aomic-fc/code/junifer_jobs/PREPROCESS_ID1000/config.yaml

datagrabber:
  kind: DataladAOMICID1000
markers:
- cor_method: correlation
  cor_method_params:
    empirical: true
  kind: FunctionalConnectivityParcels
  masks:
  - inherit
  name: parccortical-Schaefer100x17FSLMNI_parcsubcortical-TianxS2x3TxMNInonlinear2009cAsym_marker-empiricalFC
  parcellation:
  - Schaefer100x17
  - TianxS2x3TxMNInonlinear2009cAsym
- cor_method: correlation
  cor_method_params:
    empirical: true
  kind: FunctionalConnectivityParcels
  masks:
  - inherit
  name: parccortical-Schaefer200x17FSLMNI_parcsubcortical-TianxS2x3TxMNInonlinear2009cAsym_marker-empiricalFC
  parcellation:
  - Schaefer200x17
  - TianxS2x3TxMNInonlinear2009cAsym
- cor_method: correlation
  cor_method_params:
    empirical: true
  kind: FunctionalConnectivityParcels
  masks:
  - inherit
  name: parccortical-Schaefer400x17FSLMNI_parcsubcortical-TianxS2x3TxMNInonlinear2009cAsym_marker-empiricalFC
  parcellation:
  - Schaefer400x17
  - TianxS2x3TxMNInonlinear2009cAsym
- cor_method: correlation
  cor_method_params:
    empirical: true
  fwhm: 6
  kind: SmoothedFC
  masks:
  - inherit
  name: parccortical-Schaefer100x17FSLMNI_parcsubcortical-TianxS2x3TxMNInonlinear2009cAsym_marker-smoothedFC
  parcellation:
  - Schaefer100x17
  - TianxS2x3TxMNInonlinear2009cAsym
- cor_method: correlation
  cor_method_params:
    empirical: true
  fwhm: 6
  kind: SmoothedFC
  masks:
  - inherit
  name: parccortical-Schaefer200x17FSLMNI_parcsubcortical-TianxS2x3TxMNInonlinear2009cAsym_marker-smoothedFC
  parcellation:
  - Schaefer200x17
  - TianxS2x3TxMNInonlinear2009cAsym
- cor_method: correlation
  cor_method_params:
    empirical: true
  fwhm: 6
  kind: SmoothedFC
  masks:
  - inherit
  name: parccortical-Schaefer400x17FSLMNI_parcsubcortical-TianxS2x3TxMNInonlinear2009cAsym_marker-smoothedFC
  parcellation:
  - Schaefer400x17
  - TianxS2x3TxMNInonlinear2009cAsym
- cor_method: correlation
  cor_method_params:
    empirical: true
  kind: FunctionalConnectivityParcels
  masks:
  - inherit
  name: parccortical-Schaefer400x17MNI152NLin2009cAsym_parcsubcortical-TianxS2x3TxMNInonlinear2009cAsym_marker-empiricalFC
  parcellation:
  - Schaefer400x17_MNI152NLin2009cAsym
  - TianxS2x3TxMNInonlinear2009cAsym
preprocess:
  detrend: true
  high_pass: 0.01
  kind: fMRIPrepConfoundRemover
  low_pass: 0.08
  masks:
  - inherit
  - compute_epi_mask
  - threshold: 0
  standardize: true
  strategy:
    global_signal: full
    motion: full
    wm_csf: full
storage:
  kind: SQLiteFeatureStorage
  uri: ../../../junifer_storage/ID1000/ID1000
with:
- 02_register_templateflow_schaefer_parcs.py
- smoothed_fc.py
workdir: /tmp