Summary

Shell-wise joint distribution of SNR vs. FA in every voxel

This visualization divides the data by shells, and shows the joint distribution of SNR vs. FA. At the bottom, the distributions are marginalized for SNR. Please note that the figures of SNR provided are calculated with a coarse estimation of the signal variability, and therefore should be interpreted with care.

Get figure file: sub-001/figures/sub-001_ses-003_acq-highres_dir-LR_desc-heatmap_dwi.svg

Fractional anisotropy (FA) map

Reconstructed FA map.

Get figure file: sub-001/figures/sub-001_ses-003_acq-highres_dir-LR_desc-fa_dwi.svg

Mean diffusivity (MD) map

Reconstructed MD map.

Get figure file: sub-001/figures/sub-001_ses-003_acq-highres_dir-LR_desc-md_dwi.svg

DWI shells

Reports for: bval 0.

Voxel-wise average and standard deviation across volumes in this DWI shell.

This panel shows mosaics flickering between the voxel-wise average and standard deviation for each shell.

Problem loading figure sub-001/figures/sub-001_ses-003_acq-highres_dir-LR_desc-avgstd_bval-00000_dwi.svg. If the link below works, please try reloading the report in your browser.
Get figure file: sub-001/figures/sub-001_ses-003_acq-highres_dir-LR_desc-avgstd_bval-00000_dwi.svg

View of the background of the voxel-wise average of this DWI shell

This panel shows a mosaic enhancing the background around the head. Artifacts usually unveil themselves in the air surrounding the head, where no signal sources are present.

Get figure file: sub-001/figures/sub-001_ses-003_acq-highres_dir-LR_desc-background_bval-00000_dwi.svg

Reports for: bval 1000.

Voxel-wise average and standard deviation across volumes in this DWI shell.

This panel shows mosaics flickering between the voxel-wise average and standard deviation for each shell.

Problem loading figure sub-001/figures/sub-001_ses-003_acq-highres_dir-LR_desc-avgstd_bval-01000_dwi.svg. If the link below works, please try reloading the report in your browser.
Get figure file: sub-001/figures/sub-001_ses-003_acq-highres_dir-LR_desc-avgstd_bval-01000_dwi.svg

View of the background of the voxel-wise average of this DWI shell

This panel shows a mosaic enhancing the background around the head. Artifacts usually unveil themselves in the air surrounding the head, where no signal sources are present.

Get figure file: sub-001/figures/sub-001_ses-003_acq-highres_dir-LR_desc-background_bval-01000_dwi.svg

Reports for: bval 2000.

Voxel-wise average and standard deviation across volumes in this DWI shell.

This panel shows mosaics flickering between the voxel-wise average and standard deviation for each shell.

Problem loading figure sub-001/figures/sub-001_ses-003_acq-highres_dir-LR_desc-avgstd_bval-02000_dwi.svg. If the link below works, please try reloading the report in your browser.
Get figure file: sub-001/figures/sub-001_ses-003_acq-highres_dir-LR_desc-avgstd_bval-02000_dwi.svg

View of the background of the voxel-wise average of this DWI shell

This panel shows a mosaic enhancing the background around the head. Artifacts usually unveil themselves in the air surrounding the head, where no signal sources are present.

Get figure file: sub-001/figures/sub-001_ses-003_acq-highres_dir-LR_desc-background_bval-02000_dwi.svg

Reports for: bval 3000.

Voxel-wise average and standard deviation across volumes in this DWI shell.

This panel shows mosaics flickering between the voxel-wise average and standard deviation for each shell.

Problem loading figure sub-001/figures/sub-001_ses-003_acq-highres_dir-LR_desc-avgstd_bval-03000_dwi.svg. If the link below works, please try reloading the report in your browser.
Get figure file: sub-001/figures/sub-001_ses-003_acq-highres_dir-LR_desc-avgstd_bval-03000_dwi.svg

View of the background of the voxel-wise average of this DWI shell

This panel shows a mosaic enhancing the background around the head. Artifacts usually unveil themselves in the air surrounding the head, where no signal sources are present.

Get figure file: sub-001/figures/sub-001_ses-003_acq-highres_dir-LR_desc-background_bval-03000_dwi.svg

Reports for: bval 700.

Voxel-wise average and standard deviation across volumes in this DWI shell.

This panel shows mosaics flickering between the voxel-wise average and standard deviation for each shell.

Problem loading figure sub-001/figures/sub-001_ses-003_acq-highres_dir-LR_desc-avgstd_bval-00700_dwi.svg. If the link below works, please try reloading the report in your browser.
Get figure file: sub-001/figures/sub-001_ses-003_acq-highres_dir-LR_desc-avgstd_bval-00700_dwi.svg

View of the background of the voxel-wise average of this DWI shell

This panel shows a mosaic enhancing the background around the head. Artifacts usually unveil themselves in the air surrounding the head, where no signal sources are present.

Get figure file: sub-001/figures/sub-001_ses-003_acq-highres_dir-LR_desc-background_bval-00700_dwi.svg

About

Errors

Reproducibility and provenance information

Thanks for using MRIQC. The following information may assist in reconstructing the provenance of the corresponding derivatives.

Execution environmentposix
Input filename/sub-001/ses-003/dwi/sub-001_ses-003_acq-highres_dir-LR_dwi.nii.gz
VersionsMRIQC24.0.0
VersionsNiPype1.8.7.dev0
VersionsTemplateFlow24.2.0.dev49+gb1f2eb2a.d20240413
md5sum8d678eeb145c95142cf747c91ba07239

AcquisitionMatrixPE104
AcquisitionNumber1
AcquisitionTime09:28:21.935000
B0FieldSource['003pepolarb0', '003phasediff']
BandwidthPerPixelPhaseEncode24.42
BaseResolution146
BodyPartExaminedBRAIN
CoilCombinationMethodAdaptive Combine
CoilStringHeadNeck_64
ConversionSoftwaredcm2niix
ConversionSoftwareVersionv1.0.20220720
Deltas[0.0272, 0.0469]
DerivedVendorReportedEchoSpacing0.000787501
DeviceSerialNumber67014
DiffusionSchemeMonopolar
DwellTime2.1e-06
EchoTime0.098
EchoTrainLength46
EffectiveEchoSpacing0.00039375
FlipAngle90
HeudiconvVersion1.0.0
ImageOrientationPatientDICOM[0.998307, 0.0136169, 0.0565397, -0.00331053, 0.983932, -0.178514]
ImageType['ORIGINAL', 'PRIMARY', 'DIFFUSION', 'NONE', 'ND', 'MFSPLIT']
ImageTypeText['ORIGINAL', 'PRIMARY', 'DIFFUSION', 'NONE']
ImagingFrequency123.248
InPlanePhaseEncodingDirectionDICOMROW
InstitutionAddressRue du Bugnon 21,Lausanne,District,CH,1011
InstitutionNameCHUV
MRAcquisitionType2D
MagneticFieldStrength3
ManufacturerSiemens
ManufacturersModelNameMAGNETOM Prisma Fit
ModalityMR
MultibandAccelerationFactor3
NonlinearGradientCorrectionFalse
ParallelReductionFactorInPlane2
PartialFourier0.875
PatientPositionHFS
PercentPhaseFOV71.2329
PercentSampling100
PhaseEncodingDirectioni-
PhaseEncodingSteps104
PhaseResolution1
PixelBandwidth1631
ProcedureStepDescriptionRESEARCH Oscar
ProtocolNamedwi-dwi_acq-highres_dir-LR__trigger_monopolar_71fovphase
PulseSequenceDetails%CustomerSeq%\ep2d_diff_trigg
ReceiveCoilActiveElementsHC1-7
ReceiveCoilNameHeadNeck_64
ReconMatrixPE104
RefLinesPE38
RepetitionTime7
SAR0.170934
ScanOptionsPFP\FS\PER
ScanningSequenceGR\EP
SequenceNameep_b0
SequenceVariantSK
SeriesDescriptiondwi-dwi_acq-highres_dir-LR__trigger_monopolar_71fovphase
SeriesNumber8
ShimSetting[8239, -5626, -6051, 601, -30, -356, 12, 9]
SliceThickness1.6
SliceTiming[0, 5.94, 0.135, 6.075, 0.27, 6.21, 0.405, 6.345, 0.54, 6.48, 0.675, 6.615, 0.81, 6.75, 0.945, 6.885, 1.08, 7.02, 1.215, 7.155, 1.35, 7.29, 1.485, 7.425, 1.62, 7.56, 1.755, 7.695, 1.89, 7.83, 2.025, 7.965, 2.16, 8.1, 2.295, 8.235, 2.43, 8.37, 2.565, 8.505, 2.7, 8.64, 2.835, 8.775, 2.97, 8.91, 3.105, 9.045, 3.24, 9.18, 3.375, 9.315, 3.51, 9.45, 3.645, 9.585, 3.78, 9.72, 3.915, 9.855, 4.05, 9.99, 4.185, 10.125, 4.32, 10.26, 4.455, 10.395, 4.59, 10.53, 4.725, 10.665, 4.86, 10.8, 4.995, 10.935, 5.13, 11.07, 5.265, 11.205, 5.4, 11.34, 5.535, 11.475, 5.67, 11.61, 5.805]
SoftwareVersionssyngo MR XA30
SpacingBetweenSlices1.6
StationNameLRG10884
TotalReadoutTime0.0405563
TxRefAmp250.232
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dcmmetashape[104, 146, 87, 280]
dcmmetaslice_dim2
dcmmetaversion0.6
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NumberOfShells4
bValues[0.0, 700.0, 1000.0, 2000.0, 3000.0]
bValuesEstimation[700.0, 1000.0, 2000.0, 3000.0]
bdiffsmax0.3479
bdiffsmean0.1641
bdiffsmedian0.1516
bdiffsmin0.0066
efcshell012.6052
efcshell021.2354
efcshell030.9768
efcshell040.6822
efcshell050.6815
fadegenerate0.0
fanans0.0
fbershell017.1419
fbershell0234.3061
fbershell0336.8622
fbershell0428.4444
fbershell0516.0
fdmean19.0561
fdnum279
fdperc99.64285714285714
ndc0.8163
sigmacc40.0303
sigmapca19.3218
sigmapiesno7.2633
snrccshell04.42
snrccshell1best4.28
snrccshell1worst4.28
snrccshell2best2.88
snrccshell2worst2.02
snrccshell3best2.48
snrccshell3worst1.51
snrccshell4best1.86
snrccshell4worst1.1
spikesglobal50.72
spikesslicei328.69
spikesslicej305.51
spikesslicek290.25
summarybgk213.4707
summarybgmad20.7564
summarybgmean46.7145
summarybgmedian20.0
summarybgn962788.0
summarybgp053.0
summarybgp95156.0
summarybgstdv111.2166
summaryfgk8.3725
summaryfgmad177.9123
summaryfgmean406.6639
summaryfgmedian315.0
summaryfgn358220.0
summaryfgp05111.0
summaryfgp951051.0
summaryfgstdv318.0573
summarywmk6.6877
summarywmmad83.0257
summarywmmean222.7102
summarywmmedian218.0
summarywmn97222.0
summarywmp0599.0
summarywmp95364.0
summarywmstdv85.2263
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