Aitor Morales-Gregorio c448401bc3 Upload merged areas, positions and IDs metadata file | пре 2 месеци | |
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.. | ||
cross_talk_removal | пре 3 година | |
epochs | пре 3 година | |
experimental_setup | пре 2 месеци | |
eye_signals | пре 3 година | |
receptive_fields | пре 3 година | |
signal_to_noise_ratio | пре 3 година | |
stimulus_evoked_response_timing | пре 3 година | |
subjects | пре 3 година | |
README.md | пре 3 година |
In this directory one can find all the raw metadata files that describe the experiment. All the metadata is combined into a single odml file for each session.
Metadata type | Subject | Links | Description |
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Epochs | csv files | Description of task/behavioral epoch start time, success/failure, end time and type of task/behavior | |
Impedances | A | txt files | Impedance data as measured in different dates in txt and mat files. |
L | txt files | ||
ID mapping | A | mat | csv | Mapping of channels across array based (1 to 64), NSP based (1 to 128) and global indexing (1 to 1024). Area location of electrodes (V1 or V4), array ID (1 to 16) and NSP ID (1 to 8) also indicated. |
L | mat | csv | ||
Array and electrode positions | A | csv file | Schematic array positions in the cortex. This should only be used for visualization, they are not the actual accurate positions and distances between arrays. |
L | csv file | ||
csv file | Electrode positions within the array. | ||
Experimental equipment | xls file | Description of recording equipment common to all experiments and subjects. | |
Subject metadata | A | xls file | Metadata specifict to subject such as age, surgeries and array specifications. |
L | xls file | ||
Eye signal epoch plots | Eye signal plots | Plot of behavior epochs during resting state, as derived from the eye signals. | |
Receptive Fields | A | Large bars | Small bars | Receptive Field (RF) mapping, positions of RF center, edges and eccentricity. As well as, SNR values specific to this task. |
L | Large bars | Small bars | ||
Combined RF and plots | |||
Signal to noise ratio (SNR) metadata | A | 041018 | 140819 | 150819 | 160819 | Averaged trial response plots. The plot arrangement does not correspond to the electrode arrangement exactly. |
L | 250717 | 090817 | 100817 | ||
Combined SNR and plots | SNR and stimulus onset metadata and plots. | ||
Response onset plots | |||
Cross talk removal metadata | A | 140819 | 150819 | 160819 | Electrode removal process plots, Synchrofact participation (SP) per electrode plots and complexity histograms (both global and electrode-wise) for each removal iteration. |
L | 250717 | 090817 | 100817 | ||
csv files | Order of electrode removal for each RS session, with maximum SP and highest complexity in each iteration. |
Note: The links in the table above point to the latest version of the data repository and not to the published instance.
datacite.yml | |
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Title | 1024-channel electrophysiological recordings in macaque V1 and V4 during resting state |
Authors |
Chen,Xing;Department of Vision & Cognition, Netherlands Institute for Neuroscience, Meibergdreef 47, 1105 BA, Amsterdam, Netherlands;ORCID:0000-0002-3589-1750
Morales-Gregorio,Aitor;Institute of Neuroscience and Medicine (INM-6) and Institute for Advanced Simulation (IAS-6) and JARA Institute Brain Structure-Function Relationships (INM-10), Jülich Research Centre, Jülich, Germany; and Institute of Zoology, University of Cologne, Cologne, Germany;ORCID:0000-0002-2403-928X Sprenger,Julia;Institute of Neuroscience and Medicine (INM-6) and Institute for Advanced Simulation (IAS-6) and JARA Institute Brain Structure-Function Relationships (INM-10), Jülich Research Centre, Jülich, Germany; and Theoretical Systems Neurobiology, RWTH Aachen University, Aachen, Germany; and Institut de Neurosciences de La Timone, CNRS & Aix-Marseille University, Marseille, France;ORCID:0000-0002-9986-7477 Kleinjohann,Alexander;Institute of Neuroscience and Medicine (INM-6) and Institute for Advanced Simulation (IAS-6) and JARA Institute Brain Structure-Function Relationships (INM-10), Jülich Research Centre, Jülich, Germany; and Theoretical Systems Neurobiology, RWTH Aachen University, Aachen, Germany;ORCID:0000-0003-3776-4226 Sridhar,Shashwat;Institute of Neuroscience and Medicine (INM-6) and Institute for Advanced Simulation (IAS-6) and JARA Institute Brain Structure-Function Relationships (INM-10), Jülich Research Centre, Jülich, Germany; and Theoretical Systems Neurobiology, RWTH Aachen University, Aachen, Germany;ORCID:0000-0002-8837-8555 van Albada,Sacha;Institute of Neuroscience and Medicine (INM-6) and Institute for Advanced Simulation (IAS-6) and JARA Institute Brain Structure-Function Relationships (INM-10), Jülich Research Centre, Jülich, Germany; and Institute of Zoology, University of Cologne, Cologne, Germany;ORCID:0000-0003-0682-4855 Grün,Sonja;Institute of Neuroscience and Medicine (INM-6) and Institute for Advanced Simulation (IAS-6) and JARA Institute Brain Structure-Function Relationships (INM-10), Jülich Research Centre, Jülich, Germany; and Theoretical Systems Neurobiology, RWTH Aachen University, Aachen, Germany;ORCID:0000-0003-2829-2220 Roelfsema,Pieter;Department of Vision & Cognition, Netherlands Institute for Neuroscience, Meibergdreef 47, 1105 BA, Amsterdam, Netherlands; Department of Integrative Neurophysiology, VU University, De Boelelaan 1085, 1081 HV, Amsterdam, Netherlands; and Department of Psychiatry, Academic Medical Center, Postbus 22660, 1100 DD, Amsterdam, Netherlands;ORCID:0000-0002-1625-0034 |
Description | We provide electrophysiological recordings in Macaque V1 and V4 cortex with 16 Utah arrays in two subjects. |
License | CC BY 4.0 (https://creativecommons.org/licenses/by/4.0/) |
References |
Chen, X., Morales-Gregorio, A., Sprenger, J., Kleinjohann, A., Sridhar, S., van Albada, S. J., Grün, S., Roelfsema, P. R. (2022). 1024-channel electrophysiological recordings in macaque V1 and V4 during resting state. Scientific Data Vol. 9, Article 77. [doi::10.1038/s41597-022-01180-1] (IsDescribedBy)
Chen, X., Wang, F., Fernandez, E., Roelfsema, P. R. (2020). Shape perception via a high-channel-count neuroprosthesis in monkey visual cortex. Science Vol. 370, Issue 6521, pp. 1191-1196. [doi:10.1126/science.abd7435] (IsReferencedBy) |
Funding |
NWO, STW, P15-42
HBP, FPA (650003) EU, ERC, 339490 EU H2020 Framework Programme for Research and Innovation, HBP SGA2, 785907 EU H2020 Framework Programme for Research and Innovation, HBP SGA3, 945539 DFG, 368482240/RTG 2416 |
Keywords |
Electrophysiology
Local Field Potential Macaque Multiunit activity Neuroscience Resting state Synchrofact removal Utah Array Visual area 1 (V1) Visual area 4 (V4) Visual Cortex |
Resource Type |
Dataset |