aomic-fc/code/junifer_jobs/PREPROCESS_ID1000/logs/junifer_run_0717.out

Activating junifer_release
Running junifer run /data/project/identification_prediction/data/aomic-fc_junifer-release/code/junifer_jobs/PREPROCESS_ID1000/config.yaml --verbose info --element 0717 in virtual environment
2023-02-07 11:18:36,767 - JUNIFER - INFO - ===== Lib Versions =====
2023-02-07 11:18:36,767 - JUNIFER - INFO - numpy: 1.23.5
2023-02-07 11:18:36,767 - JUNIFER - INFO - scipy: 1.10.0rc1
2023-02-07 11:18:36,767 - JUNIFER - INFO - pandas: 1.5.2
2023-02-07 11:18:36,767 - JUNIFER - INFO - nilearn: 0.9.2
2023-02-07 11:18:36,767 - JUNIFER - INFO - nibabel: 4.0.2
2023-02-07 11:18:36,767 - JUNIFER - INFO - junifer: 0.0.2.dev94
2023-02-07 11:18:36,767 - JUNIFER - INFO - ========================
2023-02-07 11:18:36,767 - JUNIFER - INFO - Parsing yaml file: /data/project/identification_prediction/data/aomic-fc_junifer-release/code/junifer_jobs/PREPROCESS_ID1000/config.yaml
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REGISTERING MY OWN PARCELLATION
2023-02-07 11:18:36,780 - JUNIFER - INFO - Fetching one of Schaefer parcellations.
2023-02-07 11:18:36,780 - JUNIFER - INFO - Parcellation parameters:
2023-02-07 11:18:36,780 - JUNIFER - INFO - 	n_rois: 100
2023-02-07 11:18:36,780 - JUNIFER - INFO - 	yeo_networks: 17
2023-02-07 11:18:36,780 - JUNIFER - INFO - 	resolution: 2
2023-02-07 11:18:36,785 - JUNIFER - INFO - Loading parcellation /home/lsasse/junifer/data/parcellations/schaefer_2018/Schaefer2018_100Parcels_17Networks_order_FSLMNI152_2mm.nii.gz
2023-02-07 11:18:36,828 - JUNIFER - INFO - Fetching one of Schaefer parcellations.
2023-02-07 11:18:36,828 - JUNIFER - INFO - Parcellation parameters:
2023-02-07 11:18:36,828 - JUNIFER - INFO - 	n_rois: 200
2023-02-07 11:18:36,828 - JUNIFER - INFO - 	yeo_networks: 17
2023-02-07 11:18:36,828 - JUNIFER - INFO - 	resolution: 2
2023-02-07 11:18:36,832 - JUNIFER - INFO - Loading parcellation /home/lsasse/junifer/data/parcellations/schaefer_2018/Schaefer2018_200Parcels_17Networks_order_FSLMNI152_2mm.nii.gz
2023-02-07 11:18:36,875 - JUNIFER - INFO - Fetching one of Schaefer parcellations.
2023-02-07 11:18:36,875 - JUNIFER - INFO - Parcellation parameters:
2023-02-07 11:18:36,875 - JUNIFER - INFO - 	n_rois: 400
2023-02-07 11:18:36,875 - JUNIFER - INFO - 	yeo_networks: 17
2023-02-07 11:18:36,875 - JUNIFER - INFO - 	resolution: 2
2023-02-07 11:18:36,879 - JUNIFER - INFO - Loading parcellation /home/lsasse/junifer/data/parcellations/schaefer_2018/Schaefer2018_400Parcels_17Networks_order_FSLMNI152_2mm.nii.gz
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2023-02-07 11:18:36,924 - JUNIFER - INFO - Registering SmoothedFC in marker
2023-02-07 11:18:36,924 - JUNIFER - WARNING - `datadir` is None, creating a temporary directory
2023-02-07 11:18:36,925 - JUNIFER - INFO - `datadir` set to /var/lib/condor/execute/dir_1437769/tmp2bst3n6q
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6
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2023-02-07 11:18:36,925 - JUNIFER - INFO - FWHM IS 6
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6
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2023-02-07 11:18:36,925 - JUNIFER - INFO - FWHM IS 6
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6
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2023-02-07 11:18:36,925 - JUNIFER - INFO - FWHM IS 6
2023-02-07 11:20:19,181 - JUNIFER - INFO - Getting element 0717
2023-02-07 11:22:37,375 - JUNIFER - INFO - Fitting pipeline
2023-02-07 11:22:37,376 - JUNIFER - INFO - Reading BOLD from /var/lib/condor/execute/dir_1437769/tmp2bst3n6q/derivatives/fmriprep/sub-0717/func/sub-0717_task-moviewatching_space-MNI152NLin2009cAsym_desc-preproc_bold.nii.gz
2023-02-07 11:22:37,376 - JUNIFER - INFO - BOLD is type NIFTI
2023-02-07 11:22:37,381 - JUNIFER - INFO - Reading BOLD_confounds from /var/lib/condor/execute/dir_1437769/tmp2bst3n6q/derivatives/fmriprep/sub-0717/func/sub-0717_task-moviewatching_desc-confounds_regressors.tsv
2023-02-07 11:22:37,381 - JUNIFER - INFO - BOLD_confounds is type TSV
2023-02-07 11:22:37,408 - JUNIFER - INFO - Reading BOLD_mask from /var/lib/condor/execute/dir_1437769/tmp2bst3n6q/derivatives/fmriprep/sub-0717/func/sub-0717_task-moviewatching_space-MNI152NLin2009cAsym_desc-brain_mask.nii.gz
2023-02-07 11:22:37,408 - JUNIFER - INFO - BOLD_mask is type NIFTI
2023-02-07 11:22:37,410 - JUNIFER - INFO - Reading T1w from /var/lib/condor/execute/dir_1437769/tmp2bst3n6q/derivatives/fmriprep/sub-0717/anat/sub-0717_space-MNI152NLin2009cAsym_desc-preproc_T1w.nii.gz
2023-02-07 11:22:37,410 - JUNIFER - INFO - T1w is type NIFTI
2023-02-07 11:22:37,411 - JUNIFER - INFO - Reading T1w_mask from /var/lib/condor/execute/dir_1437769/tmp2bst3n6q/derivatives/fmriprep/sub-0717/anat/sub-0717_space-MNI152NLin2009cAsym_desc-brain_mask.nii.gz
2023-02-07 11:22:37,411 - JUNIFER - INFO - T1w_mask is type NIFTI
2023-02-07 11:22:37,412 - JUNIFER - INFO - Reading probseg_CSF from /var/lib/condor/execute/dir_1437769/tmp2bst3n6q/derivatives/fmriprep/sub-0717/anat/sub-0717_space-MNI152NLin2009cAsym_label-CSF_probseg.nii.gz
2023-02-07 11:22:37,412 - JUNIFER - INFO - probseg_CSF is type NIFTI
2023-02-07 11:22:37,412 - JUNIFER - INFO - Reading probseg_GM from /var/lib/condor/execute/dir_1437769/tmp2bst3n6q/derivatives/fmriprep/sub-0717/anat/sub-0717_space-MNI152NLin2009cAsym_label-GM_probseg.nii.gz
2023-02-07 11:22:37,413 - JUNIFER - INFO - probseg_GM is type NIFTI
2023-02-07 11:22:37,413 - JUNIFER - INFO - Reading probseg_WM from /var/lib/condor/execute/dir_1437769/tmp2bst3n6q/derivatives/fmriprep/sub-0717/anat/sub-0717_space-MNI152NLin2009cAsym_label-WM_probseg.nii.gz
2023-02-07 11:22:37,413 - JUNIFER - INFO - probseg_WM is type NIFTI
2023-02-07 11:22:37,414 - JUNIFER - INFO - Reading DWI from /var/lib/condor/execute/dir_1437769/tmp2bst3n6q/derivatives/dwipreproc/sub-0717/dwi/sub-0717_desc-preproc_dwi.nii.gz
2023-02-07 11:22:37,414 - JUNIFER - INFO - DWI is type NIFTI
2023-02-07 11:22:37,415 - JUNIFER - INFO - Preprocessing data
2023-02-07 11:22:37,415 - JUNIFER - INFO - Computing BOLD
2023-02-07 11:22:39,355 - JUNIFER - INFO - No `t_r` specified, using t_r from nifti header
2023-02-07 11:22:39,356 - JUNIFER - INFO - Read t_r from nifti header: 2.200000047683716
2023-02-07 11:22:39,964 - JUNIFER - INFO - Cleaning image
2023-02-07 11:22:50,946 - JUNIFER - INFO - Fitting marker parccortical-Schaefer100x17FSLMNI_parcsubcortical-TianxS2x3TxMNInonlinear2009cAsym_marker-empiricalFC
2023-02-07 11:22:51,012 - JUNIFER - INFO - Computing BOLD
2023-02-07 11:22:51,013 - JUNIFER - INFO - Fetching one of Schaefer parcellations.
2023-02-07 11:22:51,013 - JUNIFER - INFO - Parcellation parameters:
2023-02-07 11:22:51,013 - JUNIFER - INFO - 	n_rois: 100
2023-02-07 11:22:51,013 - JUNIFER - INFO - 	yeo_networks: 17
2023-02-07 11:22:51,013 - JUNIFER - INFO - 	resolution: 3.0
2023-02-07 11:22:51,016 - JUNIFER - INFO - Loading parcellation /home/lsasse/junifer/data/parcellations/schaefer_2018/Schaefer2018_100Parcels_17Networks_order_FSLMNI152_2mm.nii.gz
2023-02-07 11:22:51,099 - JUNIFER - INFO - Fetching one of Tian parcellations.
2023-02-07 11:22:51,099 - JUNIFER - INFO - Parcellation parameters:
2023-02-07 11:22:51,099 - JUNIFER - INFO - 	scale: 2
2023-02-07 11:22:51,099 - JUNIFER - INFO - 	space: MNInonlinear2009cAsym
2023-02-07 11:22:51,099 - JUNIFER - INFO - 	magneticfield: 3T
2023-02-07 11:22:51,099 - JUNIFER - INFO - 	resolution: 3.0
2023-02-07 11:22:51,101 - JUNIFER - INFO - Loading parcellation /home/lsasse/junifer/data/parcellations/Tian2020MSA_v1.1/3T/Subcortex-Only/Tian_Subcortex_S2_3T_2009cAsym.nii.gz
2023-02-07 11:22:53,630 - JUNIFER - INFO - Storing in <SQLiteFeatureStorage @ ../../../junifer_storage/ID1000/ID1000 (multiple output)>
2023-02-07 11:22:53,686 - JUNIFER - WARNING - The number of columns is greater than 2000. The data will be stored in long format. This will make it slower to collect the data. Future versions of junifer will provide additional storage options that will not raise this warning.
2023-02-07 11:22:53,805 - JUNIFER - INFO - Fitting marker parccortical-Schaefer200x17FSLMNI_parcsubcortical-TianxS2x3TxMNInonlinear2009cAsym_marker-empiricalFC
2023-02-07 11:22:53,857 - JUNIFER - INFO - Computing BOLD
2023-02-07 11:22:53,858 - JUNIFER - INFO - Fetching one of Schaefer parcellations.
2023-02-07 11:22:53,858 - JUNIFER - INFO - Parcellation parameters:
2023-02-07 11:22:53,858 - JUNIFER - INFO - 	n_rois: 200
2023-02-07 11:22:53,858 - JUNIFER - INFO - 	yeo_networks: 17
2023-02-07 11:22:53,858 - JUNIFER - INFO - 	resolution: 3.0
2023-02-07 11:22:53,861 - JUNIFER - INFO - Loading parcellation /home/lsasse/junifer/data/parcellations/schaefer_2018/Schaefer2018_200Parcels_17Networks_order_FSLMNI152_2mm.nii.gz
2023-02-07 11:22:53,948 - JUNIFER - INFO - Fetching one of Tian parcellations.
2023-02-07 11:22:53,948 - JUNIFER - INFO - Parcellation parameters:
2023-02-07 11:22:53,949 - JUNIFER - INFO - 	scale: 2
2023-02-07 11:22:53,949 - JUNIFER - INFO - 	space: MNInonlinear2009cAsym
2023-02-07 11:22:53,949 - JUNIFER - INFO - 	magneticfield: 3T
2023-02-07 11:22:53,949 - JUNIFER - INFO - 	resolution: 3.0
2023-02-07 11:22:53,951 - JUNIFER - INFO - Loading parcellation /home/lsasse/junifer/data/parcellations/Tian2020MSA_v1.1/3T/Subcortex-Only/Tian_Subcortex_S2_3T_2009cAsym.nii.gz
2023-02-07 11:22:56,509 - JUNIFER - INFO - Storing in <SQLiteFeatureStorage @ ../../../junifer_storage/ID1000/ID1000 (multiple output)>
2023-02-07 11:22:56,573 - JUNIFER - WARNING - The number of columns is greater than 2000. The data will be stored in long format. This will make it slower to collect the data. Future versions of junifer will provide additional storage options that will not raise this warning.
2023-02-07 11:22:56,833 - JUNIFER - INFO - Fitting marker parccortical-Schaefer400x17FSLMNI_parcsubcortical-TianxS2x3TxMNInonlinear2009cAsym_marker-empiricalFC
2023-02-07 11:22:56,899 - JUNIFER - INFO - Computing BOLD
2023-02-07 11:22:56,900 - JUNIFER - INFO - Fetching one of Schaefer parcellations.
2023-02-07 11:22:56,900 - JUNIFER - INFO - Parcellation parameters:
2023-02-07 11:22:56,900 - JUNIFER - INFO - 	n_rois: 400
2023-02-07 11:22:56,900 - JUNIFER - INFO - 	yeo_networks: 17
2023-02-07 11:22:56,900 - JUNIFER - INFO - 	resolution: 3.0
2023-02-07 11:22:56,906 - JUNIFER - INFO - Loading parcellation /home/lsasse/junifer/data/parcellations/schaefer_2018/Schaefer2018_400Parcels_17Networks_order_FSLMNI152_2mm.nii.gz
2023-02-07 11:22:56,995 - JUNIFER - INFO - Fetching one of Tian parcellations.
2023-02-07 11:22:56,995 - JUNIFER - INFO - Parcellation parameters:
2023-02-07 11:22:56,995 - JUNIFER - INFO - 	scale: 2
2023-02-07 11:22:56,995 - JUNIFER - INFO - 	space: MNInonlinear2009cAsym
2023-02-07 11:22:56,995 - JUNIFER - INFO - 	magneticfield: 3T
2023-02-07 11:22:56,995 - JUNIFER - INFO - 	resolution: 3.0
2023-02-07 11:22:56,997 - JUNIFER - INFO - Loading parcellation /home/lsasse/junifer/data/parcellations/Tian2020MSA_v1.1/3T/Subcortex-Only/Tian_Subcortex_S2_3T_2009cAsym.nii.gz
2023-02-07 11:22:59,611 - JUNIFER - INFO - Storing in <SQLiteFeatureStorage @ ../../../junifer_storage/ID1000/ID1000 (multiple output)>
2023-02-07 11:22:59,700 - JUNIFER - WARNING - The number of columns is greater than 2000. The data will be stored in long format. This will make it slower to collect the data. Future versions of junifer will provide additional storage options that will not raise this warning.
2023-02-07 11:23:00,599 - JUNIFER - INFO - Fitting marker parccortical-Schaefer100x17FSLMNI_parcsubcortical-TianxS2x3TxMNInonlinear2009cAsym_marker-smoothedFC
2023-02-07 11:23:00,654 - JUNIFER - INFO - Computing BOLD
2023-02-07 11:23:02,782 - JUNIFER - INFO - Fetching one of Schaefer parcellations.
2023-02-07 11:23:02,782 - JUNIFER - INFO - Parcellation parameters:
2023-02-07 11:23:02,782 - JUNIFER - INFO - 	n_rois: 100
2023-02-07 11:23:02,782 - JUNIFER - INFO - 	yeo_networks: 17
2023-02-07 11:23:02,782 - JUNIFER - INFO - 	resolution: 3.0
2023-02-07 11:23:02,785 - JUNIFER - INFO - Loading parcellation /home/lsasse/junifer/data/parcellations/schaefer_2018/Schaefer2018_100Parcels_17Networks_order_FSLMNI152_2mm.nii.gz
2023-02-07 11:23:02,870 - JUNIFER - INFO - Fetching one of Tian parcellations.
2023-02-07 11:23:02,870 - JUNIFER - INFO - Parcellation parameters:
2023-02-07 11:23:02,870 - JUNIFER - INFO - 	scale: 2
2023-02-07 11:23:02,870 - JUNIFER - INFO - 	space: MNInonlinear2009cAsym
2023-02-07 11:23:02,870 - JUNIFER - INFO - 	magneticfield: 3T
2023-02-07 11:23:02,870 - JUNIFER - INFO - 	resolution: 3.0
2023-02-07 11:23:02,872 - JUNIFER - INFO - Loading parcellation /home/lsasse/junifer/data/parcellations/Tian2020MSA_v1.1/3T/Subcortex-Only/Tian_Subcortex_S2_3T_2009cAsym.nii.gz
2023-02-07 11:23:05,211 - JUNIFER - INFO - Storing in <SQLiteFeatureStorage @ ../../../junifer_storage/ID1000/ID1000 (multiple output)>
2023-02-07 11:23:05,270 - JUNIFER - WARNING - The number of columns is greater than 2000. The data will be stored in long format. This will make it slower to collect the data. Future versions of junifer will provide additional storage options that will not raise this warning.
2023-02-07 11:23:05,388 - JUNIFER - INFO - Fitting marker parccortical-Schaefer200x17FSLMNI_parcsubcortical-TianxS2x3TxMNInonlinear2009cAsym_marker-smoothedFC
2023-02-07 11:23:05,460 - JUNIFER - INFO - Computing BOLD
2023-02-07 11:23:07,175 - JUNIFER - INFO - Fetching one of Schaefer parcellations.
2023-02-07 11:23:07,175 - JUNIFER - INFO - Parcellation parameters:
2023-02-07 11:23:07,175 - JUNIFER - INFO - 	n_rois: 200
2023-02-07 11:23:07,175 - JUNIFER - INFO - 	yeo_networks: 17
2023-02-07 11:23:07,175 - JUNIFER - INFO - 	resolution: 3.0
2023-02-07 11:23:07,178 - JUNIFER - INFO - Loading parcellation /home/lsasse/junifer/data/parcellations/schaefer_2018/Schaefer2018_200Parcels_17Networks_order_FSLMNI152_2mm.nii.gz
2023-02-07 11:23:07,265 - JUNIFER - INFO - Fetching one of Tian parcellations.
2023-02-07 11:23:07,265 - JUNIFER - INFO - Parcellation parameters:
2023-02-07 11:23:07,265 - JUNIFER - INFO - 	scale: 2
2023-02-07 11:23:07,265 - JUNIFER - INFO - 	space: MNInonlinear2009cAsym
2023-02-07 11:23:07,265 - JUNIFER - INFO - 	magneticfield: 3T
2023-02-07 11:23:07,265 - JUNIFER - INFO - 	resolution: 3.0
2023-02-07 11:23:07,267 - JUNIFER - INFO - Loading parcellation /home/lsasse/junifer/data/parcellations/Tian2020MSA_v1.1/3T/Subcortex-Only/Tian_Subcortex_S2_3T_2009cAsym.nii.gz
2023-02-07 11:23:09,730 - JUNIFER - INFO - Storing in <SQLiteFeatureStorage @ ../../../junifer_storage/ID1000/ID1000 (multiple output)>
2023-02-07 11:23:09,793 - JUNIFER - WARNING - The number of columns is greater than 2000. The data will be stored in long format. This will make it slower to collect the data. Future versions of junifer will provide additional storage options that will not raise this warning.
2023-02-07 11:23:10,057 - JUNIFER - INFO - Fitting marker parccortical-Schaefer400x17FSLMNI_parcsubcortical-TianxS2x3TxMNInonlinear2009cAsym_marker-smoothedFC
2023-02-07 11:23:10,126 - JUNIFER - INFO - Computing BOLD
2023-02-07 11:23:11,668 - JUNIFER - INFO - Fetching one of Schaefer parcellations.
2023-02-07 11:23:11,668 - JUNIFER - INFO - Parcellation parameters:
2023-02-07 11:23:11,668 - JUNIFER - INFO - 	n_rois: 400
2023-02-07 11:23:11,668 - JUNIFER - INFO - 	yeo_networks: 17
2023-02-07 11:23:11,668 - JUNIFER - INFO - 	resolution: 3.0
2023-02-07 11:23:11,671 - JUNIFER - INFO - Loading parcellation /home/lsasse/junifer/data/parcellations/schaefer_2018/Schaefer2018_400Parcels_17Networks_order_FSLMNI152_2mm.nii.gz
2023-02-07 11:23:11,746 - JUNIFER - INFO - Fetching one of Tian parcellations.
2023-02-07 11:23:11,746 - JUNIFER - INFO - Parcellation parameters:
2023-02-07 11:23:11,746 - JUNIFER - INFO - 	scale: 2
2023-02-07 11:23:11,746 - JUNIFER - INFO - 	space: MNInonlinear2009cAsym
2023-02-07 11:23:11,746 - JUNIFER - INFO - 	magneticfield: 3T
2023-02-07 11:23:11,746 - JUNIFER - INFO - 	resolution: 3.0
2023-02-07 11:23:11,748 - JUNIFER - INFO - Loading parcellation /home/lsasse/junifer/data/parcellations/Tian2020MSA_v1.1/3T/Subcortex-Only/Tian_Subcortex_S2_3T_2009cAsym.nii.gz
2023-02-07 11:23:14,269 - JUNIFER - INFO - Storing in <SQLiteFeatureStorage @ ../../../junifer_storage/ID1000/ID1000 (multiple output)>
2023-02-07 11:23:14,357 - JUNIFER - WARNING - The number of columns is greater than 2000. The data will be stored in long format. This will make it slower to collect the data. Future versions of junifer will provide additional storage options that will not raise this warning.
2023-02-07 11:23:15,257 - JUNIFER - INFO - Fitting marker parccortical-Schaefer400x17MNI152NLin2009cAsym_parcsubcortical-TianxS2x3TxMNInonlinear2009cAsym_marker-empiricalFC
2023-02-07 11:23:15,310 - JUNIFER - INFO - Computing BOLD
2023-02-07 11:23:15,310 - JUNIFER - INFO - Loading parcellation /data/project/identification_prediction/data/aomic-fc_junifer-release/code/junifer_extensions/parcellations/data/tpl-MNI152NLin2009cAsym_res-02_atlas-Schaefer2018_desc-400Parcels17Networks_dseg.nii.gz
2023-02-07 11:23:15,381 - JUNIFER - INFO - Fetching one of Tian parcellations.
2023-02-07 11:23:15,381 - JUNIFER - INFO - Parcellation parameters:
2023-02-07 11:23:15,381 - JUNIFER - INFO - 	scale: 2
2023-02-07 11:23:15,381 - JUNIFER - INFO - 	space: MNInonlinear2009cAsym
2023-02-07 11:23:15,381 - JUNIFER - INFO - 	magneticfield: 3T
2023-02-07 11:23:15,381 - JUNIFER - INFO - 	resolution: 3.0
2023-02-07 11:23:15,383 - JUNIFER - INFO - Loading parcellation /home/lsasse/junifer/data/parcellations/Tian2020MSA_v1.1/3T/Subcortex-Only/Tian_Subcortex_S2_3T_2009cAsym.nii.gz
2023-02-07 11:23:17,868 - JUNIFER - INFO - Storing in <SQLiteFeatureStorage @ ../../../junifer_storage/ID1000/ID1000 (multiple output)>
2023-02-07 11:23:17,953 - JUNIFER - WARNING - The number of columns is greater than 2000. The data will be stored in long format. This will make it slower to collect the data. Future versions of junifer will provide additional storage options that will not raise this warning.
2023-02-07 11:23:18,851 - JUNIFER - INFO - Marker collection fitting done