Aitor Morales-Gregorio c448401bc3 Upload merged areas, positions and IDs metadata file 2 månader sedan
..
cross_talk_removal 51445b6649 Welcome to the V1-V4 resting state data repository 3 år sedan
epochs 51445b6649 Welcome to the V1-V4 resting state data repository 3 år sedan
experimental_setup c448401bc3 Upload merged areas, positions and IDs metadata file 2 månader sedan
eye_signals 51445b6649 Welcome to the V1-V4 resting state data repository 3 år sedan
receptive_fields 51445b6649 Welcome to the V1-V4 resting state data repository 3 år sedan
signal_to_noise_ratio 51445b6649 Welcome to the V1-V4 resting state data repository 3 år sedan
stimulus_evoked_response_timing 51445b6649 Welcome to the V1-V4 resting state data repository 3 år sedan
subjects 51445b6649 Welcome to the V1-V4 resting state data repository 3 år sedan
README.md 51445b6649 Welcome to the V1-V4 resting state data repository 3 år sedan

README.md

Metadata associated to the experiment.

In this directory one can find all the raw metadata files that describe the experiment. All the metadata is combined into a single odml file for each session.

Metadata type Subject Links Description
Epochs csv files Description of task/behavioral epoch start time, success/failure, end time and type of task/behavior
Impedances A txt files Impedance data as measured in different dates in txt and mat files.
L txt files
ID mapping A mat | csv Mapping of channels across array based (1 to 64), NSP based (1 to 128) and global indexing (1 to 1024). Area location of electrodes (V1 or V4), array ID (1 to 16) and NSP ID (1 to 8) also indicated.
L mat | csv
Array and electrode positions A csv file Schematic array positions in the cortex. This should only be used for visualization, they are not the actual accurate positions and distances between arrays.
L csv file
csv file Electrode positions within the array.
Experimental equipment xls file Description of recording equipment common to all experiments and subjects.
Subject metadata A xls file Metadata specifict to subject such as age, surgeries and array specifications.
L xls file
Eye signal epoch plots Eye signal plots Plot of behavior epochs during resting state, as derived from the eye signals.
Receptive Fields A Large bars | Small bars Receptive Field (RF) mapping, positions of RF center,
edges and eccentricity. As well as, SNR values specific to this task.
L Large bars | Small bars
Combined RF and plots
Signal to noise ratio (SNR) metadata A 041018 | 140819 | 150819 | 160819 Averaged trial response plots. The plot arrangement does not correspond to the electrode arrangement exactly.
L 250717 | 090817 | 100817
Combined SNR and plots SNR and stimulus onset metadata and plots.
Response onset plots
Cross talk removal metadata A 140819 | 150819 | 160819 Electrode removal process plots, Synchrofact participation (SP) per electrode plots and complexity histograms (both global and electrode-wise) for each removal iteration.
L 250717 | 090817 | 100817
csv files Order of electrode removal for each RS session, with maximum SP and highest complexity in each iteration.

Note: The links in the table above point to the latest version of the data repository and not to the published instance.

datacite.yml
Title 1024-channel electrophysiological recordings in macaque V1 and V4 during resting state
Authors Chen,Xing;Department of Vision & Cognition, Netherlands Institute for Neuroscience, Meibergdreef 47, 1105 BA, Amsterdam, Netherlands;ORCID:0000-0002-3589-1750
Morales-Gregorio,Aitor;Institute of Neuroscience and Medicine (INM-6) and Institute for Advanced Simulation (IAS-6) and JARA Institute Brain Structure-Function Relationships (INM-10), Jülich Research Centre, Jülich, Germany; and Institute of Zoology, University of Cologne, Cologne, Germany;ORCID:0000-0002-2403-928X
Sprenger,Julia;Institute of Neuroscience and Medicine (INM-6) and Institute for Advanced Simulation (IAS-6) and JARA Institute Brain Structure-Function Relationships (INM-10), Jülich Research Centre, Jülich, Germany; and Theoretical Systems Neurobiology, RWTH Aachen University, Aachen, Germany; and Institut de Neurosciences de La Timone, CNRS & Aix-Marseille University, Marseille, France;ORCID:0000-0002-9986-7477
Kleinjohann,Alexander;Institute of Neuroscience and Medicine (INM-6) and Institute for Advanced Simulation (IAS-6) and JARA Institute Brain Structure-Function Relationships (INM-10), Jülich Research Centre, Jülich, Germany; and Theoretical Systems Neurobiology, RWTH Aachen University, Aachen, Germany;ORCID:0000-0003-3776-4226
Sridhar,Shashwat;Institute of Neuroscience and Medicine (INM-6) and Institute for Advanced Simulation (IAS-6) and JARA Institute Brain Structure-Function Relationships (INM-10), Jülich Research Centre, Jülich, Germany; and Theoretical Systems Neurobiology, RWTH Aachen University, Aachen, Germany;ORCID:0000-0002-8837-8555
van Albada,Sacha;Institute of Neuroscience and Medicine (INM-6) and Institute for Advanced Simulation (IAS-6) and JARA Institute Brain Structure-Function Relationships (INM-10), Jülich Research Centre, Jülich, Germany; and Institute of Zoology, University of Cologne, Cologne, Germany;ORCID:0000-0003-0682-4855
Grün,Sonja;Institute of Neuroscience and Medicine (INM-6) and Institute for Advanced Simulation (IAS-6) and JARA Institute Brain Structure-Function Relationships (INM-10), Jülich Research Centre, Jülich, Germany; and Theoretical Systems Neurobiology, RWTH Aachen University, Aachen, Germany;ORCID:0000-0003-2829-2220
Roelfsema,Pieter;Department of Vision & Cognition, Netherlands Institute for Neuroscience, Meibergdreef 47, 1105 BA, Amsterdam, Netherlands; Department of Integrative Neurophysiology, VU University, De Boelelaan 1085, 1081 HV, Amsterdam, Netherlands; and Department of Psychiatry, Academic Medical Center, Postbus 22660, 1100 DD, Amsterdam, Netherlands;ORCID:0000-0002-1625-0034
Description We provide electrophysiological recordings in Macaque V1 and V4 cortex with 16 Utah arrays in two subjects.
License CC BY 4.0 (https://creativecommons.org/licenses/by/4.0/)
References Chen, X., Morales-Gregorio, A., Sprenger, J., Kleinjohann, A., Sridhar, S., van Albada, S. J., Grün, S., Roelfsema, P. R. (2022). 1024-channel electrophysiological recordings in macaque V1 and V4 during resting state. Scientific Data Vol. 9, Article 77. [doi::10.1038/s41597-022-01180-1] (IsDescribedBy)
Chen, X., Wang, F., Fernandez, E., Roelfsema, P. R. (2020). Shape perception via a high-channel-count neuroprosthesis in monkey visual cortex. Science Vol. 370, Issue 6521, pp. 1191-1196. [doi:10.1126/science.abd7435] (IsReferencedBy)
Funding NWO, STW, P15-42
HBP, FPA (650003)
EU, ERC, 339490
EU H2020 Framework Programme for Research and Innovation, HBP SGA2, 785907
EU H2020 Framework Programme for Research and Innovation, HBP SGA3, 945539
DFG, 368482240/RTG 2416
Keywords Electrophysiology
Local Field Potential
Macaque
Multiunit activity
Neuroscience
Resting state
Synchrofact removal
Utah Array
Visual area 1 (V1)
Visual area 4 (V4)
Visual Cortex
Resource Type Dataset