>>>>> started run at 30/11/2020 12:15:37{'data_path': ['H:/Sleep/20201028_GCaMP6f_8238_awake/6'], 'subfolders': [], 'save_path0': 'H:/Sleep/20201028_GCaMP6f_8238_awake/6', 'fast_disk': 'H:/Sleep/20201028_GCaMP6f_8238_awake/6', 'input_format': 'tif'}

tif

** Found 1 tifs - converting to binary **

2000 frames of binary, time 5.49 sec.

4000 frames of binary, time 7.53 sec.

6000 frames of binary, time 9.57 sec.

8000 frames of binary, time 11.50 sec.

time 13.54 sec. Wrote 8944 tiff frames to binaries for 1 planes

>>>>>>>>>>>>>>>>>>>>> PLANE 0 <<<<<<<<<<<<<<<<<<<<<<

----------- REGISTRATION

registering 8944 frames

Reference frame, 14.69 sec.

2500/8944 frames, 75.89 sec.

5000/8944 frames, 150.02 sec.

7500/8944 frames, 222.69 sec.

8944/8944 frames, 269.97 sec.

bad frames file path: H:\Sleep\20201028_GCaMP6f_8238_awake\6\bad_frames.npy

----------- Total 285.09 sec

Registration metrics, 66.43 sec.

----------- ROI DETECTION AND EXTRACTION

Binning movie in chunks of length 21

Binned movie [425,500,488], 8.31 sec.

NOTE: estimated spatial scale ~12 pixels, time epochs 1.00, threshold 10.00 

0 ROIs, score=359.59

1000 ROIs, score=16.89

Found 1951 ROIs, 36.80 sec

After removing overlaps, 1676 ROIs remain

Masks made in 20.64 sec.

Extracted fluorescence from 1676 ROIs in 8944 frames, 97.47 sec.

NOTE: applying classifier C:\Users\axelf\.suite2p\classifiers\classifier_user.npy

----------- Total 171.67 sec.

WARNING: skipping spike detection (ops['spikedetect']=False)

Plane 0 processed in 523.69 sec (can open in GUI).

total = 238.60 sec.

TOTAL RUNTIME 238.94 sec