Browse Source

Merge branch 'upd/0.2.1' of NeuralEnsemble/BEP032-examples into master

Samuel Garcia 2 years ago
parent
commit
24966d94e8

+ 0 - 7
ephys_nix/dataset_description.json

@@ -13,13 +13,6 @@
     "Sonja Grün",
     "Alexa Riehle"
   ],
-  "InstitutionName": "Institut de Neuroscience de la Timone, Marseille, France”,
-  "InstitutionAddress": "Faculté de Médecine,  27, boulevard Jean Moulin, 13005 Marseille, France",
-  "Collaborators": [
-    "Institute of Neuroscience and Medicine (INM-6), 52425 Jülich, Germany",
-    "Institute for Advanced Simulation (IAS-6), 52425 Jülich, Germany",
-    "JARA Institute Brain Structure-Function Relationships (INM-10), 52425 Jülich, Germany"
-  ],
   "Acknowledgements": "We thank Emiliano Torre and Vahid Rostami for detecting and handling the hyper-synchronous event artifacts, and Florent Jaillet for developing the Event-Detection Toolbox in Matlab. Special thanks to Moshe Abeles who was a tough teacher for Sonja Grün and taught her the knowledge required for projects like this.",
   "HowToAcknowledge": "Brochier T, Zehl L, Hao Y, Duret M, Sprenger J, Denker M, Grün S, Riehle A (2017) Massively parallel multi-electrode recordings of macaque motor cortex during an instructed delayed reach-to-grasp task. G-Node. https://doi.org/10.12751/g-node.f83565",
   "Funding": [

+ 9 - 9
ephys_nix/participants.json

@@ -1,29 +1,29 @@
 {
-  "subjectID": {
+  "SubjectID": {
     "Description": "Short identifier for monkey (e.g., used in file names)"
   },
-  "species": {
+  "Species": {
     "Description": "binomial species name (genus, species with genus)"
   },
-  "sex": {
+  "Sex": {
     "Description": "Sex of the animal (male/female)"
   },
-  "birthdate": {
+  "Birthdate": {
     "Description": "Date of birth"
   },
-  "handedness": {
+  "Handedness": {
     "Description": "Trained hand (left and/or right)"
   },
-  "surgerydate": {
+  "SurgeryDate": {
     "Description": "Date of the surgery"
   },
-  "disabilities": {
+  "Disabilities": {
     "Description": "Comment on existing disabilities"
   },
-  "character": {
+  "Character": {
     "Description": "Comment on the general character/personality"
   },
-  "given_name": {
+  "GivenName": {
     "Description": "Given Name"
   }
 }

+ 1 - 1
ephys_nix/participants.tsv

@@ -1,3 +1,3 @@
-subjectID	species	sex	birthdate	handedness	surgerydate	disabilities	character	given_name
+subject_id	species	sex	birthdate	handedness	surgerydate	disabilities	character	given_name
 sub-i	macaca mulatta	male	2008-05-17T00:00:00	left	2014-05-22T00:00:00	n/a	calm, but overall not really motivated. Less attentive.	monkey_N
 sub-l	macaca mulatta	female	2004-03-19T00:00:00	left	2010-09-15T00:00:00	Middle phalanx of right thumb is missing.	Eager to work, quick and efficient but very nervous. Does not like to be touched (for instance for RF testing).	monkey_L

+ 193 - 193
ephys_nix/sub-i/ses-140703/ephys/sub-i_ses-140703_task-r2g_run-001_channels.tsv

@@ -1,199 +1,199 @@
-channelID	contact_id	sampling_frequency	units	channel_name	file_origin	connector_id	connector_pin_ID	nev_dig_factor	nb_sorted_units	nev_hi_freq_order	nev_hi_freq_type	nev_lo_freq_order	nev_lo_freq_type	nsx_hi_freq_order	nsx_lo_freq_order	nsx_hi_freq_type	nsx_lo_freq_type	nsx	hi_pass_freq	lo_pass_freq	hi_pass_order	lo_pass_order	filter_type	electrode_reject_LFC	electrode_reject_IFC		connector_aligned_id	coordinates_x	coordinates_y
+channel_id	contact_id	sampling_frequency	units	channel_name	file_origin	connector_id	connector_pin_id	nev_dig_factor	nb_sorted_units	nev_hi_freq_order	nev_hi_freq_type	nev_lo_freq_order	nev_lo_freq_type	nsx_hi_freq_order	nsx_lo_freq_order	nsx_hi_freq_type	nsx_lo_freq_type	nsx	hi_pass_freq	lo_pass_freq	hi_pass_order	lo_pass_order	filter_type	electrode_reject_LFC	electrode_reject_IFC		connector_aligned_id	coordinates_x	coordinates_y
 137	n/a	1000	mV	GFpr1	../../../sourcedata/i140703-001.ns2	5	9	21516	0	0	None	0	None	0	0	None	None	2	n/a	n/a	n/a	n/a	n/a	n/a	n/a	n/a	n/a	n/a	n/a
 138	n/a	1000	mV	GFside1	../../../sourcedata/i140703-001.ns2	5	10	21516	0	0	None	0	None	0	0	None	None	2	n/a	n/a	n/a	n/a	n/a	n/a	n/a	n/a	n/a	n/a	n/a
 139	n/a	1000	mV	GFpr2	../../../sourcedata/i140703-001.ns2	5	11	21516	0	0	None	0	None	0	0	None	None	2	n/a	n/a	n/a	n/a	n/a	n/a	n/a	n/a	n/a	n/a	n/a
 140	n/a	1000	mV	GFside2	../../../sourcedata/i140703-001.ns2	5	12	21516	0	0	None	0	None	0	0	None	None	2	n/a	n/a	n/a	n/a	n/a	n/a	n/a	n/a	n/a	n/a	n/a
 141	n/a	1000	mV	LF	../../../sourcedata/i140703-001.ns2	5	13	21516	0	0	None	0	None	0	0	None	None	2	n/a	n/a	n/a	n/a	n/a	n/a	n/a	n/a	n/a	n/a	n/a
 143	n/a	1000	mV	Displ	../../../sourcedata/i140703-001.ns2	5	15	21516	0	0	None	0	None	0	0	None	None	2	n/a	n/a	n/a	n/a	n/a	n/a	n/a	n/a	n/a	n/a	n/a
-1	1	1000	uV	chan1 	../../../sourcedata/i140703-001.ns2 	1	1	250	2	2	Butterworth 	2	Butterworth 	1	4	Butterworth 	Butterworth 	2	0.3	250	1	4	Butterworth 	FALSE	FALSE	FALSE	93	0.8	3.6
-2	2	1000	uV	chan2 	../../../sourcedata/i140703-001.ns2 	1	2	250	1	2	Butterworth 	2	Butterworth 	1	4	Butterworth 	Butterworth 	2	0.3	250	1	4	Butterworth 	FALSE	FALSE	FALSE	92	0.4	3.6
-3	3	1000	uV	chan3 	../../../sourcedata/i140703-001.ns2 	1	3	250	1	2	Butterworth 	2	Butterworth 	1	4	Butterworth 	Butterworth 	2	0.3	250	1	4	Butterworth 	FALSE	FALSE	FALSE	94	1.2	3.6
-4	4	1000	uV	chan4 	../../../sourcedata/i140703-001.ns2 	1	4	250	2	2	Butterworth 	2	Butterworth 	1	4	Butterworth 	Butterworth 	2	0.3	250	1	4	Butterworth 	FALSE	FALSE	FALSE	95	1.6	3.6
-5	5	1000	uV	chan5 	../../../sourcedata/i140703-001.ns2 	1	5	250	1	2	Butterworth 	2	Butterworth 	1	4	Butterworth 	Butterworth 	2	0.3	250	1	4	Butterworth 	FALSE	FALSE	FALSE	75	1.6	2.8
-6	6	1000	uV	chan6 	../../../sourcedata/i140703-001.ns2 	1	6	250	1	2	Butterworth 	2	Butterworth 	1	4	Butterworth 	Butterworth 	2	0.3	250	1	4	Butterworth 	FALSE	FALSE	FALSE	96	2	3.6
-7	7	1000	uV	chan7 	../../../sourcedata/i140703-001.ns2 	1	7	250	1	2	Butterworth 	2	Butterworth 	1	4	Butterworth 	Butterworth 	2	0.3	250	1	4	Butterworth 	FALSE	FALSE	FALSE	85	1.6	3.2
-8	8	1000	uV	chan8 	../../../sourcedata/i140703-001.ns2 	1	8	250	2	2	Butterworth 	2	Butterworth 	1	4	Butterworth 	Butterworth 	2	0.3	250	1	4	Butterworth 	FALSE	FALSE	FALSE	97	2.4	3.6
-9	9	1000	uV	chan9 	../../../sourcedata/i140703-001.ns2 	1	9	250	2	2	Butterworth 	2	Butterworth 	1	4	Butterworth 	Butterworth 	2	0.3	250	1	4	Butterworth 	FALSE	FALSE	FALSE	86	2	3.2
-10	10	1000	uV	chan10 	../../../sourcedata/i140703-001.ns2 	1	10	250	2	2	Butterworth 	2	Butterworth 	1	4	Butterworth 	Butterworth 	2	0.3	250	1	4	Butterworth 	FALSE	FALSE	FALSE	98	2.8	3.6
-11	11	1000	uV	chan11 	../../../sourcedata/i140703-001.ns2 	1	11	250	2	2	Butterworth 	2	Butterworth 	1	4	Butterworth 	Butterworth 	2	0.3	250	1	4	Butterworth 	FALSE	FALSE	FALSE	87	2.4	3.2
-12	12	1000	uV	chan12 	../../../sourcedata/i140703-001.ns2 	1	12	250	1	2	Butterworth 	2	Butterworth 	1	4	Butterworth 	Butterworth 	2	0.3	250	1	4	Butterworth 	FALSE	FALSE	FALSE	88	2.8	3.2
-13	13	1000	uV	chan13 	../../../sourcedata/i140703-001.ns2 	1	13	250	2	2	Butterworth 	2	Butterworth 	1	4	Butterworth 	Butterworth 	2	0.3	250	1	4	Butterworth 	FALSE	FALSE	FALSE	77	2.4	2.8
-14	14	1000	uV	chan14 	../../../sourcedata/i140703-001.ns2 	1	14	250	2	2	Butterworth 	2	Butterworth 	1	4	Butterworth 	Butterworth 	2	0.3	250	1	4	Butterworth 	FALSE	FALSE	FALSE	99	3.2	3.6
-15	15	1000	uV	chan15 	../../../sourcedata/i140703-001.ns2 	1	15	250	1	2	Butterworth 	2	Butterworth 	1	4	Butterworth 	Butterworth 	2	0.3	250	1	4	Butterworth 	FALSE	TRUE	FALSE	66	2	2.4
-16	16	1000	uV	chan16 	../../../sourcedata/i140703-001.ns2 	1	16	250	2	2	Butterworth 	2	Butterworth 	1	4	Butterworth 	Butterworth 	2	0.3	250	1	4	Butterworth 	FALSE	FALSE	FALSE	89	3.2	3.2
-17	17	1000	uV	chan17 	../../../sourcedata/i140703-001.ns2 	1	17	250	1	2	Butterworth 	2	Butterworth 	1	4	Butterworth 	Butterworth 	2	0.3	250	1	4	Butterworth 	FALSE	FALSE	FALSE	76	2	2.8
-18	18	1000	uV	chan18 	../../../sourcedata/i140703-001.ns2 	1	18	250	3	2	Butterworth 	2	Butterworth 	1	4	Butterworth 	Butterworth 	2	0.3	250	1	4	Butterworth 	FALSE	FALSE	FALSE	90	3.6	3.2
-19	19	1000	uV	chan19 	../../../sourcedata/i140703-001.ns2 	1	19	250	1	2	Butterworth 	2	Butterworth 	1	4	Butterworth 	Butterworth 	2	0.3	250	1	4	Butterworth 	FALSE	FALSE	FALSE	67	2.4	2.4
-20	20	1000	uV	chan20 	../../../sourcedata/i140703-001.ns2 	1	20	250	1	2	Butterworth 	2	Butterworth 	1	4	Butterworth 	Butterworth 	2	0.3	250	1	4	Butterworth 	FALSE	FALSE	FALSE	79	3.2	2.8
-21	21	1000	uV	chan21 	../../../sourcedata/i140703-001.ns2 	1	21	250	1	2	Butterworth 	2	Butterworth 	1	4	Butterworth 	Butterworth 	2	0.3	250	1	4	Butterworth 	FALSE	FALSE	FALSE	58	2.8	2
-22	22	1000	uV	chan22 	../../../sourcedata/i140703-001.ns2 	1	22	250	3	2	Butterworth 	2	Butterworth 	1	4	Butterworth 	Butterworth 	2	0.3	250	1	4	Butterworth 	FALSE	FALSE	FALSE	80	3.6	2.8
-23	23	1000	uV	chan23 	../../../sourcedata/i140703-001.ns2 	1	23	250	2	2	Butterworth 	2	Butterworth 	1	4	Butterworth 	Butterworth 	2	0.3	250	1	4	Butterworth 	FALSE	TRUE	TRUE	78	2.8	2.8
-24	24	1000	uV	chan24 	../../../sourcedata/i140703-001.ns2 	1	24	250	2	2	Butterworth 	2	Butterworth 	1	4	Butterworth 	Butterworth 	2	0.3	250	1	4	Butterworth 	FALSE	FALSE	FALSE	70	3.6	2.4
-25	25	1000	uV	chan25 	../../../sourcedata/i140703-001.ns2 	1	25	250	2	2	Butterworth 	2	Butterworth 	1	4	Butterworth 	Butterworth 	2	0.3	250	1	4	Butterworth 	FALSE	FALSE	FALSE	68	2.8	2.4
-26	26	1000	uV	chan26 	../../../sourcedata/i140703-001.ns2 	1	26	250	3	2	Butterworth 	2	Butterworth 	1	4	Butterworth 	Butterworth 	2	0.3	250	1	4	Butterworth 	FALSE	FALSE	FALSE	60	3.6	2
-27	27	1000	uV	chan27 	../../../sourcedata/i140703-001.ns2 	1	27	250	2	2	Butterworth 	2	Butterworth 	1	4	Butterworth 	Butterworth 	2	0.3	250	1	4	Butterworth 	FALSE	FALSE	FALSE	69	3.2	2.4
-28	28	1000	uV	chan28 	../../../sourcedata/i140703-001.ns2 	1	28	250	1	2	Butterworth 	2	Butterworth 	1	4	Butterworth 	Butterworth 	2	0.3	250	1	4	Butterworth 	FALSE	FALSE	FALSE	50	3.6	1.6
-29	29	1000	uV	chan29 	../../../sourcedata/i140703-001.ns2 	1	29	250	3	2	Butterworth 	2	Butterworth 	1	4	Butterworth 	Butterworth 	2	0.3	250	1	4	Butterworth 	FALSE	FALSE	FALSE	59	3.2	2
-30	30	1000	uV	chan30 	../../../sourcedata/i140703-001.ns2 	1	30	250	2	2	Butterworth 	2	Butterworth 	1	4	Butterworth 	Butterworth 	2	0.3	250	1	4	Butterworth 	FALSE	FALSE	FALSE	40	3.6	1.2
-31	31	1000	uV	chan31 	../../../sourcedata/i140703-001.ns2 	1	31	250	1	2	Butterworth 	2	Butterworth 	1	4	Butterworth 	Butterworth 	2	0.3	250	1	4	Butterworth 	FALSE	FALSE	FALSE	49	3.2	1.6
-32	32	1000	uV	chan32 	../../../sourcedata/i140703-001.ns2 	1	32	250	2	2	Butterworth 	2	Butterworth 	1	4	Butterworth 	Butterworth 	2	0.3	250	1	4	Butterworth 	FALSE	FALSE	FALSE	30	3.6	0.8
-33	33	1000	uV	chan33 	../../../sourcedata/i140703-001.ns2 	2	1	250	3	2	Butterworth 	2	Butterworth 	1	4	Butterworth 	Butterworth 	2	0.3	250	1	4	Butterworth 	FALSE	FALSE	FALSE	83	0.8	3.2
-34	34	1000	uV	chan34 	../../../sourcedata/i140703-001.ns2 	2	2	250	1	2	Butterworth 	2	Butterworth 	1	4	Butterworth 	Butterworth 	2	0.3	250	1	4	Butterworth 	FALSE	FALSE	FALSE	84	1.2	3.2
-35	35	1000	uV	chan35 	../../../sourcedata/i140703-001.ns2 	2	3	250	2	2	Butterworth 	2	Butterworth 	1	4	Butterworth 	Butterworth 	2	0.3	250	1	4	Butterworth 	FALSE	FALSE	FALSE	73	0.8	2.8
-36	36	1000	uV	chan36 	../../../sourcedata/i140703-001.ns2 	2	4	250	1	2	Butterworth 	2	Butterworth 	1	4	Butterworth 	Butterworth 	2	0.3	250	1	4	Butterworth 	FALSE	FALSE	FALSE	74	1.2	2.8
-37	37	1000	uV	chan37 	../../../sourcedata/i140703-001.ns2 	2	5	250	1	2	Butterworth 	2	Butterworth 	1	4	Butterworth 	Butterworth 	2	0.3	250	1	4	Butterworth 	FALSE	FALSE	FALSE	63	0.8	2.4
-38	38	1000	uV	chan38 	../../../sourcedata/i140703-001.ns2 	2	6	250	1	2	Butterworth 	2	Butterworth 	1	4	Butterworth 	Butterworth 	2	0.3	250	1	4	Butterworth 	FALSE	TRUE	FALSE	64	1.2	2.4
-39	39	1000	uV	chan39 	../../../sourcedata/i140703-001.ns2 	2	7	250	2	2	Butterworth 	2	Butterworth 	1	4	Butterworth 	Butterworth 	2	0.3	250	1	4	Butterworth 	FALSE	FALSE	FALSE	53	0.8	2
-40	40	1000	uV	chan40 	../../../sourcedata/i140703-001.ns2 	2	8	250	2	2	Butterworth 	2	Butterworth 	1	4	Butterworth 	Butterworth 	2	0.3	250	1	4	Butterworth 	FALSE	FALSE	FALSE	54	1.2	2
-41	41	1000	uV	chan41 	../../../sourcedata/i140703-001.ns2 	2	9	250	1	2	Butterworth 	2	Butterworth 	1	4	Butterworth 	Butterworth 	2	0.3	250	1	4	Butterworth 	FALSE	FALSE	FALSE	43	0.8	1.6
-42	42	1000	uV	chan42 	../../../sourcedata/i140703-001.ns2 	2	10	250	3	2	Butterworth 	2	Butterworth 	1	4	Butterworth 	Butterworth 	2	0.3	250	1	4	Butterworth 	FALSE	FALSE	FALSE	55	1.6	2
-43	43	1000	uV	chan43 	../../../sourcedata/i140703-001.ns2 	2	11	250	2	2	Butterworth 	2	Butterworth 	1	4	Butterworth 	Butterworth 	2	0.3	250	1	4	Butterworth 	FALSE	FALSE	FALSE	44	1.2	1.6
-44	44	1000	uV	chan44 	../../../sourcedata/i140703-001.ns2 	2	12	250	2	2	Butterworth 	2	Butterworth 	1	4	Butterworth 	Butterworth 	2	0.3	250	1	4	Butterworth 	FALSE	FALSE	FALSE	45	1.6	1.6
-45	45	1000	uV	chan45 	../../../sourcedata/i140703-001.ns2 	2	13	250	1	2	Butterworth 	2	Butterworth 	1	4	Butterworth 	Butterworth 	2	0.3	250	1	4	Butterworth 	FALSE	TRUE	TRUE	33	0.8	1.2
-46	46	1000	uV	chan46 	../../../sourcedata/i140703-001.ns2 	2	14	250	3	2	Butterworth 	2	Butterworth 	1	4	Butterworth 	Butterworth 	2	0.3	250	1	4	Butterworth 	FALSE	TRUE	FALSE	46	2	1.6
-47	47	1000	uV	chan47 	../../../sourcedata/i140703-001.ns2 	2	15	250	2	2	Butterworth 	2	Butterworth 	1	4	Butterworth 	Butterworth 	2	0.3	250	1	4	Butterworth 	FALSE	FALSE	FALSE	34	1.2	1.2
-48	48	1000	uV	chan48 	../../../sourcedata/i140703-001.ns2 	2	16	250	2	2	Butterworth 	2	Butterworth 	1	4	Butterworth 	Butterworth 	2	0.3	250	1	4	Butterworth 	FALSE	FALSE	FALSE	65	1.6	2.4
-49	49	1000	uV	chan49 	../../../sourcedata/i140703-001.ns2 	2	17	250	1	2	Butterworth 	2	Butterworth 	1	4	Butterworth 	Butterworth 	2	0.3	250	1	4	Butterworth 	FALSE	FALSE	FALSE	24	1.2	0.8
-50	50	1000	uV	chan50 	../../../sourcedata/i140703-001.ns2 	2	18	250	2	2	Butterworth 	2	Butterworth 	1	4	Butterworth 	Butterworth 	2	0.3	250	1	4	Butterworth 	FALSE	FALSE	FALSE	56	2	2
-51	51	1000	uV	chan51 	../../../sourcedata/i140703-001.ns2 	2	19	250	2	2	Butterworth 	2	Butterworth 	1	4	Butterworth 	Butterworth 	2	0.3	250	1	4	Butterworth 	FALSE	FALSE	FALSE	35	1.6	1.2
-52	52	1000	uV	chan52 	../../../sourcedata/i140703-001.ns2 	2	20	250	3	2	Butterworth 	2	Butterworth 	1	4	Butterworth 	Butterworth 	2	0.3	250	1	4	Butterworth 	FALSE	FALSE	FALSE	47	2.4	1.6
-53	53	1000	uV	chan53 	../../../sourcedata/i140703-001.ns2 	2	21	250	2	2	Butterworth 	2	Butterworth 	1	4	Butterworth 	Butterworth 	2	0.3	250	1	4	Butterworth 	FALSE	TRUE	FALSE	25	1.6	0.8
-54	54	1000	uV	chan54 	../../../sourcedata/i140703-001.ns2 	2	22	250	1	2	Butterworth 	2	Butterworth 	1	4	Butterworth 	Butterworth 	2	0.3	250	1	4	Butterworth 	FALSE	FALSE	FALSE	57	2.4	2
-55	55	1000	uV	chan55 	../../../sourcedata/i140703-001.ns2 	2	23	250	2	2	Butterworth 	2	Butterworth 	1	4	Butterworth 	Butterworth 	2	0.3	250	1	4	Butterworth 	FALSE	FALSE	FALSE	26	2	0.8
-56	56	1000	uV	chan56 	../../../sourcedata/i140703-001.ns2 	2	24	250	2	2	Butterworth 	2	Butterworth 	1	4	Butterworth 	Butterworth 	2	0.3	250	1	4	Butterworth 	FALSE	FALSE	FALSE	36	2	1.2
-57	57	1000	uV	chan57 	../../../sourcedata/i140703-001.ns2 	2	25	250	1	2	Butterworth 	2	Butterworth 	1	4	Butterworth 	Butterworth 	2	0.3	250	1	4	Butterworth 	FALSE	FALSE	FALSE	27	2.4	0.8
-58	58	1000	uV	chan58 	../../../sourcedata/i140703-001.ns2 	2	26	250	2	2	Butterworth 	2	Butterworth 	1	4	Butterworth 	Butterworth 	2	0.3	250	1	4	Butterworth 	FALSE	FALSE	FALSE	37	2.4	1.2
-59	59	1000	uV	chan59 	../../../sourcedata/i140703-001.ns2 	2	27	250	2	2	Butterworth 	2	Butterworth 	1	4	Butterworth 	Butterworth 	2	0.3	250	1	4	Butterworth 	FALSE	FALSE	FALSE	28	2.8	0.8
-60	60	1000	uV	chan60 	../../../sourcedata/i140703-001.ns2 	2	28	250	2	2	Butterworth 	2	Butterworth 	1	4	Butterworth 	Butterworth 	2	0.3	250	1	4	Butterworth 	FALSE	FALSE	FALSE	38	2.8	1.2
-61	61	1000	uV	chan61 	../../../sourcedata/i140703-001.ns2 	2	29	250	3	2	Butterworth 	2	Butterworth 	1	4	Butterworth 	Butterworth 	2	0.3	250	1	4	Butterworth 	FALSE	FALSE	FALSE	29	3.2	0.8
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-82	82	1000	uV	chan82 	../../../sourcedata/i140703-001.ns2 	3	18	250	1	2	Butterworth 	2	Butterworth 	1	4	Butterworth 	Butterworth 	2	0.3	250	1	4	Butterworth 	FALSE	FALSE	FALSE	23	0.8	0.8
-83	83	1000	uV	chan83 	../../../sourcedata/i140703-001.ns2 	3	19	250	2	2	Butterworth 	2	Butterworth 	1	4	Butterworth 	Butterworth 	2	0.3	250	1	4	Butterworth 	FALSE	FALSE	FALSE	3	0.8	0
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-85	85	1000	uV	chan85 	../../../sourcedata/i140703-001.ns2 	3	21	250	3	2	Butterworth 	2	Butterworth 	1	4	Butterworth 	Butterworth 	2	0.3	250	1	4	Butterworth 	FALSE	FALSE	FALSE	4	1.2	0
-86	86	1000	uV	chan86 	../../../sourcedata/i140703-001.ns2 	3	22	250	2	2	Butterworth 	2	Butterworth 	1	4	Butterworth 	Butterworth 	2	0.3	250	1	4	Butterworth 	FALSE	FALSE	FALSE	14	1.2	0.4
-87	87	1000	uV	chan87 	../../../sourcedata/i140703-001.ns2 	3	23	250	1	2	Butterworth 	2	Butterworth 	1	4	Butterworth 	Butterworth 	2	0.3	250	1	4	Butterworth 	FALSE	FALSE	FALSE	15	1.6	0.4
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-89	89	1000	uV	chan89 	../../../sourcedata/i140703-001.ns2 	3	25	250	1	2	Butterworth 	2	Butterworth 	1	4	Butterworth 	Butterworth 	2	0.3	250	1	4	Butterworth 	FALSE	FALSE	FALSE	16	2	0.4
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-92	92	1000	uV	chan92 	../../../sourcedata/i140703-001.ns2 	3	28	250	3	2	Butterworth 	2	Butterworth 	1	4	Butterworth 	Butterworth 	2	0.3	250	1	4	Butterworth 	FALSE	FALSE	FALSE	7	2.4	0
-93	93	1000	uV	chan93 	../../../sourcedata/i140703-001.ns2 	3	29	250	2	2	Butterworth 	2	Butterworth 	1	4	Butterworth 	Butterworth 	2	0.3	250	1	4	Butterworth 	FALSE	FALSE	FALSE	8	2.8	0
-94	94	1000	uV	chan94 	../../../sourcedata/i140703-001.ns2 	3	30	250	1	2	Butterworth 	2	Butterworth 	1	4	Butterworth 	Butterworth 	2	0.3	250	1	4	Butterworth 	FALSE	FALSE	FALSE	18	2.8	0.4
-95	95	1000	uV	chan95 	../../../sourcedata/i140703-001.ns2 	3	31	250	2	2	Butterworth 	2	Butterworth 	1	4	Butterworth 	Butterworth 	2	0.3	250	1	4	Butterworth 	FALSE	FALSE	FALSE	20	3.6	0.4
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-16	16	30000	uV	chan16 	../../../sourcedata/i140703-001.ns6 	1	16	250	2	2	Butterworth 	2	Butterworth 	1	4	Butterworth 	Butterworth 	6	0.3	7500	1	3	Butterworth 	FALSE	FALSE	FALSE	89	3.2	3.2
-17	17	30000	uV	chan17 	../../../sourcedata/i140703-001.ns6 	1	17	250	1	2	Butterworth 	2	Butterworth 	1	4	Butterworth 	Butterworth 	6	0.3	7500	1	3	Butterworth 	FALSE	FALSE	FALSE	76	2	2.8
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-20	20	30000	uV	chan20 	../../../sourcedata/i140703-001.ns6 	1	20	250	1	2	Butterworth 	2	Butterworth 	1	4	Butterworth 	Butterworth 	6	0.3	7500	1	3	Butterworth 	FALSE	FALSE	FALSE	79	3.2	2.8
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-25	25	30000	uV	chan25 	../../../sourcedata/i140703-001.ns6 	1	25	250	2	2	Butterworth 	2	Butterworth 	1	4	Butterworth 	Butterworth 	6	0.3	7500	1	3	Butterworth 	FALSE	FALSE	FALSE	68	2.8	2.4
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-33	33	30000	uV	chan33 	../../../sourcedata/i140703-001.ns6 	2	1	250	3	2	Butterworth 	2	Butterworth 	1	4	Butterworth 	Butterworth 	6	0.3	7500	1	3	Butterworth 	FALSE	FALSE	FALSE	83	0.8	3.2
-34	34	30000	uV	chan34 	../../../sourcedata/i140703-001.ns6 	2	2	250	1	2	Butterworth 	2	Butterworth 	1	4	Butterworth 	Butterworth 	6	0.3	7500	1	3	Butterworth 	FALSE	FALSE	FALSE	84	1.2	3.2
-35	35	30000	uV	chan35 	../../../sourcedata/i140703-001.ns6 	2	3	250	2	2	Butterworth 	2	Butterworth 	1	4	Butterworth 	Butterworth 	6	0.3	7500	1	3	Butterworth 	FALSE	FALSE	FALSE	73	0.8	2.8
-36	36	30000	uV	chan36 	../../../sourcedata/i140703-001.ns6 	2	4	250	1	2	Butterworth 	2	Butterworth 	1	4	Butterworth 	Butterworth 	6	0.3	7500	1	3	Butterworth 	FALSE	FALSE	FALSE	74	1.2	2.8
-37	37	30000	uV	chan37 	../../../sourcedata/i140703-001.ns6 	2	5	250	1	2	Butterworth 	2	Butterworth 	1	4	Butterworth 	Butterworth 	6	0.3	7500	1	3	Butterworth 	FALSE	FALSE	FALSE	63	0.8	2.4
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+ 1 - 1
ephys_nix/sub-i/ses-140703/ephys/sub-i_ses-140703_task-r2g_run-001_contacts.tsv

@@ -1,4 +1,4 @@
-contactID	probeID	connector_aligned_id	hemisphere	x	y	z	impedance	impedance_unit	location	material	insulation
+contact_id	probe_id	connector_aligned_id	hemisphere	x	y	z	impedance	impedance_unit	location	material	insulation
 1	Prob-8596-001139	93	right	3.6	0.8	1.5	73	kOhm	M1	iridium oxide	Parylene-c
 2	Prob-8596-001139	92	right	3.6	0.4	1.5	92	kOhm	M1	iridium oxide	Parylene-c
 3	Prob-8596-001139	94	right	3.6	1.2	1.5	68	kOhm	M1	iridium oxide	Parylene-c

+ 37 - 30
ephys_nix/sub-i/ses-140703/ephys/sub-i_ses-140703_task-r2g_run-001_ephys.json

@@ -1,92 +1,99 @@
 {
-  "channelID": {
+  "InstitutionName": "Institut de Neuroscience de la Timone, Marseille, France”,
+  "InstitutionAddress": "Faculté de Médecine,  27, boulevard Jean Moulin, 13005 Marseille, France",
+  "Collaborators": [
+    "Institute of Neuroscience and Medicine (INM-6), 52425 Jülich, Germany",
+    "Institute for Advanced Simulation (IAS-6), 52425 Jülich, Germany",
+    "JARA Institute Brain Structure-Function Relationships (INM-10), 52425 Jülich, Germany"
+  ],
+  "ChannelId": {
     "Description": "Unique identifier of the channel"
   },
-  "contact_id": {
+  "ContactId": {
     "Description": "Unique identifier of the contact"
   },
-  "sampling_frequency": {
+  "SamplingFrequency": {
     "Description": "Sampling frequency of the recording signal"
   },
-  "units": {
+  "Units": {
     "Description": "Units of the recording signal"
   },
-  "channel_name": {
+  "ChannelName": {
     "Description": "Custom name of the recording channel"
   },
-  "file_origin": {
+  "FileOrigin": {
     "Description": "Source file of the signal"
   },
-  "connector_id": {
+  "ConnectorId": {
     "Description": "Id of the connector used for recording the signal"
   },
-  "connector_pin_ID": {
+  "ConnectorPinId": {
     "Description": "Pin used for recording the signal"
   },
-  "nev_dig_factor": {
+  "NevDigFactor": {
     "Description": "Digitization factor of the nev file"
   },
-  "nb_sorted_units": {
+  "NbSortedUnits": {
     "Description": "Number of sorted units on this channel"
   },
-  "nev_hi_freq_order": {
+  "NevHiFreqOrder": {
     "Description": "High pass order of the frequency filter"
   },
-  "nev_hi_freq_type": {
+  "NevHiFreqType": {
     "Description": "Type of the high pass frequency filter"
   },
-  "nev_lo_freq_order": {
+  "NevLoFreqOrder": {
     "Description": "Low pass order of the frequency filter"
   },
-  "nev_lo_freq_type": {
+  "NevLoFreqType": {
     "Description": "Type of the high pass frequency filter"
   },
-  "nsx_hi_freq_order": {
+  "NsxHiFreqOrder": {
     "Description": "Order of the high pass frequency filter"
   },
-  "nsx_lo_freq_order": {
+  "NsxLoFreqOrder": {
     "Description": "Order of the low pass frequency filter"
   },
-  "nsx_hi_freq_type": {
+  "NsxHiFreqType": {
     "Description": "Type of the high pass frequency filter"
   },
-  "nsx_lo_freq_type": {
+  "NsxLoFreqType": {
     "Description": "Type of the low pass frequency filter"
   },
-  "nsx": {
+  "Nsx": {
     "Description": "NsX value used for storing of the signal"
   },
-  "hi_pass_freq": {
+  "HiPassFreq": {
     "Description": "Cutoff frequency of the high pass filter"
   },
-  "lo_pass_freq": {
+  "LoPassFreq": {
     "Description": "Cutoff frequency of the low pass filter"
   },
-  "hi_pass_order": {
+  "HiPassOrder": {
     "Description": "Order of the high pass filter"
   },
-  "lo_pass_order": {
+  "LoPassOrder": {
     "Description": "Order of the low pass filter"
   },
-  "filter_type": {
+  "FilterType": {
     "Description": "Type of filter used"
   },
-  "electrode_reject_LFC": {
+  "ElectrodeRejectLfc": {
     "Description": "Rejection of the signal in low frequency components (TRUE/FALSE)"
   },
-  "electrode_reject_IFC": {
+  "ElectrodeRejectIfc": {
     "Description": "Rejection of the signal in intermediate frequency components (TRUE/FALSE)"
   },
-  "electrode_reject_HFC": {
+  "ElectrodeRejectHfc": {
     "Description": "Rejection of the signal in high frequency components (TRUE/FALSE)"
   },
-  "connector_aligned_id": {
+  "ConnectorAlignedId": {
     "Description": "channelID in a spatially organized grid"
   },
-  "coordinates_x": {
+  "CoordinatesX": {
     "Description": "X-coordinate of the channel"
   },
-  "coordinates_y": {
+  "CoordinatesY": {
     "Description": "Y-coordinate of the channel"
   }
 }

+ 1 - 1
ephys_nix/sub-i/ses-140703/ephys/sub-i_ses-140703_task-r2g_run-001_probes.tsv

@@ -1,2 +1,2 @@
-probeID	type	location	placement_picture	hemisphere	manufacturer	device_serial_number	contact_count	depth	width	height	dimension_units	wires_material	wires_diameter	wires_length	wires_units	owner
+probe_id	type	location	placement_picture	hemisphere	manufacturer	device_serial_number	contact_count	depth	width	height	dimension_units	wires_material	wires_diameter	wires_length	wires_units	owner
 Prob-8596-001139	utah array	M1	https://www.nature.com/articles/sdata201855/figures/1	right	Blackrock Microsystems	8596-001139	100	1.5	4	4	mm	Pt/Au	0.000025	0.04	m	RIKEN-BSI, Japan

+ 7 - 7
ephys_nix/sub-i/sub-i_sessions.json

@@ -1,23 +1,23 @@
 {
-  "sessionID": {
+  "SessionId": {
     "Description": "Unique identifier of the session"
   },
-  "session_quality": {
+  "SessionQuality": {
     "Description": "General quality of the session (excellent/good/ok/bad)"
   },
-  "data_quality": {
+  "DataQuality": {
     "Description": "Quality of the recorded data (excellent/good/ok/bad)"
   },
-  "#_trials": {
+  "#Trials": {
     "Description": "Number of trial within the session"
   },
-  "comment": {
+  "Comment": {
     "Description": "Comment by the experimenter"
   },
-  "weekday": {
+  "Weekday": {
     "Description": "Day of the week the recording was performed (monday,tuesday,...)"
   },
-  "noisy": {
+  "Noisy": {
     "Description": "Was noise observed in the data during the recording (yes/no)"
   }
 }

+ 1 - 1
ephys_nix/sub-i/sub-i_sessions.tsv

@@ -1,2 +1,2 @@
-sessionID	session_quality	data_quality	#_trials	comment	weekday	noisy
+session_id	session_quality	data_quality	#_trials	comment	weekday	noisy
 140703	excellent	good	161	n/a	thursday	yes

+ 1 - 1
ephys_nix/sub-l/ses-101210/ephys/sub-l_ses-101210_task-r2g_run-001_channels.tsv

@@ -1,4 +1,4 @@
-channelID	contact_id	sampling_frequency	units	channel_names	file_origin	connectorID	connector_pin_ID	nev_dig_factor	nb_sorted_units	nsx	hi_pass_freq	lo_pass_freq	hi_pass_order	lo_pass_order	filter_type	electrode_reject_HFC	electrode_reject_LFC	electrode_reject_IFC	connector_aligned_ids	coordinates_x	coordinates_y
+channel_id	contact_id	sampling_frequency	units	channel_names	file_origin	connector_id	connector_pin_id	nev_dig_factor	nb_sorted_units	nsx	hi_pass_freq	lo_pass_freq	hi_pass_order	lo_pass_order	filter_type	electrode_reject_HFC	electrode_reject_LFC	electrode_reject_IFC	connector_aligned_ids	coordinates_x	coordinates_y
 137	n/a	1000	uV	ainp9	../../../sourcedata/l101210-001.ns2	5	9	21516	0	2	n/a	n/a	n/a	n/a	n/a	n/a	n/a	n/a	n/a	n/a	n/a
 138	n/a	1000	uV	ainp10	../../../sourcedata/l101210-001.ns2	5	10	21516	0	2	n/a	n/a	n/a	n/a	n/a	n/a	n/a	n/a	n/a	n/a	n/a
 139	n/a	1000	uV	ainp11	../../../sourcedata/l101210-001.ns2	5	11	21516	0	2	n/a	n/a	n/a	n/a	n/a	n/a	n/a	n/a	n/a	n/a	n/a

+ 1 - 1
ephys_nix/sub-l/ses-101210/ephys/sub-l_ses-101210_task-r2g_run-001_contacts.tsv

@@ -1,4 +1,4 @@
-contactID	probeID	connector_aligned_id	hemisphere	x	y	z	impedance	impedance_unit	location	material	insulation
+contact_id	probe_id	connector_aligned_id	hemisphere	x	y	z	impedance	impedance_unit	location	material	insulation
 1	Prob-1025-0503	91	right	3.6	0.0	1.5	52	kOhm	M1	iridium oxide	Parylene-c
 2	Prob-1025-0503	92	right	3.6	0.4	1.5	44	kOhm	M1	iridium oxide	Parylene-c
 3	Prob-1025-0503	94	right	3.6	1.2	1.5	50	kOhm	M1	iridium oxide	Parylene-c

+ 38 - 31
ephys_nix/sub-l/ses-101210/ephys/sub-l_ses-101210_task-r2g_run-001_ephys.json

@@ -1,92 +1,99 @@
 {
-  "channelID": {
+  "InstitutionName": "Institut de Neuroscience de la Timone, Marseille, France”,
+  "InstitutionAddress": "Faculté de Médecine,  27, boulevard Jean Moulin, 13005 Marseille, France",
+  "Collaborators": [
+    "Institute of Neuroscience and Medicine (INM-6), 52425 Jülich, Germany",
+    "Institute for Advanced Simulation (IAS-6), 52425 Jülich, Germany",
+    "JARA Institute Brain Structure-Function Relationships (INM-10), 52425 Jülich, Germany"
+  ],
+  "ChannelId": {
     "Description": "Unique identifier of the channel"
   },
-  "contact_id": {
+  "ContactId": {
     "Description": "Unique identifier of the contact"
   },
-  "sampling_frequency": {
+  "SamplingSrequency": {
     "Description": "Sampling frequency of the recording signal"
   },
-  "units": {
+  "Units": {
     "Description": "Units of the recording signal"
   },
-  "channel_name": {
+  "ChannelName": {
     "Description": "Custom name of the recording channel"
   },
-  "file_origin": {
+  "FileOrigin": {
     "Description": "Source file of the signal"
   },
-  "connector_id": {
+  "ConnectorId": {
     "Description": "Id of the connector used for recording the signal"
   },
-  "connector_pin_ID": {
+  "ConnectorPinId": {
     "Description": "Pin used for recording the signal"
   },
-  "nev_dig_factor": {
+  "NevDigFactor": {
     "Description": "Digitization factor of the nev file"
   },
-  "nb_sorted_units": {
+  "NbSortedUnits": {
     "Description": "Number of sorted units on this channel"
   },
-  "nev_hi_freq_order": {
+  "NevHiFreqOrder": {
     "Description": "High pass order of the frequency filter"
   },
-  "nev_hi_freq_type": {
+  "NevHiFreqType": {
     "Description": "Type of the high pass frequency filter"
   },
-  "nev_lo_freq_order": {
+  "NevLoFreqOrder": {
     "Description": "Low pass order of the frequency filter"
   },
-  "nev_lo_freq_type": {
+  "NevLoFreqType": {
     "Description": "Type of the high pass frequency filter"
   },
-  "nsx_hi_freq_order": {
+  "NsxHiFreqOrder": {
     "Description": "Order of the high pass frequency filter"
   },
-  "nsx_lo_freq_order": {
+  "NsxLoFreqOrder": {
     "Description": "Order of the low pass frequency filter"
   },
-  "nsx_hi_freq_type": {
+  "NsxHiFreqType": {
     "Description": "Type of the high pass frequency filter"
   },
-  "nsx_lo_freq_type": {
+  "NsxLoFreqType": {
     "Description": "Type of the low pass frequency filter"
   },
-  "nsx": {
+  "Nsx": {
     "Description": "NsX value used for storing of the signal"
   },
-  "hi_pass_freq": {
+  "HiPassFreq": {
     "Description": "Cutoff frequency of the high pass filter"
   },
-  "lo_pass_freq": {
+  "LoPassFreq": {
     "Description": "Cutoff frequency of the low pass filter"
   },
-  "hi_pass_order": {
+  "HiPassOrder": {
     "Description": "Order of the high pass filter"
   },
-  "lo_pass_order": {
+  "LoPassOrder": {
     "Description": "Order of the low pass filter"
   },
-  "filter_type": {
+  "FilterType": {
     "Description": "Type of filter used"
   },
-  "electrode_reject_LFC": {
+  "ElectrodeRejectLfc": {
     "Description": "Rejection of the signal in low frequency components (TRUE/FALSE)"
   },
-  "electrode_reject_IFC": {
+  "ElectrodeRejectIfc": {
     "Description": "Rejection of the signal in intermediate frequency components (TRUE/FALSE)"
   },
-  "electrode_reject_HFC": {
+  "ElectrodeRejectHfc": {
     "Description": "Rejection of the signal in high frequency components (TRUE/FALSE)"
   },
-  "connector_aligned_id": {
-    "Description": "channelID in a spatially organized grid"
+  "ConnectorAlignedId": {
+    "Description": "channelId in a spatially organized grid"
   },
-  "coordinates_x": {
+  "CoordinatesX": {
     "Description": "X-coordinate of the channel"
   },
-  "coordinates_y": {
+  "CoordinatesY": {
     "Description": "Y-coordinate of the channel"
   }
 }

+ 1 - 1
ephys_nix/sub-l/ses-101210/ephys/sub-l_ses-101210_task-r2g_run-001_probes.tsv

@@ -1,2 +1,2 @@
-probeID	type	location	placement_picture	hemisphere	manufacturer	device_serial_number	contact_count	depth	width	height	dimension_units	wires_material	wires_diameter	wires_length	wires_units	owner
+probe_id	type	location	placement_picture	hemisphere	manufacturer	device_serial_number	contact_count	depth	width	height	dimension_units	wires_material	wires_diameter	wires_length	wires_units	owner
 prob-1025-0503	utah array	M1	https://www.nature.com/articles/sdata201855/figures/1	right	Blackrock Microsystems	1025-0503	100	1.5	4	4	mm	Pt/Au	2.5E-05	0.04	m	RIKEN-BSI, Japan

+ 7 - 7
ephys_nix/sub-l/sub-l_sessions.json

@@ -1,23 +1,23 @@
 {
-  "sessionID": {
+  "SessionId": {
     "Description": "Unique identifier of the session"
   },
-  "session_quality": {
+  "SessionQuality": {
     "Description": "General quality of the session (excellent/good/ok/bad)"
   },
-  "data_quality": {
+  "DataQuality": {
     "Description": "Quality of the recorded data (excellent/good/ok/bad)"
   },
-  "#_trials": {
+  "#Trials": {
     "Description": "Number of trial within the session"
   },
-  "comment": {
+  "Comment": {
     "Description": "Comment by the experimenter"
   },
-  "weekday": {
+  "Weekday": {
     "Description": "Day of the week the recording was performed (monday,tuesday,...)"
   },
-  "noisy": {
+  "Noisy": {
     "Description": "Was noise observed in the data during the recording (yes/no)"
   }
 }

+ 2 - 1
ephys_nix/sub-l/sub-l_sessions.tsv

@@ -1,2 +1,3 @@
-sessionID	session_quality	data_quality	#_trials	comment	weekday	noisy
+"session_id
+"	session_quality	data_quality	#_trials	comment	weekday	noisy
 101210	excellent	good	204	n/a	friday	yes

+ 1 - 1
ephys_nix/tasks.json

@@ -1,5 +1,5 @@
 {
-  "taskID": {
+  "TaskID": {
     "Description": "Unique identifier of the task",
     "Level": {
       "r2g": {

+ 1 - 1
ephys_nix/tasks.tsv

@@ -1,2 +1,2 @@
-taskID
+task_id
 task-r2g