|
@@ -0,0 +1,710 @@
|
|
|
+<?xml version="1.0" encoding="utf-8" ?>
|
|
|
+<!DOCTYPE html PUBLIC "-//W3C//DTD XHTML 1.0 Transitional//EN" "http://www.w3.org/TR/xhtml1/DTD/xhtml1-transitional.dtd">
|
|
|
+<html xmlns="http://www.w3.org/1999/xhtml" xml:lang="en" lang="en">
|
|
|
+<head>
|
|
|
+<meta http-equiv="Content-Type" content="text/html; charset=utf-8" />
|
|
|
+<meta name="generator" content="NiReports: https://www.nipreps.org/" />
|
|
|
+<title>sub-001_ses-pilot019_task-qct_dir-RL_bold :: MRIQC's BOLD fMRI report</title>
|
|
|
+<script src="https://code.jquery.com/jquery-3.6.0.min.js" integrity="sha256-/xUj+3OJU5yExlq6GSYGSHk7tPXikynS7ogEvDej/m4=" crossorigin="anonymous"></script>
|
|
|
+<link href="https://cdn.jsdelivr.net/npm/bootstrap@5.2.3/dist/css/bootstrap.min.css" rel="stylesheet" integrity="sha384-rbsA2VBKQhggwzxH7pPCaAqO46MgnOM80zW1RWuH61DGLwZJEdK2Kadq2F9CUG65" crossorigin="anonymous">
|
|
|
+<script src="https://cdn.jsdelivr.net/npm/bootstrap@5.2.3/dist/js/bootstrap.bundle.min.js" integrity="sha384-kenU1KFdBIe4zVF0s0G1M5b4hcpxyD9F7jL+jjXkk+Q2h455rYXK/7HAuoJl+0I4" crossorigin="anonymous"></script>
|
|
|
+
|
|
|
+<script>
|
|
|
+var timestamp = Date.now()
|
|
|
+
|
|
|
+function read_form() {
|
|
|
+ var ds = "<unset>";
|
|
|
+ var sub = "sub-001_ses-pilot019_task-qct_dir-RL_echo-1_part-mag_bold.nii.gz";
|
|
|
+
|
|
|
+ var artifacts = [];
|
|
|
+ $('#qcartifacts-group input:checked').each(function() {
|
|
|
+ artifacts.push($(this).attr('name'));
|
|
|
+ });
|
|
|
+
|
|
|
+ var rating = $('#qcslider').val();
|
|
|
+ var payload = {
|
|
|
+ 'dataset': ds,
|
|
|
+ 'subject': sub,
|
|
|
+ 'rating': rating,
|
|
|
+ 'artifacts': artifacts,
|
|
|
+ 'time_sec': (Date.now() - timestamp) / 1000,
|
|
|
+ 'confidence': $('#qcextra-confidence').val(),
|
|
|
+ 'comments': $('#qcextra-comments').val()
|
|
|
+ };
|
|
|
+
|
|
|
+ var file = new Blob([JSON.stringify(payload)], {type: 'text/json'});
|
|
|
+ $('#btn-download').attr('href', URL.createObjectURL(file));
|
|
|
+ $('#btn-download').attr('download', payload['dataset'] + "_" + payload['subject'] + ".json");
|
|
|
+ return payload
|
|
|
+};
|
|
|
+
|
|
|
+function toggle_rating() {
|
|
|
+ if ($('#qcrating-menu').hasClass('d-none')) {
|
|
|
+ $('#qcrating-menu').removeClass('d-none');
|
|
|
+ $('#qcrating-toggler').prop('checked', true);
|
|
|
+ } else {
|
|
|
+ $('#qcrating-menu').addClass('d-none');
|
|
|
+ $('#qcrating-toggler').prop('checked', false);
|
|
|
+ }
|
|
|
+};
|
|
|
+
|
|
|
+$(window).on('load',function(){
|
|
|
+ var authorization = $('#btn-post').val()
|
|
|
+ if (authorization.includes("secret_token")) {
|
|
|
+ $('#btn-post').addClass('d-none');
|
|
|
+ };
|
|
|
+ timestamp = Date.now();
|
|
|
+});
|
|
|
+
|
|
|
+</script>
|
|
|
+<style type="text/css">
|
|
|
+/* The slider itself */
|
|
|
+.slider {
|
|
|
+ -webkit-appearance: none; /* Override default CSS styles */
|
|
|
+ appearance: none;
|
|
|
+ margin-bottom: 8px;
|
|
|
+ margin-left: 10%;
|
|
|
+ width: 80%;
|
|
|
+ height: 5px; /* Specified height */
|
|
|
+ background: #d3d3d3; /* Grey background */
|
|
|
+ outline: none; /* Remove outline */
|
|
|
+ opacity: 0.7; /* Set transparency (for mouse-over effects on hover) */
|
|
|
+ -webkit-transition: .2s; /* 0.2 seconds transition on hover */
|
|
|
+ transition: opacity .2s;
|
|
|
+}
|
|
|
+
|
|
|
+/* Mouse-over effects */
|
|
|
+.slider:hover {
|
|
|
+ opacity: 1; /* Fully shown on mouse-over */
|
|
|
+}
|
|
|
+
|
|
|
+.slider::-webkit-slider-thumb {
|
|
|
+ -webkit-appearance: none;
|
|
|
+ appearance: none;
|
|
|
+ width: 25px;
|
|
|
+ height: 25px;
|
|
|
+ border: 0;
|
|
|
+ background: url('https://raw.githubusercontent.com/nipreps/nireports/main/assets/slider-handle.png');
|
|
|
+ cursor: pointer;
|
|
|
+ z-index: 2000 !important;
|
|
|
+}
|
|
|
+
|
|
|
+.slider::-moz-range-thumb {
|
|
|
+ width: 25px;
|
|
|
+ height: 25px;
|
|
|
+ border: 0;
|
|
|
+ background: url('https://raw.githubusercontent.com/nipreps/nireports/main/assets/slider-handle.png');
|
|
|
+ cursor: pointer;
|
|
|
+ z-index: 2000 !important;
|
|
|
+}
|
|
|
+
|
|
|
+</style>
|
|
|
+</head>
|
|
|
+<body style="font-family: helvetica;">
|
|
|
+<nav class="navbar fixed-top navbar-expand-lg bg-light">
|
|
|
+<div class="container-fluid">
|
|
|
+<div class="collapse navbar-collapse" id="navbarSupportedContent">
|
|
|
+ <ul class="navbar-nav me-auto mb-2 mb-lg-0">
|
|
|
+ <li class="nav-item dropdown">
|
|
|
+ <a class="nav-link dropdown-toggle" id="navbarBasic echo-wise reports" role="button" data-bs-toggle="dropdown" aria-expanded="false" href="#Basic echo-wise reports">
|
|
|
+ Basic echo-wise reports
|
|
|
+ </a>
|
|
|
+ <ul class="dropdown-menu">
|
|
|
+ <li><a class="dropdown-item" href="#datatype-figures_desc-stdev_direction-RL_echo-1_session-pilot019_subject-001_suffix-bold_task-qct">Reports for: echo <span class="bids-entity">1</span>.</a></li>
|
|
|
+ <li><a class="dropdown-item" href="#datatype-figures_desc-stdev_direction-RL_echo-2_session-pilot019_subject-001_suffix-bold_task-qct">Reports for: echo <span class="bids-entity">2</span>.</a></li>
|
|
|
+ <li><a class="dropdown-item" href="#datatype-figures_desc-stdev_direction-RL_echo-3_session-pilot019_subject-001_suffix-bold_task-qct">Reports for: echo <span class="bids-entity">3</span>.</a></li>
|
|
|
+ <li><a class="dropdown-item" href="#datatype-figures_desc-stdev_direction-RL_echo-4_session-pilot019_subject-001_suffix-bold_task-qct">Reports for: echo <span class="bids-entity">4</span>.</a></li>
|
|
|
+ </ul>
|
|
|
+ </li>
|
|
|
+ <li class="nav-item dropdown">
|
|
|
+ <a class="nav-link dropdown-toggle" id="navbarExtended echo-wise reports" role="button" data-bs-toggle="dropdown" aria-expanded="false" href="#Extended echo-wise reports">
|
|
|
+ Extended echo-wise reports
|
|
|
+ </a>
|
|
|
+ <ul class="dropdown-menu">
|
|
|
+ <li><a class="dropdown-item" href="#datatype-figures_desc-mean_direction-RL_echo-1_session-pilot019_subject-001_suffix-bold_task-qct">Reports for: echo <span class="bids-entity">1</span>.</a></li>
|
|
|
+ <li><a class="dropdown-item" href="#datatype-figures_desc-mean_direction-RL_echo-2_session-pilot019_subject-001_suffix-bold_task-qct">Reports for: echo <span class="bids-entity">2</span>.</a></li>
|
|
|
+ <li><a class="dropdown-item" href="#datatype-figures_desc-mean_direction-RL_echo-3_session-pilot019_subject-001_suffix-bold_task-qct">Reports for: echo <span class="bids-entity">3</span>.</a></li>
|
|
|
+ <li><a class="dropdown-item" href="#datatype-figures_desc-mean_direction-RL_echo-4_session-pilot019_subject-001_suffix-bold_task-qct">Reports for: echo <span class="bids-entity">4</span>.</a></li>
|
|
|
+ </ul>
|
|
|
+ </li>
|
|
|
+ <li class="nav-item"><a class="nav-link" href="#Extended reports shared across echos">Extended reports shared across echos</a></li>
|
|
|
+ <li class="nav-item dropdown">
|
|
|
+ <a class="nav-link dropdown-toggle" id="navbarAbout" role="button" data-bs-toggle="dropdown" aria-expanded="false" href="#About">
|
|
|
+ About
|
|
|
+ </a>
|
|
|
+ <ul class="dropdown-menu">
|
|
|
+ <li><a class="dropdown-item" href="#errors">Errors</a></li>
|
|
|
+ <li><a class="dropdown-item" href="#meta-about-metadata">Reproducibility and provenance information</a></li>
|
|
|
+ </ul>
|
|
|
+ </li>
|
|
|
+ </ul>
|
|
|
+</div>
|
|
|
+</div>
|
|
|
+<div class="d-flex flex-row-reverse">
|
|
|
+<div class="form-check form-switch align-self-center flex-fill me-4">
|
|
|
+<input class="form-check-input" type="checkbox" id="qcrating-toggler"></input>
|
|
|
+<label class="form-check-label" style="width: 100pt;" for="qcrating-toggler">Rating widget</label>
|
|
|
+</div>
|
|
|
+</div>
|
|
|
+</nav>
|
|
|
+<noscript>
|
|
|
+ <h1 class="text-danger"> The navigation menu uses Javascript. Without it this report might not work as expected </h1>
|
|
|
+</noscript>
|
|
|
+
|
|
|
+ <div id="Basic echo-wise reports" class="mt-5">
|
|
|
+ <h1 class="sub-report-title pt-5 ps-4">Basic echo-wise reports</h1>
|
|
|
+ <div id="datatype-figures_desc-stdev_direction-RL_echo-1_session-pilot019_subject-001_suffix-bold_task-qct" class="ps-4 pe-4 mb-2">
|
|
|
+<h2 class="sub-report-group mt-4">Reports for: echo <span class="bids-entity">1</span>.</h2><h3 class="run-title mt-3">Standard deviation of signal through time</h3><p class="elem-caption">The voxel-wise standard deviation of the signal (variability along time).</p> <div class="reportlet">
|
|
|
+<img class="svg-reportlet" src="./sub-001/figures/sub-001_ses-pilot019_task-qct_dir-RL_echo-1_desc-stdev_bold.svg" style="width: 100%" />
|
|
|
+</div>
|
|
|
+<small>Get figure file: <a href="./sub-001/figures/sub-001_ses-pilot019_task-qct_dir-RL_echo-1_desc-stdev_bold.svg" target="_blank">sub-001/figures/sub-001_ses-pilot019_task-qct_dir-RL_echo-1_desc-stdev_bold.svg</a></small>
|
|
|
+
|
|
|
+ </div>
|
|
|
+ <div id="datatype-figures_desc-background_direction-RL_echo-1_session-pilot019_subject-001_suffix-bold_task-qct" class="ps-4 pe-4 mb-2">
|
|
|
+<h3 class="run-title mt-3">View of the background of the voxel-wise average of the BOLD timeseries</h3><p class="elem-caption">This panel shows a mosaic enhancing the background around the head. Artifacts usually unveil themselves in the air surrounding the head, where no signal sources are present.</p> <div class="reportlet">
|
|
|
+<img class="svg-reportlet" src="./sub-001/figures/sub-001_ses-pilot019_task-qct_dir-RL_echo-1_desc-background_bold.svg" style="width: 100%" />
|
|
|
+</div>
|
|
|
+<small>Get figure file: <a href="./sub-001/figures/sub-001_ses-pilot019_task-qct_dir-RL_echo-1_desc-background_bold.svg" target="_blank">sub-001/figures/sub-001_ses-pilot019_task-qct_dir-RL_echo-1_desc-background_bold.svg</a></small>
|
|
|
+
|
|
|
+ </div>
|
|
|
+ <div id="datatype-figures_desc-zoomed_direction-RL_echo-1_session-pilot019_subject-001_suffix-bold_task-qct" class="ps-4 pe-4 mb-2">
|
|
|
+<h3 class="run-title mt-3">Voxel-wise average of BOLD time-series, zoomed-in covering just the brain</h3><p class="elem-caption">This panel shows a mosaic of the brain. This mosaic is the most suitable to screen head-motion intensity inhomogeneities, global/local noise, signal leakage (for example, from the eyeballs and across the phase-encoding axis), etc.</p> <div class="reportlet">
|
|
|
+<img class="svg-reportlet" src="./sub-001/figures/sub-001_ses-pilot019_task-qct_dir-RL_echo-1_desc-zoomed_bold.svg" style="width: 100%" />
|
|
|
+</div>
|
|
|
+<small>Get figure file: <a href="./sub-001/figures/sub-001_ses-pilot019_task-qct_dir-RL_echo-1_desc-zoomed_bold.svg" target="_blank">sub-001/figures/sub-001_ses-pilot019_task-qct_dir-RL_echo-1_desc-zoomed_bold.svg</a></small>
|
|
|
+
|
|
|
+ </div>
|
|
|
+ <div id="datatype-figures_desc-carpet_direction-RL_echo-1_session-pilot019_subject-001_suffix-bold_task-qct" class="ps-4 pe-4 mb-2">
|
|
|
+<h3 class="run-title mt-3">Carpetplot and nuisance signals</h3><p class="elem-caption">The so-called «carpetplot» may assist in assessing head-motion derived artifacts and respiation effects.</p> <div class="reportlet">
|
|
|
+<img class="svg-reportlet" src="./sub-001/figures/sub-001_ses-pilot019_task-qct_dir-RL_echo-1_desc-carpet_bold.svg" style="width: 100%" />
|
|
|
+</div>
|
|
|
+<small>Get figure file: <a href="./sub-001/figures/sub-001_ses-pilot019_task-qct_dir-RL_echo-1_desc-carpet_bold.svg" target="_blank">sub-001/figures/sub-001_ses-pilot019_task-qct_dir-RL_echo-1_desc-carpet_bold.svg</a></small>
|
|
|
+
|
|
|
+ </div>
|
|
|
+ <div id="datatype-figures_desc-stdev_direction-RL_echo-2_session-pilot019_subject-001_suffix-bold_task-qct" class="ps-4 pe-4 mb-2">
|
|
|
+<h2 class="sub-report-group mt-4">Reports for: echo <span class="bids-entity">2</span>.</h2><h3 class="run-title mt-3">Standard deviation of signal through time</h3><p class="elem-caption">The voxel-wise standard deviation of the signal (variability along time).</p> <div class="reportlet">
|
|
|
+<img class="svg-reportlet" src="./sub-001/figures/sub-001_ses-pilot019_task-qct_dir-RL_echo-2_desc-stdev_bold.svg" style="width: 100%" />
|
|
|
+</div>
|
|
|
+<small>Get figure file: <a href="./sub-001/figures/sub-001_ses-pilot019_task-qct_dir-RL_echo-2_desc-stdev_bold.svg" target="_blank">sub-001/figures/sub-001_ses-pilot019_task-qct_dir-RL_echo-2_desc-stdev_bold.svg</a></small>
|
|
|
+
|
|
|
+ </div>
|
|
|
+ <div id="datatype-figures_desc-background_direction-RL_echo-2_session-pilot019_subject-001_suffix-bold_task-qct" class="ps-4 pe-4 mb-2">
|
|
|
+<h3 class="run-title mt-3">View of the background of the voxel-wise average of the BOLD timeseries</h3><p class="elem-caption">This panel shows a mosaic enhancing the background around the head. Artifacts usually unveil themselves in the air surrounding the head, where no signal sources are present.</p> <div class="reportlet">
|
|
|
+<img class="svg-reportlet" src="./sub-001/figures/sub-001_ses-pilot019_task-qct_dir-RL_echo-2_desc-background_bold.svg" style="width: 100%" />
|
|
|
+</div>
|
|
|
+<small>Get figure file: <a href="./sub-001/figures/sub-001_ses-pilot019_task-qct_dir-RL_echo-2_desc-background_bold.svg" target="_blank">sub-001/figures/sub-001_ses-pilot019_task-qct_dir-RL_echo-2_desc-background_bold.svg</a></small>
|
|
|
+
|
|
|
+ </div>
|
|
|
+ <div id="datatype-figures_desc-zoomed_direction-RL_echo-2_session-pilot019_subject-001_suffix-bold_task-qct" class="ps-4 pe-4 mb-2">
|
|
|
+<h3 class="run-title mt-3">Voxel-wise average of BOLD time-series, zoomed-in covering just the brain</h3><p class="elem-caption">This panel shows a mosaic of the brain. This mosaic is the most suitable to screen head-motion intensity inhomogeneities, global/local noise, signal leakage (for example, from the eyeballs and across the phase-encoding axis), etc.</p> <div class="reportlet">
|
|
|
+<img class="svg-reportlet" src="./sub-001/figures/sub-001_ses-pilot019_task-qct_dir-RL_echo-2_desc-zoomed_bold.svg" style="width: 100%" />
|
|
|
+</div>
|
|
|
+<small>Get figure file: <a href="./sub-001/figures/sub-001_ses-pilot019_task-qct_dir-RL_echo-2_desc-zoomed_bold.svg" target="_blank">sub-001/figures/sub-001_ses-pilot019_task-qct_dir-RL_echo-2_desc-zoomed_bold.svg</a></small>
|
|
|
+
|
|
|
+ </div>
|
|
|
+ <div id="datatype-figures_desc-carpet_direction-RL_echo-2_session-pilot019_subject-001_suffix-bold_task-qct" class="ps-4 pe-4 mb-2">
|
|
|
+<h3 class="run-title mt-3">Carpetplot and nuisance signals</h3><p class="elem-caption">The so-called «carpetplot» may assist in assessing head-motion derived artifacts and respiation effects.</p> <div class="reportlet">
|
|
|
+<img class="svg-reportlet" src="./sub-001/figures/sub-001_ses-pilot019_task-qct_dir-RL_echo-2_desc-carpet_bold.svg" style="width: 100%" />
|
|
|
+</div>
|
|
|
+<small>Get figure file: <a href="./sub-001/figures/sub-001_ses-pilot019_task-qct_dir-RL_echo-2_desc-carpet_bold.svg" target="_blank">sub-001/figures/sub-001_ses-pilot019_task-qct_dir-RL_echo-2_desc-carpet_bold.svg</a></small>
|
|
|
+
|
|
|
+ </div>
|
|
|
+ <div id="datatype-figures_desc-stdev_direction-RL_echo-3_session-pilot019_subject-001_suffix-bold_task-qct" class="ps-4 pe-4 mb-2">
|
|
|
+<h2 class="sub-report-group mt-4">Reports for: echo <span class="bids-entity">3</span>.</h2><h3 class="run-title mt-3">Standard deviation of signal through time</h3><p class="elem-caption">The voxel-wise standard deviation of the signal (variability along time).</p> <div class="reportlet">
|
|
|
+<img class="svg-reportlet" src="./sub-001/figures/sub-001_ses-pilot019_task-qct_dir-RL_echo-3_desc-stdev_bold.svg" style="width: 100%" />
|
|
|
+</div>
|
|
|
+<small>Get figure file: <a href="./sub-001/figures/sub-001_ses-pilot019_task-qct_dir-RL_echo-3_desc-stdev_bold.svg" target="_blank">sub-001/figures/sub-001_ses-pilot019_task-qct_dir-RL_echo-3_desc-stdev_bold.svg</a></small>
|
|
|
+
|
|
|
+ </div>
|
|
|
+ <div id="datatype-figures_desc-background_direction-RL_echo-3_session-pilot019_subject-001_suffix-bold_task-qct" class="ps-4 pe-4 mb-2">
|
|
|
+<h3 class="run-title mt-3">View of the background of the voxel-wise average of the BOLD timeseries</h3><p class="elem-caption">This panel shows a mosaic enhancing the background around the head. Artifacts usually unveil themselves in the air surrounding the head, where no signal sources are present.</p> <div class="reportlet">
|
|
|
+<img class="svg-reportlet" src="./sub-001/figures/sub-001_ses-pilot019_task-qct_dir-RL_echo-3_desc-background_bold.svg" style="width: 100%" />
|
|
|
+</div>
|
|
|
+<small>Get figure file: <a href="./sub-001/figures/sub-001_ses-pilot019_task-qct_dir-RL_echo-3_desc-background_bold.svg" target="_blank">sub-001/figures/sub-001_ses-pilot019_task-qct_dir-RL_echo-3_desc-background_bold.svg</a></small>
|
|
|
+
|
|
|
+ </div>
|
|
|
+ <div id="datatype-figures_desc-zoomed_direction-RL_echo-3_session-pilot019_subject-001_suffix-bold_task-qct" class="ps-4 pe-4 mb-2">
|
|
|
+<h3 class="run-title mt-3">Voxel-wise average of BOLD time-series, zoomed-in covering just the brain</h3><p class="elem-caption">This panel shows a mosaic of the brain. This mosaic is the most suitable to screen head-motion intensity inhomogeneities, global/local noise, signal leakage (for example, from the eyeballs and across the phase-encoding axis), etc.</p> <div class="reportlet">
|
|
|
+<img class="svg-reportlet" src="./sub-001/figures/sub-001_ses-pilot019_task-qct_dir-RL_echo-3_desc-zoomed_bold.svg" style="width: 100%" />
|
|
|
+</div>
|
|
|
+<small>Get figure file: <a href="./sub-001/figures/sub-001_ses-pilot019_task-qct_dir-RL_echo-3_desc-zoomed_bold.svg" target="_blank">sub-001/figures/sub-001_ses-pilot019_task-qct_dir-RL_echo-3_desc-zoomed_bold.svg</a></small>
|
|
|
+
|
|
|
+ </div>
|
|
|
+ <div id="datatype-figures_desc-carpet_direction-RL_echo-3_session-pilot019_subject-001_suffix-bold_task-qct" class="ps-4 pe-4 mb-2">
|
|
|
+<h3 class="run-title mt-3">Carpetplot and nuisance signals</h3><p class="elem-caption">The so-called «carpetplot» may assist in assessing head-motion derived artifacts and respiation effects.</p> <div class="reportlet">
|
|
|
+<img class="svg-reportlet" src="./sub-001/figures/sub-001_ses-pilot019_task-qct_dir-RL_echo-3_desc-carpet_bold.svg" style="width: 100%" />
|
|
|
+</div>
|
|
|
+<small>Get figure file: <a href="./sub-001/figures/sub-001_ses-pilot019_task-qct_dir-RL_echo-3_desc-carpet_bold.svg" target="_blank">sub-001/figures/sub-001_ses-pilot019_task-qct_dir-RL_echo-3_desc-carpet_bold.svg</a></small>
|
|
|
+
|
|
|
+ </div>
|
|
|
+ <div id="datatype-figures_desc-stdev_direction-RL_echo-4_session-pilot019_subject-001_suffix-bold_task-qct" class="ps-4 pe-4 mb-2">
|
|
|
+<h2 class="sub-report-group mt-4">Reports for: echo <span class="bids-entity">4</span>.</h2><h3 class="run-title mt-3">Standard deviation of signal through time</h3><p class="elem-caption">The voxel-wise standard deviation of the signal (variability along time).</p> <div class="reportlet">
|
|
|
+<img class="svg-reportlet" src="./sub-001/figures/sub-001_ses-pilot019_task-qct_dir-RL_echo-4_desc-stdev_bold.svg" style="width: 100%" />
|
|
|
+</div>
|
|
|
+<small>Get figure file: <a href="./sub-001/figures/sub-001_ses-pilot019_task-qct_dir-RL_echo-4_desc-stdev_bold.svg" target="_blank">sub-001/figures/sub-001_ses-pilot019_task-qct_dir-RL_echo-4_desc-stdev_bold.svg</a></small>
|
|
|
+
|
|
|
+ </div>
|
|
|
+ <div id="datatype-figures_desc-background_direction-RL_echo-4_session-pilot019_subject-001_suffix-bold_task-qct" class="ps-4 pe-4 mb-2">
|
|
|
+<h3 class="run-title mt-3">View of the background of the voxel-wise average of the BOLD timeseries</h3><p class="elem-caption">This panel shows a mosaic enhancing the background around the head. Artifacts usually unveil themselves in the air surrounding the head, where no signal sources are present.</p> <div class="reportlet">
|
|
|
+<img class="svg-reportlet" src="./sub-001/figures/sub-001_ses-pilot019_task-qct_dir-RL_echo-4_desc-background_bold.svg" style="width: 100%" />
|
|
|
+</div>
|
|
|
+<small>Get figure file: <a href="./sub-001/figures/sub-001_ses-pilot019_task-qct_dir-RL_echo-4_desc-background_bold.svg" target="_blank">sub-001/figures/sub-001_ses-pilot019_task-qct_dir-RL_echo-4_desc-background_bold.svg</a></small>
|
|
|
+
|
|
|
+ </div>
|
|
|
+ <div id="datatype-figures_desc-zoomed_direction-RL_echo-4_session-pilot019_subject-001_suffix-bold_task-qct" class="ps-4 pe-4 mb-2">
|
|
|
+<h3 class="run-title mt-3">Voxel-wise average of BOLD time-series, zoomed-in covering just the brain</h3><p class="elem-caption">This panel shows a mosaic of the brain. This mosaic is the most suitable to screen head-motion intensity inhomogeneities, global/local noise, signal leakage (for example, from the eyeballs and across the phase-encoding axis), etc.</p> <div class="reportlet">
|
|
|
+<img class="svg-reportlet" src="./sub-001/figures/sub-001_ses-pilot019_task-qct_dir-RL_echo-4_desc-zoomed_bold.svg" style="width: 100%" />
|
|
|
+</div>
|
|
|
+<small>Get figure file: <a href="./sub-001/figures/sub-001_ses-pilot019_task-qct_dir-RL_echo-4_desc-zoomed_bold.svg" target="_blank">sub-001/figures/sub-001_ses-pilot019_task-qct_dir-RL_echo-4_desc-zoomed_bold.svg</a></small>
|
|
|
+
|
|
|
+ </div>
|
|
|
+ <div id="datatype-figures_desc-carpet_direction-RL_echo-4_session-pilot019_subject-001_suffix-bold_task-qct" class="ps-4 pe-4 mb-2">
|
|
|
+<h3 class="run-title mt-3">Carpetplot and nuisance signals</h3><p class="elem-caption">The so-called «carpetplot» may assist in assessing head-motion derived artifacts and respiation effects.</p> <div class="reportlet">
|
|
|
+<img class="svg-reportlet" src="./sub-001/figures/sub-001_ses-pilot019_task-qct_dir-RL_echo-4_desc-carpet_bold.svg" style="width: 100%" />
|
|
|
+</div>
|
|
|
+<small>Get figure file: <a href="./sub-001/figures/sub-001_ses-pilot019_task-qct_dir-RL_echo-4_desc-carpet_bold.svg" target="_blank">sub-001/figures/sub-001_ses-pilot019_task-qct_dir-RL_echo-4_desc-carpet_bold.svg</a></small>
|
|
|
+
|
|
|
+ </div>
|
|
|
+ </div>
|
|
|
+ <div id="Extended echo-wise reports" class="mt-5">
|
|
|
+ <h1 class="sub-report-title pt-5 ps-4">Extended echo-wise reports</h1>
|
|
|
+ <div id="datatype-figures_desc-mean_direction-RL_echo-1_session-pilot019_subject-001_suffix-bold_task-qct" class="ps-4 pe-4 mb-2">
|
|
|
+<h2 class="sub-report-group mt-4">Reports for: echo <span class="bids-entity">1</span>.</h2><h3 class="run-title mt-3">Voxel-wise average of BOLD time-series</h3><p class="elem-caption">The average signal calculated across the last axis (time).</p> <div class="reportlet">
|
|
|
+<img class="svg-reportlet" src="./sub-001/figures/sub-001_ses-pilot019_task-qct_dir-RL_echo-1_desc-mean_bold.svg" style="width: 100%" />
|
|
|
+</div>
|
|
|
+<small>Get figure file: <a href="./sub-001/figures/sub-001_ses-pilot019_task-qct_dir-RL_echo-1_desc-mean_bold.svg" target="_blank">sub-001/figures/sub-001_ses-pilot019_task-qct_dir-RL_echo-1_desc-mean_bold.svg</a></small>
|
|
|
+
|
|
|
+ </div>
|
|
|
+ <div id="datatype-figures_desc-mean_direction-RL_echo-2_session-pilot019_subject-001_suffix-bold_task-qct" class="ps-4 pe-4 mb-2">
|
|
|
+<h2 class="sub-report-group mt-4">Reports for: echo <span class="bids-entity">2</span>.</h2><h3 class="run-title mt-3">Voxel-wise average of BOLD time-series</h3><p class="elem-caption">The average signal calculated across the last axis (time).</p> <div class="reportlet">
|
|
|
+<img class="svg-reportlet" src="./sub-001/figures/sub-001_ses-pilot019_task-qct_dir-RL_echo-2_desc-mean_bold.svg" style="width: 100%" />
|
|
|
+</div>
|
|
|
+<small>Get figure file: <a href="./sub-001/figures/sub-001_ses-pilot019_task-qct_dir-RL_echo-2_desc-mean_bold.svg" target="_blank">sub-001/figures/sub-001_ses-pilot019_task-qct_dir-RL_echo-2_desc-mean_bold.svg</a></small>
|
|
|
+
|
|
|
+ </div>
|
|
|
+ <div id="datatype-figures_desc-mean_direction-RL_echo-3_session-pilot019_subject-001_suffix-bold_task-qct" class="ps-4 pe-4 mb-2">
|
|
|
+<h2 class="sub-report-group mt-4">Reports for: echo <span class="bids-entity">3</span>.</h2><h3 class="run-title mt-3">Voxel-wise average of BOLD time-series</h3><p class="elem-caption">The average signal calculated across the last axis (time).</p> <div class="reportlet">
|
|
|
+<img class="svg-reportlet" src="./sub-001/figures/sub-001_ses-pilot019_task-qct_dir-RL_echo-3_desc-mean_bold.svg" style="width: 100%" />
|
|
|
+</div>
|
|
|
+<small>Get figure file: <a href="./sub-001/figures/sub-001_ses-pilot019_task-qct_dir-RL_echo-3_desc-mean_bold.svg" target="_blank">sub-001/figures/sub-001_ses-pilot019_task-qct_dir-RL_echo-3_desc-mean_bold.svg</a></small>
|
|
|
+
|
|
|
+ </div>
|
|
|
+ <div id="datatype-figures_desc-mean_direction-RL_echo-4_session-pilot019_subject-001_suffix-bold_task-qct" class="ps-4 pe-4 mb-2">
|
|
|
+<h2 class="sub-report-group mt-4">Reports for: echo <span class="bids-entity">4</span>.</h2><h3 class="run-title mt-3">Voxel-wise average of BOLD time-series</h3><p class="elem-caption">The average signal calculated across the last axis (time).</p> <div class="reportlet">
|
|
|
+<img class="svg-reportlet" src="./sub-001/figures/sub-001_ses-pilot019_task-qct_dir-RL_echo-4_desc-mean_bold.svg" style="width: 100%" />
|
|
|
+</div>
|
|
|
+<small>Get figure file: <a href="./sub-001/figures/sub-001_ses-pilot019_task-qct_dir-RL_echo-4_desc-mean_bold.svg" target="_blank">sub-001/figures/sub-001_ses-pilot019_task-qct_dir-RL_echo-4_desc-mean_bold.svg</a></small>
|
|
|
+
|
|
|
+ </div>
|
|
|
+ </div>
|
|
|
+ <div id="Extended reports shared across echos" class="mt-5">
|
|
|
+ <h1 class="sub-report-title pt-5 ps-4">Extended reports shared across echos</h1>
|
|
|
+ <div id="datatype-figures_desc-brainmask_direction-RL_session-pilot019_subject-001_suffix-bold_task-qct" class="ps-4 pe-4 mb-2">
|
|
|
+<h3 class="run-title mt-3">Brain extraction performance</h3><p class="elem-caption">Brain mask as internally extracted by MRIQC. Defects on the brainmask could indicate problematic aspects of the image quality-wise.</p> <div class="reportlet">
|
|
|
+<img class="svg-reportlet" src="./sub-001/figures/sub-001_ses-pilot019_task-qct_dir-RL_desc-brainmask_bold.svg" style="width: 100%" />
|
|
|
+</div>
|
|
|
+<small>Get figure file: <a href="./sub-001/figures/sub-001_ses-pilot019_task-qct_dir-RL_desc-brainmask_bold.svg" target="_blank">sub-001/figures/sub-001_ses-pilot019_task-qct_dir-RL_desc-brainmask_bold.svg</a></small>
|
|
|
+
|
|
|
+ </div>
|
|
|
+ <div id="datatype-figures_desc-norm_direction-RL_session-pilot019_subject-001_suffix-bold_task-qct" class="ps-4 pe-4 mb-2">
|
|
|
+<h3 class="run-title mt-3">Spatial normalization of the anatomical image</h3><p class="elem-caption">This panel shows a <em>quick-and-dirty</em> nonlinear registration into the <code>MNI152NLin2009cAsym</code> template accessed with <a href="https://templateflow.org/browse" target="_blank"><em>TemplateFlow</em></a>.</p> <div class="reportlet">
|
|
|
+<object class="svg-reportlet" type="image/svg+xml" data="./sub-001/figures/sub-001_ses-pilot019_task-qct_dir-RL_desc-norm_bold.svg" style="">
|
|
|
+Problem loading figure sub-001/figures/sub-001_ses-pilot019_task-qct_dir-RL_desc-norm_bold.svg. If the link below works, please try reloading the report in your browser.</object>
|
|
|
+</div>
|
|
|
+<small>Get figure file: <a href="./sub-001/figures/sub-001_ses-pilot019_task-qct_dir-RL_desc-norm_bold.svg" target="_blank">sub-001/figures/sub-001_ses-pilot019_task-qct_dir-RL_desc-norm_bold.svg</a></small>
|
|
|
+
|
|
|
+ </div>
|
|
|
+ </div>
|
|
|
+ <div id="About" class="mt-5">
|
|
|
+ <h1 class="sub-report-title pt-5 ps-4">About</h1>
|
|
|
+ <div id="errors" class="ps-4 pe-4 mb-2">
|
|
|
+<h2 class="sub-report-group mt-4">Errors</h2> <p class="alert alert-success" role="alert">No errors to report!</p>
|
|
|
+ </div>
|
|
|
+ <div id="meta-about-metadata" class="ps-4 pe-4 mb-2">
|
|
|
+<h2 class="sub-report-group mt-4">Reproducibility and provenance information</h2><p class="elem-caption">Thanks for using <em>MRIQC</em>. The following information may assist in
|
|
|
+reconstructing the provenance of the corresponding derivatives.
|
|
|
+</p> <div class="accordion accordion-flush" id="about-metadata">
|
|
|
+
|
|
|
+
|
|
|
+ <div class="accordion-item">
|
|
|
+ <h2 class="accordion-header" id="about-metadata-0">
|
|
|
+ <button class="accordion-button collapsed" type="button" data-bs-toggle="collapse" data-bs-target="#about-metadata-0-collapse" aria-controls="about-metadata-0-collapse">
|
|
|
+ Provenance Information
|
|
|
+ </button>
|
|
|
+ </h2>
|
|
|
+ <div id="about-metadata-0-collapse" class="accordion-collapse collapse" aria-labelledby="about-metadata-0-heading" data-bs-parent="#about-metadata-0">
|
|
|
+ <div class="accordion-body metadata-table">
|
|
|
+ <table id="about-metadata-table-0" class="table table-sm table-striped">
|
|
|
+<tr><td colspan=2>Execution environment</td><td>singularity</td></tr>
|
|
|
+<tr><td colspan=2>Input filename</td><td><BIDS root>/sub-001/ses-pilot019/func/sub-001_ses-pilot019_task-qct_dir-RL_echo-1_part-mag_bold.nii.gz</td></tr>
|
|
|
+<tr><td>Versions</td><td>MRIQC</td><td>24.1.0.dev0+g3fe90466.d20240417</td></tr>
|
|
|
+<tr><td>Versions</td><td>NiPype</td><td>1.8.6</td></tr>
|
|
|
+<tr><td>Versions</td><td>TemplateFlow</td><td>24.2.0</td></tr>
|
|
|
+<tr><td colspan=2>md5sum</td><td>402426d040d3bd309cc49f25f5990220</td></tr>
|
|
|
+</table>
|
|
|
+
|
|
|
+ </div>
|
|
|
+ </div>
|
|
|
+ </div>
|
|
|
+
|
|
|
+
|
|
|
+ <div class="accordion-item">
|
|
|
+ <h2 class="accordion-header" id="about-metadata-1">
|
|
|
+ <button class="accordion-button collapsed" type="button" data-bs-toggle="collapse" data-bs-target="#about-metadata-1-collapse" aria-controls="about-metadata-1-collapse">
|
|
|
+ Dataset Information
|
|
|
+ </button>
|
|
|
+ </h2>
|
|
|
+ <div id="about-metadata-1-collapse" class="accordion-collapse collapse" aria-labelledby="about-metadata-1-heading" data-bs-parent="#about-metadata-1">
|
|
|
+ <div class="accordion-body metadata-table">
|
|
|
+ <table id="about-metadata-table-1" class="table table-sm table-striped">
|
|
|
+<tr><td>AcquisitionDuration</td><td>188.475</td></tr>
|
|
|
+<tr><td>AcquisitionMatrixPE</td><td>76</td></tr>
|
|
|
+<tr><td>AcquisitionTime</td><td>19:25:36.225000</td></tr>
|
|
|
+<tr><td>B0FieldSource</td><td>['pilot019pepolarbold', 'pilot019phasediff']</td></tr>
|
|
|
+<tr><td>BandwidthPerPixelPhaseEncode</td><td>40.486</td></tr>
|
|
|
+<tr><td>BaseResolution</td><td>102</td></tr>
|
|
|
+<tr><td>DerivedVendorReportedEchoSpacing</td><td>0.000649997</td></tr>
|
|
|
+<tr><td>DwellTime</td><td>2.5e-06</td></tr>
|
|
|
+<tr><td>EchoNumber</td><td>1</td></tr>
|
|
|
+<tr><td>EchoTime</td><td>0.0126</td></tr>
|
|
|
+<tr><td>EchoTrainLength</td><td>28</td></tr>
|
|
|
+<tr><td>EffectiveEchoSpacing</td><td>0.000324999</td></tr>
|
|
|
+<tr><td>FlipAngle</td><td>64</td></tr>
|
|
|
+<tr><td>ImageOrientationPatientDICOM</td><td>[0.998355, 0.0470003, 0.0328234, -0.0320723, 0.932498, -0.359747]</td></tr>
|
|
|
+<tr><td>ImageType</td><td>['ORIGINAL', 'PRIMARY', 'FMRI', 'NONE']</td></tr>
|
|
|
+<tr><td>ImageTypeText</td><td>['ORIGINAL', 'PRIMARY', 'M', 'MB', 'TE1', 'DIS2D']</td></tr>
|
|
|
+<tr><td>InPlanePhaseEncodingDirectionDICOM</td><td>ROW</td></tr>
|
|
|
+<tr><td>PercentPhaseFOV</td><td>74.5098</td></tr>
|
|
|
+<tr><td>PhaseEchoTime1</td><td>0.0126</td></tr>
|
|
|
+<tr><td>PhaseEchoTime2</td><td>0.0322</td></tr>
|
|
|
+<tr><td>PhaseEncodingDirection</td><td>i</td></tr>
|
|
|
+<tr><td>PixelBandwidth</td><td>1961</td></tr>
|
|
|
+<tr><td>ProtocolName</td><td>func-bold_task-qct_dir-RL__cmrr_me4_sms4</td></tr>
|
|
|
+<tr><td>PulseSequenceName</td><td>epfid2d4_76</td></tr>
|
|
|
+<tr><td>ReceiveCoilActiveElements</td><td>HC1-7</td></tr>
|
|
|
+<tr><td>ReconMatrixPE</td><td>76</td></tr>
|
|
|
+<tr><td>RefLinesPE</td><td>18</td></tr>
|
|
|
+<tr><td>RepetitionTime</td><td>1.6</td></tr>
|
|
|
+<tr><td>SequenceVariant</td><td>SK\SS\OSP</td></tr>
|
|
|
+<tr><td>SeriesDescription</td><td>func-bold_task-qct_dir-RL__cmrr_me4_sms4</td></tr>
|
|
|
+<tr><td>SeriesNumber</td><td>19</td></tr>
|
|
|
+<tr><td>ShimSetting</td><td>[8225, -5613, -5993, 688, -109, -204, 37, 36]</td></tr>
|
|
|
+<tr><td>SliceThickness</td><td>2.2</td></tr>
|
|
|
+<tr><td>SliceTiming</td><td>[0, 0.845, 0.1075, 0.95, 0.2125, 1.055, 0.3175, 1.16, 0.4225, 1.265, 0.5275, 1.37, 0.6325, 1.475, 0.7375, 0, 0.845, 0.1075, 0.95, 0.2125, 1.055, 0.3175, 1.16, 0.4225, 1.265, 0.5275, 1.37, 0.6325, 1.475, 0.7375, 0, 0.845, 0.1075, 0.95, 0.2125, 1.055, 0.3175, 1.16, 0.4225, 1.265, 0.5275, 1.37, 0.6325, 1.475, 0.7375, 0, 0.845, 0.1075, 0.95, 0.2125, 1.055, 0.3175, 1.16, 0.4225, 1.265, 0.5275, 1.37, 0.6325, 1.475, 0.7375]</td></tr>
|
|
|
+<tr><td>SpacingBetweenSlices</td><td>2.2</td></tr>
|
|
|
+<tr><td>TotalReadoutTime</td><td>0.0243749</td></tr>
|
|
|
+<tr><td>TxRefAmp</td><td>245.513</td></tr>
|
|
|
+<tr><td>WipMemBlock</td><td>2e9762be-a321-40bd-8c3d-4046e8a60cdc||Sequence: R017 nxva30a/master r/d34922cc2+; Jun 27 2022 13:20:16 by eja</td></tr>
|
|
|
+</table>
|
|
|
+
|
|
|
+ </div>
|
|
|
+ </div>
|
|
|
+ </div>
|
|
|
+
|
|
|
+
|
|
|
+ <div class="accordion-item">
|
|
|
+ <h2 class="accordion-header" id="about-metadata-2">
|
|
|
+ <button class="accordion-button collapsed" type="button" data-bs-toggle="collapse" data-bs-target="#about-metadata-2-collapse" aria-controls="about-metadata-2-collapse">
|
|
|
+ Extracted Image quality metrics (IQMs)
|
|
|
+ </button>
|
|
|
+ </h2>
|
|
|
+ <div id="about-metadata-2-collapse" class="accordion-collapse collapse" aria-labelledby="about-metadata-2-heading" data-bs-parent="#about-metadata-2">
|
|
|
+ <div class="accordion-body metadata-table">
|
|
|
+ <table id="about-metadata-table-2" class="table table-sm table-striped">
|
|
|
+<tr><td colspan=3>aor</td><td>[0.0010126530612244897, 0.0009856122448979592, 0.0010675510204081631, 0.001210408163265306]</td></tr>
|
|
|
+<tr><td colspan=3>aqi</td><td>[0.004052359489795918, 0.005709584081632652, 0.00928379806122449, 0.015546652040816325]</td></tr>
|
|
|
+<tr><td colspan=3>dummy_trs</td><td>1</td></tr>
|
|
|
+<tr><td>dvars</td><td colspan=2>nstd</td><td>36.383040359484546</td></tr>
|
|
|
+<tr><td>dvars</td><td colspan=2>std</td><td>1.0442550218556705</td></tr>
|
|
|
+<tr><td>dvars</td><td colspan=2>vstd</td><td>1.0312613660824743</td></tr>
|
|
|
+<tr><td colspan=3>efc</td><td>0.6497</td></tr>
|
|
|
+<tr><td colspan=3>fber</td><td>132.809</td></tr>
|
|
|
+<tr><td>fd</td><td colspan=2>mean</td><td>0.10365551661641279</td></tr>
|
|
|
+<tr><td>fd</td><td colspan=2>num</td><td>9</td></tr>
|
|
|
+<tr><td>fd</td><td colspan=2>perc</td><td>9.183673469387756</td></tr>
|
|
|
+<tr><td>fwhm</td><td colspan=2>avg</td><td>3.932107833208321</td></tr>
|
|
|
+<tr><td>fwhm</td><td colspan=2>x</td><td>3.7828221721117528</td></tr>
|
|
|
+<tr><td>fwhm</td><td colspan=2>y</td><td>3.911478689149429</td></tr>
|
|
|
+<tr><td>fwhm</td><td colspan=2>z</td><td>4.102022638363781</td></tr>
|
|
|
+<tr><td colspan=3>gcor</td><td>[0.0058994, 0.00960313, 0.00869326, 0.00723928]</td></tr>
|
|
|
+<tr><td>gsr</td><td colspan=2>x</td><td>0.14704112708568573</td></tr>
|
|
|
+<tr><td>gsr</td><td colspan=2>y</td><td>0.012944568879902363</td></tr>
|
|
|
+<tr><td>size</td><td colspan=2>t</td><td>98</td></tr>
|
|
|
+<tr><td>size</td><td colspan=2>x</td><td>76</td></tr>
|
|
|
+<tr><td>size</td><td colspan=2>y</td><td>102</td></tr>
|
|
|
+<tr><td>size</td><td colspan=2>z</td><td>60</td></tr>
|
|
|
+<tr><td colspan=3>snr</td><td>2.4723984968282426</td></tr>
|
|
|
+<tr><td>spacing</td><td colspan=2>tr</td><td>1.600000023841858</td></tr>
|
|
|
+<tr><td>spacing</td><td colspan=2>x</td><td>2.196079969406128</td></tr>
|
|
|
+<tr><td>spacing</td><td colspan=2>y</td><td>2.196079969406128</td></tr>
|
|
|
+<tr><td>spacing</td><td colspan=2>z</td><td>2.200000047683716</td></tr>
|
|
|
+<tr><td>summary</td><td>bg</td><td>k</td><td>6.0653</td></tr>
|
|
|
+<tr><td>summary</td><td>bg</td><td>mad</td><td>69.6369</td></tr>
|
|
|
+<tr><td>summary</td><td>bg</td><td>mean</td><td>180.6332</td></tr>
|
|
|
+<tr><td>summary</td><td>bg</td><td>median</td><td>74.0</td></tr>
|
|
|
+<tr><td>summary</td><td>bg</td><td>n</td><td>331170.0</td></tr>
|
|
|
+<tr><td>summary</td><td>bg</td><td>p05</td><td>0.0</td></tr>
|
|
|
+<tr><td>summary</td><td>bg</td><td>p95</td><td>759.0</td></tr>
|
|
|
+<tr><td>summary</td><td>bg</td><td>stdv</td><td>254.038</td></tr>
|
|
|
+<tr><td>summary</td><td>fg</td><td>k</td><td>1.1792</td></tr>
|
|
|
+<tr><td>summary</td><td>fg</td><td>mad</td><td>329.9244</td></tr>
|
|
|
+<tr><td>summary</td><td>fg</td><td>mean</td><td>885.6814</td></tr>
|
|
|
+<tr><td>summary</td><td>fg</td><td>median</td><td>848.0</td></tr>
|
|
|
+<tr><td>summary</td><td>fg</td><td>n</td><td>133950.0</td></tr>
|
|
|
+<tr><td>summary</td><td>fg</td><td>p05</td><td>409.0</td></tr>
|
|
|
+<tr><td>summary</td><td>fg</td><td>p95</td><td>1484.0</td></tr>
|
|
|
+<tr><td>summary</td><td>fg</td><td>stdv</td><td>342.9855</td></tr>
|
|
|
+<tr><td colspan=3>tsnr</td><td>39.18636330310255</td></tr>
|
|
|
+</table>
|
|
|
+
|
|
|
+ </div>
|
|
|
+ </div>
|
|
|
+ </div>
|
|
|
+
|
|
|
+</div>
|
|
|
+ </div>
|
|
|
+ </div>
|
|
|
+
|
|
|
+<div id="qcrating-menu" class="card position-fixed d-none" style="width: 30%; top: 100px; left: 65%;">
|
|
|
+<div class="card-header m-0">
|
|
|
+ Rating widget
|
|
|
+ <button type="button" class="btn-close position-absolute top-0 end-0" aria-label="Close" id="close-qcrating-menu" onclick="toggle_rating()" style="margin: 10px 10px 0 0"></button>
|
|
|
+</div>
|
|
|
+<div class="card-body">
|
|
|
+<div class="accordion">
|
|
|
+ <div class="accordion-item">
|
|
|
+ <h2 class="accordion-header" id="qcslider-head">
|
|
|
+ <button class="accordion-button" type="button" data-bs-toggle="collapse" data-bs-target="#qcslider-collapse" aria-expanded="true" aria-controls="qcslider-collapse">Overall Quality Rating</button>
|
|
|
+ </h2>
|
|
|
+ <div id="qcslider-collapse" class="accordion-collapse collapse show" aria-labelledby="qcslider-head">
|
|
|
+ <div class="accordion-body">
|
|
|
+ <input type="range" min="1.0" max="4.0" step="0.05" value="2.5" id="qcslider" class="slider">
|
|
|
+ <ul class="list-group list-group-horizontal slider-labels" style="width: 100%">
|
|
|
+ <li class="list-group-item list-group-item-danger small" style="font-size: 0.7em; width: 25%; text-align:center">Exclude</li>
|
|
|
+ <li class="list-group-item list-group-item-warning small" style="font-size: 0.7em; width: 25%; text-align:center">Poor</li>
|
|
|
+ <li class="list-group-item list-group-item-primary small" style="font-size: 0.7em; width: 25%; text-align:center">Acceptable</li>
|
|
|
+ <li class="list-group-item list-group-item-success small" style="font-size: 0.7em; width: 25%; text-align:center">Excellent</li>
|
|
|
+ </ul>
|
|
|
+ </div>
|
|
|
+ </div>
|
|
|
+ </div>
|
|
|
+
|
|
|
+ <div class="accordion-item">
|
|
|
+ <h2 class="accordion-header" id="qcartifacts-head">
|
|
|
+ <button class="accordion-button collapsed" type="button" data-bs-toggle="collapse" data-bs-target="#qcartifacts-collapse" aria-expanded="false" aria-controls="qcartifacts-collapse">
|
|
|
+ Record specific artifacts
|
|
|
+ </button>
|
|
|
+ </h2>
|
|
|
+ <div id="qcartifacts-collapse" class="accordion-collapse collapse" aria-labelledby="qcartifacts-head">
|
|
|
+ <div class="accordion-body">
|
|
|
+ <fieldset id="qcartifacts-group" class="form-group">
|
|
|
+ <div class="form-check form-switch small">
|
|
|
+ <input class="form-check-input" type="checkbox" name="head-motion" id="qcartifacts-item-0" />
|
|
|
+ <label class="form-check-label" for="qcartifacts-item-0">Head motion artifacts</label>
|
|
|
+ </div>
|
|
|
+ <div class="form-check form-switch small">
|
|
|
+ <input class="form-check-input" type="checkbox" name="eye-spillover" id="qcartifacts-item-1" />
|
|
|
+ <label class="form-check-label" for="qcartifacts-item-1">Eye spillover through <abbr title="phase-encoding">PE</abbr> axis</label>
|
|
|
+ </div>
|
|
|
+ <div class="form-check form-switch small">
|
|
|
+ <input class="form-check-input" type="checkbox" name="noneye-spillover" id="qcartifacts-item-2" />
|
|
|
+ <label class="form-check-label" for="qcartifacts-item-2">Non-eye spillover through <abbr title="phase-encoding">PE</abbr> axis</label>
|
|
|
+ </div>
|
|
|
+ <div class="form-check form-switch small">
|
|
|
+ <input class="form-check-input" type="checkbox" name="coil-failure" id="qcartifacts-item-3" />
|
|
|
+ <label class="form-check-label" for="qcartifacts-item-3">Coil failure</label>
|
|
|
+ </div>
|
|
|
+ <div class="form-check form-switch small">
|
|
|
+ <input class="form-check-input" type="checkbox" name="noise-global" id="qcartifacts-item-4" />
|
|
|
+ <label class="form-check-label" for="qcartifacts-item-4">Global noise</label>
|
|
|
+ </div>
|
|
|
+ <div class="form-check form-switch small">
|
|
|
+ <input class="form-check-input" type="checkbox" name="noise-local" id="qcartifacts-item-5" />
|
|
|
+ <label class="form-check-label" for="qcartifacts-item-5">Local noise</label>
|
|
|
+ </div>
|
|
|
+ <div class="form-check form-switch small">
|
|
|
+ <input class="form-check-input" type="checkbox" name="em-perturbation" id="qcartifacts-item-6" />
|
|
|
+ <label class="form-check-label" for="qcartifacts-item-6"><abbr title="electromagnetic">EM</abbr> interference/perturbation</label>
|
|
|
+ </div>
|
|
|
+ <div class="form-check form-switch small">
|
|
|
+ <input class="form-check-input" type="checkbox" name="wrap-around" id="qcartifacts-item-7" />
|
|
|
+ <label class="form-check-label" for="qcartifacts-item-7">Problematic <abbr title="field-of-view">FoV</abbr> prescription / wrap-around</label>
|
|
|
+ </div>
|
|
|
+ <div class="form-check form-switch small">
|
|
|
+ <input class="form-check-input" type="checkbox" name="ghost-aliasing" id="qcartifacts-item-8" />
|
|
|
+ <label class="form-check-label" for="qcartifacts-item-8">Aliasing ghosts</label>
|
|
|
+ </div>
|
|
|
+ <div class="form-check form-switch small">
|
|
|
+ <input class="form-check-input" type="checkbox" name="ghost-other" id="qcartifacts-item-9" />
|
|
|
+ <label class="form-check-label" for="qcartifacts-item-9">Other ghosts (for example, <abbr title="radiofrequency">RF</abbr> spoiling)</label>
|
|
|
+ </div>
|
|
|
+ <div class="form-check form-switch small">
|
|
|
+ <input class="form-check-input" type="checkbox" name="inu" id="qcartifacts-item-10" />
|
|
|
+ <label class="form-check-label" for="qcartifacts-item-10">Intensity non-uniformity (B<sub>1</sub> bias)</label>
|
|
|
+ </div>
|
|
|
+ <div class="form-check form-switch small">
|
|
|
+ <input class="form-check-input" type="checkbox" name="field-variation" id="qcartifacts-item-11" />
|
|
|
+ <label class="form-check-label" for="qcartifacts-item-11">Temporal B<sub>1</sub> field non-uniformity variation</label>
|
|
|
+ </div>
|
|
|
+ <div class="form-check form-switch small">
|
|
|
+ <input class="form-check-input" type="checkbox" name="processing" id="qcartifacts-item-12" />
|
|
|
+ <label class="form-check-label" for="qcartifacts-item-12">Processing such as denoising, defacing or resamplings happened</label>
|
|
|
+ </div>
|
|
|
+ <div class="form-check form-switch small">
|
|
|
+ <input class="form-check-input" type="checkbox" name="uncategorized" id="qcartifacts-item-13" />
|
|
|
+ <label class="form-check-label" for="qcartifacts-item-13">Other uncategorized artifact(s)</label>
|
|
|
+ </div>
|
|
|
+ </fieldset>
|
|
|
+ </div> <!-- accordion-body -->
|
|
|
+ </div> <!-- accordion-collapse -->
|
|
|
+ </div> <!-- accordion-item -->
|
|
|
+ <div class="accordion-item">
|
|
|
+ <h2 class="accordion-header" id="qcextra-head">
|
|
|
+ <button class="accordion-button collapsed" type="button" data-bs-toggle="collapse" data-bs-target="#qcextra-collapse" aria-expanded="false" aria-controls="qcextra-collapse">
|
|
|
+ Extra details
|
|
|
+ </button>
|
|
|
+ </h2>
|
|
|
+ <div id="qcextra-collapse" class="accordion-collapse collapse" aria-labelledby="qcextra-head">
|
|
|
+ <div class="accordion-body">
|
|
|
+ <div class="input-group">
|
|
|
+ <span class="input-group-text">Comments</span>
|
|
|
+ <textarea class="form-control" aria-label="Comments" id="qcextra-comments"></textarea>
|
|
|
+ </div>
|
|
|
+
|
|
|
+ <p style="margin-top: 20px; font-weight: bold">Rater confidence</p>
|
|
|
+ <input type="range" min="0.0" max="4.0" step="0.05" value="3.5" id="qcextra-confidence" class="slider" style="margin-left: 22%;width: 56%;">
|
|
|
+ <ul class="list-group list-group-horizontal slider-labels" style="width: 100%">
|
|
|
+ <li class="list-group-item list-group-item-warning small" style="width: 50%; text-align:center">Doubtful</li>
|
|
|
+ <li class="list-group-item list-group-item-success bg-success text-white small" style="width: 50%; text-align:center">Confident</li>
|
|
|
+ </ul>
|
|
|
+ </div> <!-- accordion-body -->
|
|
|
+ </div> <!-- accordion-collapse -->
|
|
|
+ </div> <!-- accordion-item -->
|
|
|
+</div>
|
|
|
+<div style="margin-top: 10px">
|
|
|
+<a class="btn btn-primary disabled" id="btn-download" href="">Download</a>
|
|
|
+</div>
|
|
|
+<script type="text/javascript">
|
|
|
+var MINIMUM_RATING_TIME = 10
|
|
|
+$('#qcslider').on('input', function() {
|
|
|
+
|
|
|
+ if ( (Date.now() - timestamp) / 1000 > MINIMUM_RATING_TIME) {
|
|
|
+ $('#btn-download').removeClass('disabled');
|
|
|
+ $('#btn-download').removeAttr('aria-disabled');
|
|
|
+ $('#btn-post').removeAttr('disabled');
|
|
|
+ };
|
|
|
+
|
|
|
+ $('#qcslider-collapse .list-group-item').removeClass(function(index, classname) {
|
|
|
+ return (classname.match(/(^|\s)bg-\S+/g) || []).join(' ');
|
|
|
+ });
|
|
|
+ $('#qcslider-collapse .list-group-item').removeClass(function(index, classname) {
|
|
|
+ return (classname.match(/(^|\s)text-\S+/g) || []).join(' ');
|
|
|
+ });
|
|
|
+
|
|
|
+ if ( $(this).val() < 1.5 ) {
|
|
|
+ $('#qcslider-collapse .list-group-item-danger').addClass('bg-danger text-white');
|
|
|
+ } else if ( $(this).val() > 3.5 ) {
|
|
|
+ $('#qcslider-collapse .list-group-item-success').addClass('bg-success text-white');
|
|
|
+ } else if ( $(this).val() < 2.5 ) {
|
|
|
+ $('#qcslider-collapse .list-group-item-warning').addClass('bg-warning text-dark');
|
|
|
+ } else {
|
|
|
+ $('#qcslider-collapse .list-group-item-primary').addClass('bg-primary text-white');
|
|
|
+ };
|
|
|
+
|
|
|
+ var payload = read_form();
|
|
|
+});
|
|
|
+
|
|
|
+$('#qcextra-confidence').on('input', function() {
|
|
|
+ if ( (Date.now() - timestamp) / 1000 > MINIMUM_RATING_TIME) {
|
|
|
+ $('#btn-download').removeClass('disabled');
|
|
|
+ $('#btn-download').removeAttr('aria-disabled');
|
|
|
+ $('#btn-post').removeAttr('disabled');
|
|
|
+ };
|
|
|
+
|
|
|
+ $('#qcextra-collapse .list-group-item').removeClass(function(index, classname) {
|
|
|
+ return (classname.match(/(^|\s)bg-\S+/g) || []).join(' ');
|
|
|
+ });
|
|
|
+ $('#qcextra-collapse .list-group-item').removeClass(function(index, classname) {
|
|
|
+ return (classname.match(/(^|\s)text-\S+/g) || []).join(' ');
|
|
|
+ });
|
|
|
+
|
|
|
+ if ( $(this).val() < 2.0 ) {
|
|
|
+ $('#qcextra-collapse .list-group-item-warning').addClass('bg-warning text-dark');
|
|
|
+ } else {
|
|
|
+ $('#qcextra-collapse .list-group-item-success').addClass('bg-success text-white');
|
|
|
+ };
|
|
|
+
|
|
|
+ var payload = read_form();
|
|
|
+});
|
|
|
+
|
|
|
+
|
|
|
+$('#qcextra-comments').bind('input propertychange', function() {
|
|
|
+ if ( (Date.now() - timestamp) / 1000 > MINIMUM_RATING_TIME) {
|
|
|
+ $('#btn-download').removeClass('disabled');
|
|
|
+ $('#btn-download').removeAttr('aria-disabled');
|
|
|
+ $('#btn-post').removeAttr('disabled');
|
|
|
+ };
|
|
|
+});
|
|
|
+
|
|
|
+$( '#btn-post' ).click( function() {
|
|
|
+ var payload = read_form();
|
|
|
+ var md5sum = "unspecified";
|
|
|
+ var params = {
|
|
|
+ 'rating': payload['rating'],
|
|
|
+ 'md5sum': md5sum,
|
|
|
+ 'name': "",
|
|
|
+ 'comment': JSON.stringify(payload['artifacts'])
|
|
|
+ };
|
|
|
+
|
|
|
+ // disable development releases
|
|
|
+ var authorization = $(this).val();
|
|
|
+ var ratingReq = new XMLHttpRequest();
|
|
|
+ ratingReq.open("POST", "https://mriqc.nimh.nih.gov:443/api/v1/rating");
|
|
|
+ ratingReq.setRequestHeader("Content-Type", "application/json;charset=UTF-8");
|
|
|
+ ratingReq.setRequestHeader("Authorization", authorization);
|
|
|
+ ratingReq.onload = function () {
|
|
|
+ status = ratingReq.status;
|
|
|
+ $('#btn-post').removeClass('btn-primary');
|
|
|
+ $('#btn-post').attr('disabled', true);
|
|
|
+ $('#btn-post').attr('aria-disabled', true);
|
|
|
+ $('#btn-post').prop('disabled');
|
|
|
+ $('#btn-post').addClass('disabled');
|
|
|
+ $('#btn-post').removeClass('active');
|
|
|
+ if (status === "201") {
|
|
|
+ $('#btn-post').addClass('btn-success');
|
|
|
+ $('#btn-post').html('Posted!');
|
|
|
+ } else {
|
|
|
+ $('#btn-post').addClass('btn-danger');
|
|
|
+ $('#btn-post').html('Failed');
|
|
|
+ };
|
|
|
+ };
|
|
|
+ ratingReq.send(JSON.stringify(params));
|
|
|
+});
|
|
|
+
|
|
|
+$( 'body' ).on( 'click', '#qcartifacts-group input', function(e) {
|
|
|
+ if ( (Date.now() - timestamp) / 1000 > MINIMUM_RATING_TIME) {
|
|
|
+ $('#btn-download').removeClass('disabled');
|
|
|
+ $('#btn-download').removeAttr('aria-disabled');
|
|
|
+ $('#btn-post').removeAttr('disabled');
|
|
|
+ };
|
|
|
+
|
|
|
+ var payload = read_form();
|
|
|
+});
|
|
|
+
|
|
|
+$( 'body' ).on( 'click', '#qcrating-toggler', function(e) {
|
|
|
+ toggle_rating();
|
|
|
+});
|
|
|
+</script>
|
|
|
+</div>
|
|
|
+
|
|
|
+<script type="text/javascript">
|
|
|
+function toggle(id) {
|
|
|
+ var element = document.getElementById(id);
|
|
|
+ if(element.style.display == 'block')
|
|
|
+ element.style.display = 'none';
|
|
|
+ else
|
|
|
+ element.style.display = 'block';
|
|
|
+}
|
|
|
+</script>
|
|
|
+</body>
|
|
|
+</html>
|