| 1234567891011121314151617181920212223242526 |
- """Provide custom marker for FC on smoothed images."""
- from junifer.api.decorators import register_marker
- from junifer.markers import FunctionalConnectivityParcels
- from nilearn.image import smooth_img
- from junifer.utils import logger
- @register_marker
- class SmoothedFC(FunctionalConnectivityParcels):
- """Calculate FC after smoothing fMRI image."""
- def __init__(self, fwhm, name=None, *args, **kwargs):
- """Initialise class."""
- super().__init__(name=name, *args, **kwargs)
- print("=" * 80)
- print(fwhm)
- print("=" * 80)
- self._fwhm = fwhm
- logger.info(f"FWHM IS {fwhm}")
- def compute(self, input, extra_input=None):
- """Implement compute."""
- input["data"] = smooth_img(input["data"], fwhm=self._fwhm)
- return super().compute(input=input, extra_input=extra_input)
|
