junifer_run_0568.err 3.0 KB

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  1. [INFO] Cloning dataset to Dataset(/var/lib/condor/execute/dir_3862925/tmpn3blojq8)
  2. [INFO] Attempting to clone from https://github.com/OpenNeuroDatasets/ds003097.git to /var/lib/condor/execute/dir_3862925/tmpn3blojq8
  3. [INFO] Start enumerating objects
  4. [INFO] Start receiving objects
  5. [INFO] Start resolving deltas
  6. [INFO] Completed clone attempts for Dataset(/var/lib/condor/execute/dir_3862925/tmpn3blojq8)
  7. [INFO] scanning for unlocked files (this may take some time)
  8. [INFO] Remote origin not usable by git-annex; setting annex-ignore
  9. [INFO] access to 1 dataset sibling s3-PRIVATE not auto-enabled, enable with:
  10. | datalad siblings -d "/var/lib/condor/execute/dir_3862925/tmpn3blojq8" enable -s s3-PRIVATE
  11. Traceback (most recent call last):
  12. File "/home/lsasse/miniconda3/envs/junifer_release/bin/junifer", line 8, in <module>
  13. sys.exit(cli())
  14. File "/home/lsasse/miniconda3/envs/junifer_release/lib/python3.10/site-packages/click/core.py", line 1130, in __call__
  15. return self.main(*args, **kwargs)
  16. File "/home/lsasse/miniconda3/envs/junifer_release/lib/python3.10/site-packages/click/core.py", line 1055, in main
  17. rv = self.invoke(ctx)
  18. File "/home/lsasse/miniconda3/envs/junifer_release/lib/python3.10/site-packages/click/core.py", line 1657, in invoke
  19. return _process_result(sub_ctx.command.invoke(sub_ctx))
  20. File "/home/lsasse/miniconda3/envs/junifer_release/lib/python3.10/site-packages/click/core.py", line 1404, in invoke
  21. return ctx.invoke(self.callback, **ctx.params)
  22. File "/home/lsasse/miniconda3/envs/junifer_release/lib/python3.10/site-packages/click/core.py", line 760, in invoke
  23. return __callback(*args, **kwargs)
  24. File "/data/project/identification_prediction/data/aomic-fc_junifer-release/envs/junifer/junifer/api/cli.py", line 119, in run
  25. api_run(
  26. File "/data/project/identification_prediction/data/aomic-fc_junifer-release/envs/junifer/junifer/api/functions.py", line 168, in run
  27. mc.fit(datagrabber_object[t_element])
  28. File "/data/project/identification_prediction/data/aomic-fc_junifer-release/envs/junifer/junifer/datagrabber/datalad_base.py", line 233, in __getitem__
  29. out = super().__getitem__(element)
  30. File "/data/project/identification_prediction/data/aomic-fc_junifer-release/envs/junifer/junifer/datagrabber/base.py", line 81, in __getitem__
  31. out = self.get_item(**named_element)
  32. File "/data/project/identification_prediction/data/aomic-fc_junifer-release/envs/junifer/junifer/datagrabber/aomic/id1000.py", line 119, in get_item
  33. out = super().get_item(subject=subject)
  34. File "/data/project/identification_prediction/data/aomic-fc_junifer-release/envs/junifer/junifer/datagrabber/pattern.py", line 199, in get_item
  35. raise_error(
  36. File "/data/project/identification_prediction/data/aomic-fc_junifer-release/envs/junifer/junifer/utils/logging.py", line 287, in raise_error
  37. raise klass(msg)
  38. ValueError: Cannot access BOLD for {'subject': '0568'}: File /var/lib/condor/execute/dir_3862925/tmpn3blojq8/derivatives/fmriprep/sub-0568/func/sub-0568_task-moviewatching_space-MNI152NLin2009cAsym_desc-preproc_bold.nii.gz does not exist