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- Activating junifer_release
- Running junifer run /data/project/identification_prediction/data/aomic-fc_junifer-release/code/junifer_jobs/PREPROCESS_ID1000/config.yaml --verbose info --element 0686 in virtual environment
- 2023-02-07 11:16:00,995 - JUNIFER - INFO - ===== Lib Versions =====
- 2023-02-07 11:16:00,995 - JUNIFER - INFO - numpy: 1.23.5
- 2023-02-07 11:16:00,995 - JUNIFER - INFO - scipy: 1.10.0rc1
- 2023-02-07 11:16:00,995 - JUNIFER - INFO - pandas: 1.5.2
- 2023-02-07 11:16:00,995 - JUNIFER - INFO - nilearn: 0.9.2
- 2023-02-07 11:16:00,995 - JUNIFER - INFO - nibabel: 4.0.2
- 2023-02-07 11:16:00,995 - JUNIFER - INFO - junifer: 0.0.2.dev94
- 2023-02-07 11:16:00,995 - JUNIFER - INFO - ========================
- 2023-02-07 11:16:00,995 - JUNIFER - INFO - Parsing yaml file: /data/project/identification_prediction/data/aomic-fc_junifer-release/code/junifer_jobs/PREPROCESS_ID1000/config.yaml
- ================================================================================
- REGISTERING MY OWN PARCELLATION
- 2023-02-07 11:16:01,004 - JUNIFER - INFO - Fetching one of Schaefer parcellations.
- 2023-02-07 11:16:01,004 - JUNIFER - INFO - Parcellation parameters:
- 2023-02-07 11:16:01,004 - JUNIFER - INFO - n_rois: 100
- 2023-02-07 11:16:01,004 - JUNIFER - INFO - yeo_networks: 17
- 2023-02-07 11:16:01,004 - JUNIFER - INFO - resolution: 2
- 2023-02-07 11:16:01,007 - JUNIFER - INFO - Loading parcellation /home/lsasse/junifer/data/parcellations/schaefer_2018/Schaefer2018_100Parcels_17Networks_order_FSLMNI152_2mm.nii.gz
- 2023-02-07 11:16:01,055 - JUNIFER - INFO - Fetching one of Schaefer parcellations.
- 2023-02-07 11:16:01,055 - JUNIFER - INFO - Parcellation parameters:
- 2023-02-07 11:16:01,055 - JUNIFER - INFO - n_rois: 200
- 2023-02-07 11:16:01,055 - JUNIFER - INFO - yeo_networks: 17
- 2023-02-07 11:16:01,055 - JUNIFER - INFO - resolution: 2
- 2023-02-07 11:16:01,057 - JUNIFER - INFO - Loading parcellation /home/lsasse/junifer/data/parcellations/schaefer_2018/Schaefer2018_200Parcels_17Networks_order_FSLMNI152_2mm.nii.gz
- 2023-02-07 11:16:01,097 - JUNIFER - INFO - Fetching one of Schaefer parcellations.
- 2023-02-07 11:16:01,097 - JUNIFER - INFO - Parcellation parameters:
- 2023-02-07 11:16:01,097 - JUNIFER - INFO - n_rois: 400
- 2023-02-07 11:16:01,097 - JUNIFER - INFO - yeo_networks: 17
- 2023-02-07 11:16:01,097 - JUNIFER - INFO - resolution: 2
- 2023-02-07 11:16:01,099 - JUNIFER - INFO - Loading parcellation /home/lsasse/junifer/data/parcellations/schaefer_2018/Schaefer2018_400Parcels_17Networks_order_FSLMNI152_2mm.nii.gz
- ================================================================================
- 2023-02-07 11:16:01,140 - JUNIFER - INFO - Registering SmoothedFC in marker
- 2023-02-07 11:16:01,140 - JUNIFER - WARNING - `datadir` is None, creating a temporary directory
- 2023-02-07 11:16:01,141 - JUNIFER - INFO - `datadir` set to /var/lib/condor/execute/dir_468191/tmp2iygi0sl
- ================================================================================
- 6
- ================================================================================
- 2023-02-07 11:16:01,141 - JUNIFER - INFO - FWHM IS 6
- ================================================================================
- 6
- ================================================================================
- 2023-02-07 11:16:01,141 - JUNIFER - INFO - FWHM IS 6
- ================================================================================
- 6
- ================================================================================
- 2023-02-07 11:16:01,141 - JUNIFER - INFO - FWHM IS 6
- 2023-02-07 11:17:59,439 - JUNIFER - INFO - Getting element 0686
- 2023-02-07 11:20:56,167 - JUNIFER - INFO - Fitting pipeline
- 2023-02-07 11:20:56,167 - JUNIFER - INFO - Reading BOLD from /var/lib/condor/execute/dir_468191/tmp2iygi0sl/derivatives/fmriprep/sub-0686/func/sub-0686_task-moviewatching_space-MNI152NLin2009cAsym_desc-preproc_bold.nii.gz
- 2023-02-07 11:20:56,168 - JUNIFER - INFO - BOLD is type NIFTI
- 2023-02-07 11:20:56,169 - JUNIFER - INFO - Reading BOLD_confounds from /var/lib/condor/execute/dir_468191/tmp2iygi0sl/derivatives/fmriprep/sub-0686/func/sub-0686_task-moviewatching_desc-confounds_regressors.tsv
- 2023-02-07 11:20:56,169 - JUNIFER - INFO - BOLD_confounds is type TSV
- 2023-02-07 11:20:56,192 - JUNIFER - INFO - Reading BOLD_mask from /var/lib/condor/execute/dir_468191/tmp2iygi0sl/derivatives/fmriprep/sub-0686/func/sub-0686_task-moviewatching_space-MNI152NLin2009cAsym_desc-brain_mask.nii.gz
- 2023-02-07 11:20:56,192 - JUNIFER - INFO - BOLD_mask is type NIFTI
- 2023-02-07 11:20:56,193 - JUNIFER - INFO - Reading T1w from /var/lib/condor/execute/dir_468191/tmp2iygi0sl/derivatives/fmriprep/sub-0686/anat/sub-0686_space-MNI152NLin2009cAsym_desc-preproc_T1w.nii.gz
- 2023-02-07 11:20:56,193 - JUNIFER - INFO - T1w is type NIFTI
- 2023-02-07 11:20:56,194 - JUNIFER - INFO - Reading T1w_mask from /var/lib/condor/execute/dir_468191/tmp2iygi0sl/derivatives/fmriprep/sub-0686/anat/sub-0686_space-MNI152NLin2009cAsym_desc-brain_mask.nii.gz
- 2023-02-07 11:20:56,194 - JUNIFER - INFO - T1w_mask is type NIFTI
- 2023-02-07 11:20:56,195 - JUNIFER - INFO - Reading probseg_CSF from /var/lib/condor/execute/dir_468191/tmp2iygi0sl/derivatives/fmriprep/sub-0686/anat/sub-0686_space-MNI152NLin2009cAsym_label-CSF_probseg.nii.gz
- 2023-02-07 11:20:56,195 - JUNIFER - INFO - probseg_CSF is type NIFTI
- 2023-02-07 11:20:56,195 - JUNIFER - INFO - Reading probseg_GM from /var/lib/condor/execute/dir_468191/tmp2iygi0sl/derivatives/fmriprep/sub-0686/anat/sub-0686_space-MNI152NLin2009cAsym_label-GM_probseg.nii.gz
- 2023-02-07 11:20:56,195 - JUNIFER - INFO - probseg_GM is type NIFTI
- 2023-02-07 11:20:56,196 - JUNIFER - INFO - Reading probseg_WM from /var/lib/condor/execute/dir_468191/tmp2iygi0sl/derivatives/fmriprep/sub-0686/anat/sub-0686_space-MNI152NLin2009cAsym_label-WM_probseg.nii.gz
- 2023-02-07 11:20:56,196 - JUNIFER - INFO - probseg_WM is type NIFTI
- 2023-02-07 11:20:56,197 - JUNIFER - INFO - Reading DWI from /var/lib/condor/execute/dir_468191/tmp2iygi0sl/derivatives/dwipreproc/sub-0686/dwi/sub-0686_desc-preproc_dwi.nii.gz
- 2023-02-07 11:20:56,197 - JUNIFER - INFO - DWI is type NIFTI
- 2023-02-07 11:20:56,197 - JUNIFER - INFO - Preprocessing data
- 2023-02-07 11:20:56,197 - JUNIFER - INFO - Computing BOLD
- 2023-02-07 11:20:59,062 - JUNIFER - INFO - No `t_r` specified, using t_r from nifti header
- 2023-02-07 11:20:59,062 - JUNIFER - INFO - Read t_r from nifti header: 2.200000047683716
- 2023-02-07 11:20:59,355 - JUNIFER - INFO - Cleaning image
- 2023-02-07 11:21:06,235 - JUNIFER - INFO - Fitting marker parccortical-Schaefer100x17FSLMNI_parcsubcortical-TianxS2x3TxMNInonlinear2009cAsym_marker-empiricalFC
- 2023-02-07 11:21:06,274 - JUNIFER - INFO - Computing BOLD
- 2023-02-07 11:21:06,274 - JUNIFER - INFO - Fetching one of Schaefer parcellations.
- 2023-02-07 11:21:06,274 - JUNIFER - INFO - Parcellation parameters:
- 2023-02-07 11:21:06,274 - JUNIFER - INFO - n_rois: 100
- 2023-02-07 11:21:06,274 - JUNIFER - INFO - yeo_networks: 17
- 2023-02-07 11:21:06,274 - JUNIFER - INFO - resolution: 3.0
- 2023-02-07 11:21:06,277 - JUNIFER - INFO - Loading parcellation /home/lsasse/junifer/data/parcellations/schaefer_2018/Schaefer2018_100Parcels_17Networks_order_FSLMNI152_2mm.nii.gz
- 2023-02-07 11:21:06,348 - JUNIFER - INFO - Fetching one of Tian parcellations.
- 2023-02-07 11:21:06,348 - JUNIFER - INFO - Parcellation parameters:
- 2023-02-07 11:21:06,348 - JUNIFER - INFO - scale: 2
- 2023-02-07 11:21:06,348 - JUNIFER - INFO - space: MNInonlinear2009cAsym
- 2023-02-07 11:21:06,348 - JUNIFER - INFO - magneticfield: 3T
- 2023-02-07 11:21:06,348 - JUNIFER - INFO - resolution: 3.0
- 2023-02-07 11:21:06,350 - JUNIFER - INFO - Loading parcellation /home/lsasse/junifer/data/parcellations/Tian2020MSA_v1.1/3T/Subcortex-Only/Tian_Subcortex_S2_3T_2009cAsym.nii.gz
- 2023-02-07 11:21:08,268 - JUNIFER - INFO - Storing in <SQLiteFeatureStorage @ ../../../junifer_storage/ID1000/ID1000 (multiple output)>
- 2023-02-07 11:21:08,326 - JUNIFER - WARNING - The number of columns is greater than 2000. The data will be stored in long format. This will make it slower to collect the data. Future versions of junifer will provide additional storage options that will not raise this warning.
- 2023-02-07 11:21:08,415 - JUNIFER - INFO - Fitting marker parccortical-Schaefer200x17FSLMNI_parcsubcortical-TianxS2x3TxMNInonlinear2009cAsym_marker-empiricalFC
- 2023-02-07 11:21:08,451 - JUNIFER - INFO - Computing BOLD
- 2023-02-07 11:21:08,452 - JUNIFER - INFO - Fetching one of Schaefer parcellations.
- 2023-02-07 11:21:08,452 - JUNIFER - INFO - Parcellation parameters:
- 2023-02-07 11:21:08,452 - JUNIFER - INFO - n_rois: 200
- 2023-02-07 11:21:08,452 - JUNIFER - INFO - yeo_networks: 17
- 2023-02-07 11:21:08,452 - JUNIFER - INFO - resolution: 3.0
- 2023-02-07 11:21:08,455 - JUNIFER - INFO - Loading parcellation /home/lsasse/junifer/data/parcellations/schaefer_2018/Schaefer2018_200Parcels_17Networks_order_FSLMNI152_2mm.nii.gz
- 2023-02-07 11:21:08,531 - JUNIFER - INFO - Fetching one of Tian parcellations.
- 2023-02-07 11:21:08,531 - JUNIFER - INFO - Parcellation parameters:
- 2023-02-07 11:21:08,531 - JUNIFER - INFO - scale: 2
- 2023-02-07 11:21:08,531 - JUNIFER - INFO - space: MNInonlinear2009cAsym
- 2023-02-07 11:21:08,531 - JUNIFER - INFO - magneticfield: 3T
- 2023-02-07 11:21:08,531 - JUNIFER - INFO - resolution: 3.0
- 2023-02-07 11:21:08,533 - JUNIFER - INFO - Loading parcellation /home/lsasse/junifer/data/parcellations/Tian2020MSA_v1.1/3T/Subcortex-Only/Tian_Subcortex_S2_3T_2009cAsym.nii.gz
- 2023-02-07 11:21:10,497 - JUNIFER - INFO - Storing in <SQLiteFeatureStorage @ ../../../junifer_storage/ID1000/ID1000 (multiple output)>
- 2023-02-07 11:21:10,542 - JUNIFER - WARNING - The number of columns is greater than 2000. The data will be stored in long format. This will make it slower to collect the data. Future versions of junifer will provide additional storage options that will not raise this warning.
- 2023-02-07 11:21:10,769 - JUNIFER - INFO - Fitting marker parccortical-Schaefer400x17FSLMNI_parcsubcortical-TianxS2x3TxMNInonlinear2009cAsym_marker-empiricalFC
- 2023-02-07 11:21:10,806 - JUNIFER - INFO - Computing BOLD
- 2023-02-07 11:21:10,806 - JUNIFER - INFO - Fetching one of Schaefer parcellations.
- 2023-02-07 11:21:10,806 - JUNIFER - INFO - Parcellation parameters:
- 2023-02-07 11:21:10,806 - JUNIFER - INFO - n_rois: 400
- 2023-02-07 11:21:10,806 - JUNIFER - INFO - yeo_networks: 17
- 2023-02-07 11:21:10,806 - JUNIFER - INFO - resolution: 3.0
- 2023-02-07 11:21:10,810 - JUNIFER - INFO - Loading parcellation /home/lsasse/junifer/data/parcellations/schaefer_2018/Schaefer2018_400Parcels_17Networks_order_FSLMNI152_2mm.nii.gz
- 2023-02-07 11:21:10,881 - JUNIFER - INFO - Fetching one of Tian parcellations.
- 2023-02-07 11:21:10,881 - JUNIFER - INFO - Parcellation parameters:
- 2023-02-07 11:21:10,881 - JUNIFER - INFO - scale: 2
- 2023-02-07 11:21:10,881 - JUNIFER - INFO - space: MNInonlinear2009cAsym
- 2023-02-07 11:21:10,881 - JUNIFER - INFO - magneticfield: 3T
- 2023-02-07 11:21:10,881 - JUNIFER - INFO - resolution: 3.0
- 2023-02-07 11:21:10,882 - JUNIFER - INFO - Loading parcellation /home/lsasse/junifer/data/parcellations/Tian2020MSA_v1.1/3T/Subcortex-Only/Tian_Subcortex_S2_3T_2009cAsym.nii.gz
- 2023-02-07 11:21:12,964 - JUNIFER - INFO - Storing in <SQLiteFeatureStorage @ ../../../junifer_storage/ID1000/ID1000 (multiple output)>
- 2023-02-07 11:21:13,027 - JUNIFER - WARNING - The number of columns is greater than 2000. The data will be stored in long format. This will make it slower to collect the data. Future versions of junifer will provide additional storage options that will not raise this warning.
- 2023-02-07 11:21:13,685 - JUNIFER - INFO - Fitting marker parccortical-Schaefer100x17FSLMNI_parcsubcortical-TianxS2x3TxMNInonlinear2009cAsym_marker-smoothedFC
- 2023-02-07 11:21:13,716 - JUNIFER - INFO - Computing BOLD
- 2023-02-07 11:21:15,321 - JUNIFER - INFO - Fetching one of Schaefer parcellations.
- 2023-02-07 11:21:15,321 - JUNIFER - INFO - Parcellation parameters:
- 2023-02-07 11:21:15,321 - JUNIFER - INFO - n_rois: 100
- 2023-02-07 11:21:15,321 - JUNIFER - INFO - yeo_networks: 17
- 2023-02-07 11:21:15,321 - JUNIFER - INFO - resolution: 3.0
- 2023-02-07 11:21:15,323 - JUNIFER - INFO - Loading parcellation /home/lsasse/junifer/data/parcellations/schaefer_2018/Schaefer2018_100Parcels_17Networks_order_FSLMNI152_2mm.nii.gz
- 2023-02-07 11:21:15,395 - JUNIFER - INFO - Fetching one of Tian parcellations.
- 2023-02-07 11:21:15,395 - JUNIFER - INFO - Parcellation parameters:
- 2023-02-07 11:21:15,395 - JUNIFER - INFO - scale: 2
- 2023-02-07 11:21:15,395 - JUNIFER - INFO - space: MNInonlinear2009cAsym
- 2023-02-07 11:21:15,395 - JUNIFER - INFO - magneticfield: 3T
- 2023-02-07 11:21:15,395 - JUNIFER - INFO - resolution: 3.0
- 2023-02-07 11:21:15,396 - JUNIFER - INFO - Loading parcellation /home/lsasse/junifer/data/parcellations/Tian2020MSA_v1.1/3T/Subcortex-Only/Tian_Subcortex_S2_3T_2009cAsym.nii.gz
- 2023-02-07 11:21:17,212 - JUNIFER - INFO - Storing in <SQLiteFeatureStorage @ ../../../junifer_storage/ID1000/ID1000 (multiple output)>
- 2023-02-07 11:21:17,262 - JUNIFER - WARNING - The number of columns is greater than 2000. The data will be stored in long format. This will make it slower to collect the data. Future versions of junifer will provide additional storage options that will not raise this warning.
- 2023-02-07 11:21:17,364 - JUNIFER - INFO - Fitting marker parccortical-Schaefer200x17FSLMNI_parcsubcortical-TianxS2x3TxMNInonlinear2009cAsym_marker-smoothedFC
- 2023-02-07 11:21:17,401 - JUNIFER - INFO - Computing BOLD
- 2023-02-07 11:21:18,492 - JUNIFER - INFO - Fetching one of Schaefer parcellations.
- 2023-02-07 11:21:18,492 - JUNIFER - INFO - Parcellation parameters:
- 2023-02-07 11:21:18,492 - JUNIFER - INFO - n_rois: 200
- 2023-02-07 11:21:18,492 - JUNIFER - INFO - yeo_networks: 17
- 2023-02-07 11:21:18,492 - JUNIFER - INFO - resolution: 3.0
- 2023-02-07 11:21:18,494 - JUNIFER - INFO - Loading parcellation /home/lsasse/junifer/data/parcellations/schaefer_2018/Schaefer2018_200Parcels_17Networks_order_FSLMNI152_2mm.nii.gz
- 2023-02-07 11:21:18,571 - JUNIFER - INFO - Fetching one of Tian parcellations.
- 2023-02-07 11:21:18,571 - JUNIFER - INFO - Parcellation parameters:
- 2023-02-07 11:21:18,571 - JUNIFER - INFO - scale: 2
- 2023-02-07 11:21:18,571 - JUNIFER - INFO - space: MNInonlinear2009cAsym
- 2023-02-07 11:21:18,571 - JUNIFER - INFO - magneticfield: 3T
- 2023-02-07 11:21:18,571 - JUNIFER - INFO - resolution: 3.0
- 2023-02-07 11:21:18,572 - JUNIFER - INFO - Loading parcellation /home/lsasse/junifer/data/parcellations/Tian2020MSA_v1.1/3T/Subcortex-Only/Tian_Subcortex_S2_3T_2009cAsym.nii.gz
- 2023-02-07 11:21:20,565 - JUNIFER - INFO - Storing in <SQLiteFeatureStorage @ ../../../junifer_storage/ID1000/ID1000 (multiple output)>
- 2023-02-07 11:21:20,614 - JUNIFER - WARNING - The number of columns is greater than 2000. The data will be stored in long format. This will make it slower to collect the data. Future versions of junifer will provide additional storage options that will not raise this warning.
- 2023-02-07 11:21:20,814 - JUNIFER - INFO - Fitting marker parccortical-Schaefer400x17FSLMNI_parcsubcortical-TianxS2x3TxMNInonlinear2009cAsym_marker-smoothedFC
- 2023-02-07 11:21:20,848 - JUNIFER - INFO - Computing BOLD
- 2023-02-07 11:21:21,990 - JUNIFER - INFO - Fetching one of Schaefer parcellations.
- 2023-02-07 11:21:21,990 - JUNIFER - INFO - Parcellation parameters:
- 2023-02-07 11:21:21,990 - JUNIFER - INFO - n_rois: 400
- 2023-02-07 11:21:21,990 - JUNIFER - INFO - yeo_networks: 17
- 2023-02-07 11:21:21,990 - JUNIFER - INFO - resolution: 3.0
- 2023-02-07 11:21:21,992 - JUNIFER - INFO - Loading parcellation /home/lsasse/junifer/data/parcellations/schaefer_2018/Schaefer2018_400Parcels_17Networks_order_FSLMNI152_2mm.nii.gz
- 2023-02-07 11:21:22,063 - JUNIFER - INFO - Fetching one of Tian parcellations.
- 2023-02-07 11:21:22,063 - JUNIFER - INFO - Parcellation parameters:
- 2023-02-07 11:21:22,063 - JUNIFER - INFO - scale: 2
- 2023-02-07 11:21:22,063 - JUNIFER - INFO - space: MNInonlinear2009cAsym
- 2023-02-07 11:21:22,063 - JUNIFER - INFO - magneticfield: 3T
- 2023-02-07 11:21:22,063 - JUNIFER - INFO - resolution: 3.0
- 2023-02-07 11:21:22,065 - JUNIFER - INFO - Loading parcellation /home/lsasse/junifer/data/parcellations/Tian2020MSA_v1.1/3T/Subcortex-Only/Tian_Subcortex_S2_3T_2009cAsym.nii.gz
- 2023-02-07 11:21:24,189 - JUNIFER - INFO - Storing in <SQLiteFeatureStorage @ ../../../junifer_storage/ID1000/ID1000 (multiple output)>
- 2023-02-07 11:21:24,257 - JUNIFER - WARNING - The number of columns is greater than 2000. The data will be stored in long format. This will make it slower to collect the data. Future versions of junifer will provide additional storage options that will not raise this warning.
- 2023-02-07 11:21:24,925 - JUNIFER - INFO - Fitting marker parccortical-Schaefer400x17MNI152NLin2009cAsym_parcsubcortical-TianxS2x3TxMNInonlinear2009cAsym_marker-empiricalFC
- 2023-02-07 11:21:24,957 - JUNIFER - INFO - Computing BOLD
- 2023-02-07 11:21:24,957 - JUNIFER - INFO - Loading parcellation /data/project/identification_prediction/data/aomic-fc_junifer-release/code/junifer_extensions/parcellations/data/tpl-MNI152NLin2009cAsym_res-02_atlas-Schaefer2018_desc-400Parcels17Networks_dseg.nii.gz
- 2023-02-07 11:21:25,015 - JUNIFER - INFO - Fetching one of Tian parcellations.
- 2023-02-07 11:21:25,016 - JUNIFER - INFO - Parcellation parameters:
- 2023-02-07 11:21:25,016 - JUNIFER - INFO - scale: 2
- 2023-02-07 11:21:25,016 - JUNIFER - INFO - space: MNInonlinear2009cAsym
- 2023-02-07 11:21:25,016 - JUNIFER - INFO - magneticfield: 3T
- 2023-02-07 11:21:25,016 - JUNIFER - INFO - resolution: 3.0
- 2023-02-07 11:21:25,017 - JUNIFER - INFO - Loading parcellation /home/lsasse/junifer/data/parcellations/Tian2020MSA_v1.1/3T/Subcortex-Only/Tian_Subcortex_S2_3T_2009cAsym.nii.gz
- 2023-02-07 11:21:27,318 - JUNIFER - INFO - Storing in <SQLiteFeatureStorage @ ../../../junifer_storage/ID1000/ID1000 (multiple output)>
- 2023-02-07 11:21:27,383 - JUNIFER - WARNING - The number of columns is greater than 2000. The data will be stored in long format. This will make it slower to collect the data. Future versions of junifer will provide additional storage options that will not raise this warning.
- 2023-02-07 11:21:28,072 - JUNIFER - INFO - Marker collection fitting done
|