junifer_run_0047.err 3.5 KB

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  1. [INFO] Cloning dataset to Dataset(/var/lib/condor/execute/dir_3862870/tmprd6wc8mn)
  2. [INFO] Attempting to clone from https://github.com/OpenNeuroDatasets/ds003097.git to /var/lib/condor/execute/dir_3862870/tmprd6wc8mn
  3. [INFO] Start enumerating objects
  4. [INFO] Start receiving objects
  5. [INFO] Start resolving deltas
  6. [INFO] Completed clone attempts for Dataset(/var/lib/condor/execute/dir_3862870/tmprd6wc8mn)
  7. [INFO] scanning for unlocked files (this may take some time)
  8. [INFO] Remote origin not usable by git-annex; setting annex-ignore
  9. [INFO] access to 1 dataset sibling s3-PRIVATE not auto-enabled, enable with:
  10. | datalad siblings -d "/var/lib/condor/execute/dir_3862870/tmprd6wc8mn" enable -s s3-PRIVATE
  11. Traceback (most recent call last):
  12. File "/home/lsasse/miniconda3/envs/junifer_release/bin/junifer", line 8, in <module>
  13. sys.exit(cli())
  14. File "/home/lsasse/miniconda3/envs/junifer_release/lib/python3.10/site-packages/click/core.py", line 1130, in __call__
  15. return self.main(*args, **kwargs)
  16. File "/home/lsasse/miniconda3/envs/junifer_release/lib/python3.10/site-packages/click/core.py", line 1055, in main
  17. rv = self.invoke(ctx)
  18. File "/home/lsasse/miniconda3/envs/junifer_release/lib/python3.10/site-packages/click/core.py", line 1657, in invoke
  19. return _process_result(sub_ctx.command.invoke(sub_ctx))
  20. File "/home/lsasse/miniconda3/envs/junifer_release/lib/python3.10/site-packages/click/core.py", line 1404, in invoke
  21. return ctx.invoke(self.callback, **ctx.params)
  22. File "/home/lsasse/miniconda3/envs/junifer_release/lib/python3.10/site-packages/click/core.py", line 760, in invoke
  23. return __callback(*args, **kwargs)
  24. File "/data/project/identification_prediction/data/aomic-fc_junifer-release/envs/junifer/junifer/api/cli.py", line 119, in run
  25. api_run(
  26. File "/data/project/identification_prediction/data/aomic-fc_junifer-release/envs/junifer/junifer/api/functions.py", line 168, in run
  27. mc.fit(datagrabber_object[t_element])
  28. File "/data/project/identification_prediction/data/aomic-fc_junifer-release/envs/junifer/junifer/datagrabber/datalad_base.py", line 234, in __getitem__
  29. out = self._dataset_get(out)
  30. File "/data/project/identification_prediction/data/aomic-fc_junifer-release/envs/junifer/junifer/datagrabber/datalad_base.py", line 136, in _dataset_get
  31. dl_out = self._dataset.get(to_get, result_renderer="disabled")
  32. File "/home/lsasse/miniconda3/envs/junifer_release/lib/python3.10/site-packages/datalad/distribution/dataset.py", line 502, in apply_func
  33. return f(*args, **kwargs)
  34. File "/home/lsasse/miniconda3/envs/junifer_release/lib/python3.10/site-packages/datalad/interface/utils.py", line 340, in eval_func
  35. return return_func(*args, **kwargs)
  36. File "/home/lsasse/miniconda3/envs/junifer_release/lib/python3.10/site-packages/datalad/interface/utils.py", line 330, in return_func
  37. results = list(results)
  38. File "/home/lsasse/miniconda3/envs/junifer_release/lib/python3.10/site-packages/datalad/interface/utils.py", line 507, in _execute_command_
  39. raise IncompleteResultsError(
  40. datalad.support.exceptions.IncompleteResultsError: Command did not complete successfully. 1 failed:
  41. [{'action': 'get',
  42. 'annexkey': 'MD5E-s269001420--764a06f153d47cdeb8306e1a8ddad94b.nii.gz',
  43. 'message': 'not available; (Note that these git remotes have annex-ignore '
  44. 'set: origin)',
  45. 'path': '/var/lib/condor/execute/dir_3862870/tmprd6wc8mn/derivatives/dwipreproc/sub-0047/dwi/sub-0047_desc-preproc_dwi.nii.gz',
  46. 'refds': '/var/lib/condor/execute/dir_3862870/tmprd6wc8mn',
  47. 'status': 'error',
  48. 'type': 'file'}]