribution of SNR vs. FA in every voxel

This visualization divides the data by shells, and shows the joint distribution of SNR vs. FA. At the bottom, the distributions are marginalized for SNR. Please note that the figures of SNR provided are calculated with a coarse estimation of the signal variability, and therefore should be interpreted with care.

Get figure file: sub-001/figures/sub-001_ses-006_acq-highres_dir-PA_desc-heatmap_dwi.svg

Fractional anisotropy (FA) map

Reconstructed FA map.

Get figure file: sub-001/figures/sub-001_ses-006_acq-highres_dir-PA_desc-fa_dwi.svg

Mean diffusivity (MD) map

Reconstructed MD map.

Get figure file: sub-001/figures/sub-001_ses-006_acq-highres_dir-PA_desc-md_dwi.svg

DWI shells

Reports for: bval 0.

Voxel-wise average and standard deviation across volumes in this DWI shell.

This panel shows mosaics flickering between the voxel-wise average and standard deviation for each shell.

Problem loading figure sub-001/figures/sub-001_ses-006_acq-highres_dir-PA_desc-avgstd_bval-00000_dwi.svg. If the link below works, please try reloading the report in your browser.
Get figure file: sub-001/figures/sub-001_ses-006_acq-highres_dir-PA_desc-avgstd_bval-00000_dwi.svg

View of the background of the voxel-wise average of this DWI shell

This panel shows a mosaic enhancing the background around the head. Artifacts usually unveil themselves in the air surrounding the head, where no signal sources are present.

Get figure file: sub-001/figures/sub-001_ses-006_acq-highres_dir-PA_desc-background_bval-00000_dwi.svg

Reports for: bval 1000.

Voxel-wise average and standard deviation across volumes in this DWI shell.

This panel shows mosaics flickering between the voxel-wise average and standard deviation for each shell.

Problem loading figure sub-001/figures/sub-001_ses-006_acq-highres_dir-PA_desc-avgstd_bval-01000_dwi.svg. If the link below works, please try reloading the report in your browser.
Get figure file: sub-001/figures/sub-001_ses-006_acq-highres_dir-PA_desc-avgstd_bval-01000_dwi.svg

View of the background of the voxel-wise average of this DWI shell

This panel shows a mosaic enhancing the background around the head. Artifacts usually unveil themselves in the air surrounding the head, where no signal sources are present.

Get figure file: sub-001/figures/sub-001_ses-006_acq-highres_dir-PA_desc-background_bval-01000_dwi.svg

Reports for: bval 2000.

Voxel-wise average and standard deviation across volumes in this DWI shell.

This panel shows mosaics flickering between the voxel-wise average and standard deviation for each shell.

Problem loading figure sub-001/figures/sub-001_ses-006_acq-highres_dir-PA_desc-avgstd_bval-02000_dwi.svg. If the link below works, please try reloading the report in your browser.
Get figure file: sub-001/figures/sub-001_ses-006_acq-highres_dir-PA_desc-avgstd_bval-02000_dwi.svg

View of the background of the voxel-wise average of this DWI shell

This panel shows a mosaic enhancing the background around the head. Artifacts usually unveil themselves in the air surrounding the head, where no signal sources are present.

Get figure file: sub-001/figures/sub-001_ses-006_acq-highres_dir-PA_desc-background_bval-02000_dwi.svg

Reports for: bval 3000.

Voxel-wise average and standard deviation across volumes in this DWI shell.

This panel shows mosaics flickering between the voxel-wise average and standard deviation for each shell.

Problem loading figure sub-001/figures/sub-001_ses-006_acq-highres_dir-PA_desc-avgstd_bval-03000_dwi.svg. If the link below works, please try reloading the report in your browser.
Get figure file: sub-001/figures/sub-001_ses-006_acq-highres_dir-PA_desc-avgstd_bval-03000_dwi.svg

View of the background of the voxel-wise average of this DWI shell

This panel shows a mosaic enhancing the background around the head. Artifacts usually unveil themselves in the air surrounding the head, where no signal sources are present.

Get figure file: sub-001/figures/sub-001_ses-006_acq-highres_dir-PA_desc-background_bval-03000_dwi.svg

Reports for: bval 700.

Voxel-wise average and standard deviation across volumes in this DWI shell.

This panel shows mosaics flickering between the voxel-wise average and standard deviation for each shell.

Problem loading figure sub-001/figures/sub-001_ses-006_acq-highres_dir-PA_desc-avgstd_bval-00700_dwi.svg. If the link below works, please try reloading the report in your browser.
Get figure file: sub-001/figures/sub-001_ses-006_acq-highres_dir-PA_desc-avgstd_bval-00700_dwi.svg

View of the background of the voxel-wise average of this DWI shell

This panel shows a mosaic enhancing the background around the head. Artifacts usually unveil themselves in the air surrounding the head, where no signal sources are present.

Get figure file: sub-001/figures/sub-001_ses-006_acq-highres_dir-PA_desc-background_bval-00700_dwi.svg

About

Errors

Reproducibility and provenance information

Thanks for using MRIQC. The following information may assist in reconstructing the provenance of the corresponding derivatives.

Execution environmentposix
Input filename/sub-001/ses-006/dwi/sub-001_ses-006_acq-highres_dir-PA_dwi.nii.gz
VersionsMRIQC24.0.0
VersionsNiPype1.8.7.dev0
VersionsTemplateFlow24.2.0.dev49+gb1f2eb2a.d20240413
md5sum3226d0049c5849c381fcd5d6bb5a5b03

AcquisitionMatrixPE146
AcquisitionNumber1
AcquisitionTime11:34:20.785000
B0FieldSource['006pepolarb0', '006phasediff']
BandwidthPerPixelPhaseEncode19.569
BaseResolution146
BodyPartExaminedBRAIN
CoilCombinationMethodAdaptive Combine
CoilStringHeadNeck_64
ConversionSoftwaredcm2niix
ConversionSoftwareVersionv1.0.20220720
Deltas[0.0233, 0.0475]
DerivedVendorReportedEchoSpacing0.000700017
DeviceSerialNumber67014
DiffusionSchemeMonopolar
DwellTime2.1e-06
EchoTime0.098
EchoTrainLength64
EffectiveEchoSpacing0.000350008
FlipAngle90
HeudiconvVersion1.0.0
ImageOrientationPatientDICOM[0.999222, -0.0261329, 0.0295338, 0.0275617, 0.998416, -0.0490552]
ImageType['ORIGINAL', 'PRIMARY', 'DIFFUSION', 'NONE', 'ND', 'MFSPLIT']
ImageTypeText['ORIGINAL', 'PRIMARY', 'DIFFUSION', 'NONE']
ImagingFrequency123.248
InPlanePhaseEncodingDirectionDICOMCOL
InstitutionAddressRue du Bugnon 21,Lausanne,District,CH,1011
InstitutionNameCHUV
MRAcquisitionType2D
MagneticFieldStrength3
ManufacturerSiemens
ManufacturersModelNameMAGNETOM Prisma Fit
ModalityMR
MultibandAccelerationFactor3
NonlinearGradientCorrectionFalse
ParallelReductionFactorInPlane2
PartialFourier0.875
PatientPositionHFS
PercentPhaseFOV100
PercentSampling100
PhaseEncodingDirectionj
PhaseEncodingSteps146
PhaseResolution1
PixelBandwidth1631
ProcedureStepDescriptionRESEARCH Oscar
ProtocolNamedwi-dwi_acq-highres_dir-PA__trigger_monopolar
PulseSequenceDetails%CustomerSeq%\ep2d_diff_trigg
ReceiveCoilActiveElementsHC1-6
ReceiveCoilNameHeadNeck_64
ReconMatrixPE146
RefLinesPE54
RepetitionTime7
SAR0.172882
ScanOptionsPFP\FS\PER
ScanningSequenceGR\EP
SequenceNameep_b0
SequenceVariantSK
SeriesDescriptiondwi-dwi_acq-highres_dir-PA__trigger_monopolar
SeriesNumber8
ShimSetting[8248, -5634, -6115, 464, -80, -298, 70, 12]
SliceThickness1.6
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SoftwareVersionssyngo MR XA30
SpacingBetweenSlices1.6
StationNameLRG10884
TotalReadoutTime0.0507512
TxRefAmp250.135
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dcmmetareorient_transform[[0.0, -1.0, 0.0, 145.0], [1.0, 0.0, 0.0, 0.0], [0.0, 0.0, -1.0, 86.0], [0.0, 0.0, 0.0, 1.0]]
dcmmetashape[146, 146, 87, 280]
dcmmetaslice_dim2
dcmmetaversion0.6
time{'samples': {'AcquisitionNumber': [1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51, 52, 53, 54, 55, 56, 57, 58, 59, 60, 61, 62, 63, 64, 65, 66, 67, 68, 69, 70, 71, 72, 73, 74, 75, 76, 77, 78, 79, 80, 81, 82, 83, 84, 85, 86, 87, 88, 89, 90, 91, 92, 93, 94, 95, 96, 97, 98, 99, 100, 101, 102, 103, 104, 105, 106, 107, 108, 109, 110, 111, 112, 113, 114, 115, 116, 117, 118, 119, 120, 121, 122, 123, 124, 125, 126, 127, 128, 129, 130, 131, 132, 133, 134, 135, 136, 137, 138, 139, 140, 141, 142, 143, 144, 145, 146, 147, 148, 149, 150, 151, 152, 153, 154, 155, 156, 157, 158, 159, 160, 161, 162, 163, 164, 165, 166, 167, 168, 169, 170, 171, 172, 173, 174, 175, 176, 177, 178, 179, 180, 181, 182, 183, 184, 185, 186, 187, 188, 189, 190, 191, 192, 193, 194, 195, 196, 197, 198, 199, 200, 201, 202, 203, 204, 205, 206, 207, 208, 209, 210, 211, 212, 213, 214, 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NumberOfShells4
bValues[0.0, 700.0, 1000.0, 2000.0, 3000.0]
bValuesEstimation[700.0, 1000.0, 2000.0, 3000.0]
bdiffsmax0.3303
bdiffsmean0.2491
bdiffsmedian0.2752
bdiffsmin0.0044
efcshell012.1838
efcshell021.0704
efcshell030.8328
efcshell040.5793
efcshell050.6044
fadegenerate0.0
fanans0.0
fbershell0125.7901
fbershell02117.4082
fbershell03164.6944
fbershell04106.7778
fbershell0551.3611
fdmean4.2453
fdnum279
fdperc99.64285714285714
ndc0.6474
sigmacc42.9955
sigmapca15.6885
sigmapiesno1.6508
snrccshell03.97
snrccshell1best3.98
snrccshell1worst3.98
snrccshell2best2.51
snrccshell2worst1.61
snrccshell3best2.23
snrccshell3worst1.43
snrccshell4best1.55
snrccshell4worst0.98
spikesglobal34.39
spikesslicei198.23
spikesslicej199.07
spikesslicek190.0
summarybgk599.8584
summarybgmad8.8956
summarybgmean29.0489
summarybgmedian9.0
summarybgn1498926.0
summarybgp052.0
summarybgp95111.0
summarybgstdv103.2536
summaryfgk9.2486
summaryfgmad176.4297
summaryfgmean403.6646
summaryfgmedian312.0
summaryfgn355566.0
summaryfgp05104.0
summaryfgp951070.0
summaryfgstdv327.7996
summarywmk9.2308
summarywmmad87.4735
summarywmmean222.6692
summarywmmedian219.0
summarywmn104227.0
summarywmp0592.0
summarywmp95369.0
summarywmstdv91.2356
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