gin commit from nit-ope-de04

New files: 26

ephys_patchclamp/dataset_description.json

@@ -0,0 +1,20 @@
+{
+  "Name": "Electrophysiology",
+  "BIDSVersion": "1.6.0",
+  "License": "CC BY 4.0",
+  "Authors": [
+    "NW",
+    "NW",
+    "NW",
+    "NW"
+  ],
+  "Acknowledgements": "We thank the Rudolf the reindeer, the christmas gnomes and Miss Moneypenny.",
+  "HowToAcknowledge": "Bond J, Claus S (2000) How to deliver 1 Million parcel in one night. https://doi.org/007/007 ",
+  "Funding": [
+    "ANR blahblah",
+    "ANR blahblah",
+    "ANR blahblah",
+    "ANR blahblah"
+  ],
+  "ReferencesAndLinks": "https://doi.org/007/007"
+}

ephys_patchclamp/participants.json

@@ -0,0 +1,5 @@
+{
+  "age":{
+    "units": "week"
+  }
+}

ephys_patchclamp/participants.tsv

@@ -0,0 +1,5 @@
+participant_id	species	age	sex	birthday
+sub-160314	rattus norvegicus	9	M	2001-01-01T00:00:00
+sub-160314	rattus norvegicus	9	M	2001-01-01T00:00:00
+sub-160315	rattus norvegicus	9	M	2001-01-01T00:00:00
+sub-160315	rattus norvegicus	9	M	2001-01-01T00:00:00

ephys_patchclamp/samples.tsv

@@ -0,0 +1,7 @@
+sample_id	sample_type	participant_id
+sample-slice01	tissue	sub-20160314
+sample-slice01cell01	in vitro differentiated cells	sub-20160314
+sample-slice02	tissue	sub-20160315
+sample-slice02cell01	in vitro differentiated cells	sub-20160315
+sample-slice02cell02	in vitro differentiated cells	sub-20160315
+

ephys_patchclamp/sub-160314/ephys/sub-160314_ephys.json

@@ -0,0 +1,5 @@
+{
+    "InstitutionName": "Institut de Neurosciences de la Timone (INT), UMR7289, CNRS, Aix-Marseille Université, Marseille, France",
+    "PowerLineFrequency": "50 Hz",
+    "Manufacturer": "Multiclamp"
+}

ephys_patchclamp/sub-160314/ephys/sub-160314_sample-slice01cell01_run-1_channels.tsv

@@ -0,0 +1,3 @@
+channel_id	contact_id	type	unit	sampling_frequency	recording_mode
+channel_0	contact_0	INT	V	10000	voltage_clamp
+

ephys_patchclamp/sub-160314/ephys/sub-160314_sample-slice01cell01_run-1_contacts.json

@@ -0,0 +1,7 @@
+{
+    "pipette_solution": {
+        "Levels": {
+            "standard": "TEA/CsAc/GTP based Low Cl (Ecl -60) 10 mM EGTA"
+        }
+    }
+}

ephys_patchclamp/sub-160314/ephys/sub-160314_sample-slice01cell01_run-1_contacts.tsv

@@ -0,0 +1,3 @@
+contact_id	probe_id	impedance	impedance_unit	pipette_solution	location
+contact_0	probe_0	5	MOhm	standard	spinal cord
+

ephys_patchclamp/sub-160314/ephys/sub-160314_sample-slice01cell01_run-1_probes.tsv

@@ -0,0 +1,2 @@
+probe_id	type	material
+probe_0	acute	glass

ephys_patchclamp/sub-160314/ephys/sub-160314_sample-slice01cell01_run-2_channels.tsv

@@ -0,0 +1,3 @@
+channel_id	contact_id	type	unit	sampling_frequency	recording_mode
+channel_1	contact_1	INT	V	10000	voltage_clamp
+

ephys_patchclamp/sub-160314/ephys/sub-160314_sample-slice01cell01_run-2_contacts.json

@@ -0,0 +1,7 @@
+{
+    "pipette_solution": {
+        "Levels": {
+            "standard": "TEA/CsAc/GTP based Low Cl (Ecl -60) 10 mM EGTA"
+        }
+    }
+}

ephys_patchclamp/sub-160314/ephys/sub-160314_sample-slice01cell01_run-2_contacts.tsv

@@ -0,0 +1,3 @@
+contact_id	probe_id	impedance	impedance_unit	pipette_solution	location
+contact_1	probe_1	5	MOhm	standard	spinal cord
+

ephys_patchclamp/sub-160314/ephys/sub-160314_sample-slice01cell01_run-2_probes.tsv

@@ -0,0 +1,2 @@
+probe_id	type	material
+probe_1	acute	glass

ephys_patchclamp/sub-160315/ephys/sub-160315_ephys.json

@@ -0,0 +1,5 @@
+{
+    "InstitutionName": "Institut de Neurosciences de la Timone (INT), UMR7289, CNRS, Aix-Marseille Université, Marseille, France",
+    "PowerLineFrequency": "50 Hz",
+    "Manufacturer": "Multiclamp"
+}

ephys_patchclamp/sub-160315/ephys/sub-160315_sample-slice02cell01_channels.tsv

@@ -0,0 +1,3 @@
+channel_id	contact_id	type	unit	sampling_frequency	recording_mode
+channel_2	contact_2	INT	V	10000	voltage_clamp
+

ephys_patchclamp/sub-160315/ephys/sub-160315_sample-slice02cell01_contacts.json

@@ -0,0 +1,7 @@
+{
+    "pipette_solution": {
+        "Levels": {
+            "standard": "TEA/CsAc/GTP based Low Cl (Ecl -60) 10 mM EGTA"
+        }
+    }
+}

ephys_patchclamp/sub-160315/ephys/sub-160315_sample-slice02cell01_contacts.tsv

@@ -0,0 +1,3 @@
+contact_id	probe_id	impedance	impedance_unit	pipette_solution	location
+contact_2	probe_2	5	MOhm	standard	spinal cord
+

ephys_patchclamp/sub-160315/ephys/sub-160315_sample-slice02cell01_probes.tsv

@@ -0,0 +1,2 @@
+probe_id	type	material
+probe_2	acute	glass

ephys_patchclamp/sub-160315/ephys/sub-160315_sample-slice02cell02_channels.tsv

@@ -0,0 +1,3 @@
+channel_id	contact_id	type	unit	sampling_frequency	recording_mode
+channel_3	contact_3	INT	V	10000	voltage_clamp
+

ephys_patchclamp/sub-160315/ephys/sub-160315_sample-slice02cell02_contacts.json

@@ -0,0 +1,7 @@
+{
+    "pipette_solution": {
+        "Levels": {
+            "standard": "TEA/CsAc/GTP based Low Cl (Ecl -60) 10 mM EGTA"
+        }
+    }
+}

ephys_patchclamp/sub-160315/ephys/sub-160315_sample-slice02cell02_contacts.tsv

@@ -0,0 +1,3 @@
+contact_id	probe_id	impedance	impedance_unit	pipette_solution	location
+contact_3	probe_3	5	MOhm	standard	spinal cord
+

ephys_patchclamp/sub-160315/ephys/sub-160315_sample-slice02cell02_probes.tsv

@@ -0,0 +1,2 @@
+probe_id	type	material
+probe_3	acute	glass