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- [INFO] Cloning dataset to Dataset(/var/lib/condor/execute/dir_3862870/tmprd6wc8mn)
- [INFO] Attempting to clone from https://github.com/OpenNeuroDatasets/ds003097.git to /var/lib/condor/execute/dir_3862870/tmprd6wc8mn
- [INFO] Start enumerating objects
- [INFO] Start receiving objects
- [INFO] Start resolving deltas
- [INFO] Completed clone attempts for Dataset(/var/lib/condor/execute/dir_3862870/tmprd6wc8mn)
- [INFO] scanning for unlocked files (this may take some time)
- [INFO] Remote origin not usable by git-annex; setting annex-ignore
- [INFO] access to 1 dataset sibling s3-PRIVATE not auto-enabled, enable with:
- | datalad siblings -d "/var/lib/condor/execute/dir_3862870/tmprd6wc8mn" enable -s s3-PRIVATE
- Traceback (most recent call last):
- File "/home/lsasse/miniconda3/envs/junifer_release/bin/junifer", line 8, in <module>
- sys.exit(cli())
- File "/home/lsasse/miniconda3/envs/junifer_release/lib/python3.10/site-packages/click/core.py", line 1130, in __call__
- return self.main(*args, **kwargs)
- File "/home/lsasse/miniconda3/envs/junifer_release/lib/python3.10/site-packages/click/core.py", line 1055, in main
- rv = self.invoke(ctx)
- File "/home/lsasse/miniconda3/envs/junifer_release/lib/python3.10/site-packages/click/core.py", line 1657, in invoke
- return _process_result(sub_ctx.command.invoke(sub_ctx))
- File "/home/lsasse/miniconda3/envs/junifer_release/lib/python3.10/site-packages/click/core.py", line 1404, in invoke
- return ctx.invoke(self.callback, **ctx.params)
- File "/home/lsasse/miniconda3/envs/junifer_release/lib/python3.10/site-packages/click/core.py", line 760, in invoke
- return __callback(*args, **kwargs)
- File "/data/project/identification_prediction/data/aomic-fc_junifer-release/envs/junifer/junifer/api/cli.py", line 119, in run
- api_run(
- File "/data/project/identification_prediction/data/aomic-fc_junifer-release/envs/junifer/junifer/api/functions.py", line 168, in run
- mc.fit(datagrabber_object[t_element])
- File "/data/project/identification_prediction/data/aomic-fc_junifer-release/envs/junifer/junifer/datagrabber/datalad_base.py", line 234, in __getitem__
- out = self._dataset_get(out)
- File "/data/project/identification_prediction/data/aomic-fc_junifer-release/envs/junifer/junifer/datagrabber/datalad_base.py", line 136, in _dataset_get
- dl_out = self._dataset.get(to_get, result_renderer="disabled")
- File "/home/lsasse/miniconda3/envs/junifer_release/lib/python3.10/site-packages/datalad/distribution/dataset.py", line 502, in apply_func
- return f(*args, **kwargs)
- File "/home/lsasse/miniconda3/envs/junifer_release/lib/python3.10/site-packages/datalad/interface/utils.py", line 340, in eval_func
- return return_func(*args, **kwargs)
- File "/home/lsasse/miniconda3/envs/junifer_release/lib/python3.10/site-packages/datalad/interface/utils.py", line 330, in return_func
- results = list(results)
- File "/home/lsasse/miniconda3/envs/junifer_release/lib/python3.10/site-packages/datalad/interface/utils.py", line 507, in _execute_command_
- raise IncompleteResultsError(
- datalad.support.exceptions.IncompleteResultsError: Command did not complete successfully. 1 failed:
- [{'action': 'get',
- 'annexkey': 'MD5E-s269001420--764a06f153d47cdeb8306e1a8ddad94b.nii.gz',
- 'message': 'not available; (Note that these git remotes have annex-ignore '
- 'set: origin)',
- 'path': '/var/lib/condor/execute/dir_3862870/tmprd6wc8mn/derivatives/dwipreproc/sub-0047/dwi/sub-0047_desc-preproc_dwi.nii.gz',
- 'refds': '/var/lib/condor/execute/dir_3862870/tmprd6wc8mn',
- 'status': 'error',
- 'type': 'file'}]
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