Activating junifer_release Running junifer run /data/project/identification_prediction/data/aomic-fc_junifer-release/code/junifer_jobs/PREPROCESS_ID1000/config.yaml --verbose info --element 0921 in virtual environment 2023-02-07 11:01:13,199 - JUNIFER - INFO - ===== Lib Versions ===== 2023-02-07 11:01:13,199 - JUNIFER - INFO - numpy: 1.23.5 2023-02-07 11:01:13,199 - JUNIFER - INFO - scipy: 1.10.0rc1 2023-02-07 11:01:13,199 - JUNIFER - INFO - pandas: 1.5.2 2023-02-07 11:01:13,199 - JUNIFER - INFO - nilearn: 0.9.2 2023-02-07 11:01:13,199 - JUNIFER - INFO - nibabel: 4.0.2 2023-02-07 11:01:13,199 - JUNIFER - INFO - junifer: 0.0.2.dev94 2023-02-07 11:01:13,199 - JUNIFER - INFO - ======================== 2023-02-07 11:01:13,199 - JUNIFER - INFO - Parsing yaml file: /data/project/identification_prediction/data/aomic-fc_junifer-release/code/junifer_jobs/PREPROCESS_ID1000/config.yaml ================================================================================ REGISTERING MY OWN PARCELLATION 2023-02-07 11:01:13,212 - JUNIFER - INFO - Fetching one of Schaefer parcellations. 2023-02-07 11:01:13,212 - JUNIFER - INFO - Parcellation parameters: 2023-02-07 11:01:13,212 - JUNIFER - INFO - n_rois: 100 2023-02-07 11:01:13,212 - JUNIFER - INFO - yeo_networks: 17 2023-02-07 11:01:13,212 - JUNIFER - INFO - resolution: 2 2023-02-07 11:01:13,216 - JUNIFER - INFO - Loading parcellation /home/lsasse/junifer/data/parcellations/schaefer_2018/Schaefer2018_100Parcels_17Networks_order_FSLMNI152_2mm.nii.gz 2023-02-07 11:01:13,259 - JUNIFER - INFO - Fetching one of Schaefer parcellations. 2023-02-07 11:01:13,259 - JUNIFER - INFO - Parcellation parameters: 2023-02-07 11:01:13,259 - JUNIFER - INFO - n_rois: 200 2023-02-07 11:01:13,259 - JUNIFER - INFO - yeo_networks: 17 2023-02-07 11:01:13,259 - JUNIFER - INFO - resolution: 2 2023-02-07 11:01:13,262 - JUNIFER - INFO - Loading parcellation /home/lsasse/junifer/data/parcellations/schaefer_2018/Schaefer2018_200Parcels_17Networks_order_FSLMNI152_2mm.nii.gz 2023-02-07 11:01:13,304 - JUNIFER - INFO - Fetching one of Schaefer parcellations. 2023-02-07 11:01:13,304 - JUNIFER - INFO - Parcellation parameters: 2023-02-07 11:01:13,305 - JUNIFER - INFO - n_rois: 400 2023-02-07 11:01:13,305 - JUNIFER - INFO - yeo_networks: 17 2023-02-07 11:01:13,305 - JUNIFER - INFO - resolution: 2 2023-02-07 11:01:13,307 - JUNIFER - INFO - Loading parcellation /home/lsasse/junifer/data/parcellations/schaefer_2018/Schaefer2018_400Parcels_17Networks_order_FSLMNI152_2mm.nii.gz ================================================================================ 2023-02-07 11:01:13,352 - JUNIFER - INFO - Registering SmoothedFC in marker 2023-02-07 11:01:13,352 - JUNIFER - WARNING - `datadir` is None, creating a temporary directory 2023-02-07 11:01:13,353 - JUNIFER - INFO - `datadir` set to /var/lib/condor/execute/dir_1231170/tmpb_z7q5v3 ================================================================================ 6 ================================================================================ 2023-02-07 11:01:13,353 - JUNIFER - INFO - FWHM IS 6 ================================================================================ 6 ================================================================================ 2023-02-07 11:01:13,353 - JUNIFER - INFO - FWHM IS 6 ================================================================================ 6 ================================================================================ 2023-02-07 11:01:13,353 - JUNIFER - INFO - FWHM IS 6 2023-02-07 11:02:57,844 - JUNIFER - INFO - Getting element 0921 2023-02-07 11:04:23,225 - JUNIFER - INFO - Fitting pipeline 2023-02-07 11:04:23,225 - JUNIFER - INFO - Reading BOLD from /var/lib/condor/execute/dir_1231170/tmpb_z7q5v3/derivatives/fmriprep/sub-0921/func/sub-0921_task-moviewatching_space-MNI152NLin2009cAsym_desc-preproc_bold.nii.gz 2023-02-07 11:04:23,225 - JUNIFER - INFO - BOLD is type NIFTI 2023-02-07 11:04:23,228 - JUNIFER - INFO - Reading BOLD_confounds from /var/lib/condor/execute/dir_1231170/tmpb_z7q5v3/derivatives/fmriprep/sub-0921/func/sub-0921_task-moviewatching_desc-confounds_regressors.tsv 2023-02-07 11:04:23,228 - JUNIFER - INFO - BOLD_confounds is type TSV 2023-02-07 11:04:23,248 - JUNIFER - INFO - Reading BOLD_mask from /var/lib/condor/execute/dir_1231170/tmpb_z7q5v3/derivatives/fmriprep/sub-0921/func/sub-0921_task-moviewatching_space-MNI152NLin2009cAsym_desc-brain_mask.nii.gz 2023-02-07 11:04:23,248 - JUNIFER - INFO - BOLD_mask is type NIFTI 2023-02-07 11:04:23,249 - JUNIFER - INFO - Reading T1w from /var/lib/condor/execute/dir_1231170/tmpb_z7q5v3/derivatives/fmriprep/sub-0921/anat/sub-0921_space-MNI152NLin2009cAsym_desc-preproc_T1w.nii.gz 2023-02-07 11:04:23,250 - JUNIFER - INFO - T1w is type NIFTI 2023-02-07 11:04:23,251 - JUNIFER - INFO - Reading T1w_mask from /var/lib/condor/execute/dir_1231170/tmpb_z7q5v3/derivatives/fmriprep/sub-0921/anat/sub-0921_space-MNI152NLin2009cAsym_desc-brain_mask.nii.gz 2023-02-07 11:04:23,251 - JUNIFER - INFO - T1w_mask is type NIFTI 2023-02-07 11:04:23,253 - JUNIFER - INFO - Reading probseg_CSF from /var/lib/condor/execute/dir_1231170/tmpb_z7q5v3/derivatives/fmriprep/sub-0921/anat/sub-0921_space-MNI152NLin2009cAsym_label-CSF_probseg.nii.gz 2023-02-07 11:04:23,253 - JUNIFER - INFO - probseg_CSF is type NIFTI 2023-02-07 11:04:23,254 - JUNIFER - INFO - Reading probseg_GM from /var/lib/condor/execute/dir_1231170/tmpb_z7q5v3/derivatives/fmriprep/sub-0921/anat/sub-0921_space-MNI152NLin2009cAsym_label-GM_probseg.nii.gz 2023-02-07 11:04:23,255 - JUNIFER - INFO - probseg_GM is type NIFTI 2023-02-07 11:04:23,256 - JUNIFER - INFO - Reading probseg_WM from /var/lib/condor/execute/dir_1231170/tmpb_z7q5v3/derivatives/fmriprep/sub-0921/anat/sub-0921_space-MNI152NLin2009cAsym_label-WM_probseg.nii.gz 2023-02-07 11:04:23,256 - JUNIFER - INFO - probseg_WM is type NIFTI 2023-02-07 11:04:23,258 - JUNIFER - INFO - Reading DWI from /var/lib/condor/execute/dir_1231170/tmpb_z7q5v3/derivatives/dwipreproc/sub-0921/dwi/sub-0921_desc-preproc_dwi.nii.gz 2023-02-07 11:04:23,258 - JUNIFER - INFO - DWI is type NIFTI 2023-02-07 11:04:23,259 - JUNIFER - INFO - Preprocessing data 2023-02-07 11:04:23,259 - JUNIFER - INFO - Computing BOLD 2023-02-07 11:04:25,797 - JUNIFER - INFO - No `t_r` specified, using t_r from nifti header 2023-02-07 11:04:25,797 - JUNIFER - INFO - Read t_r from nifti header: 2.200000047683716 2023-02-07 11:04:26,113 - JUNIFER - INFO - Cleaning image 2023-02-07 11:04:36,772 - JUNIFER - INFO - Fitting marker parccortical-Schaefer100x17FSLMNI_parcsubcortical-TianxS2x3TxMNInonlinear2009cAsym_marker-empiricalFC 2023-02-07 11:04:36,891 - JUNIFER - INFO - Computing BOLD 2023-02-07 11:04:36,892 - JUNIFER - INFO - Fetching one of Schaefer parcellations. 2023-02-07 11:04:36,892 - JUNIFER - INFO - Parcellation parameters: 2023-02-07 11:04:36,892 - JUNIFER - INFO - n_rois: 100 2023-02-07 11:04:36,892 - JUNIFER - INFO - yeo_networks: 17 2023-02-07 11:04:36,892 - JUNIFER - INFO - resolution: 3.0 2023-02-07 11:04:36,895 - JUNIFER - INFO - Loading parcellation /home/lsasse/junifer/data/parcellations/schaefer_2018/Schaefer2018_100Parcels_17Networks_order_FSLMNI152_2mm.nii.gz 2023-02-07 11:04:36,972 - JUNIFER - INFO - Fetching one of Tian parcellations. 2023-02-07 11:04:36,972 - JUNIFER - INFO - Parcellation parameters: 2023-02-07 11:04:36,972 - JUNIFER - INFO - scale: 2 2023-02-07 11:04:36,972 - JUNIFER - INFO - space: MNInonlinear2009cAsym 2023-02-07 11:04:36,972 - JUNIFER - INFO - magneticfield: 3T 2023-02-07 11:04:36,972 - JUNIFER - INFO - resolution: 3.0 2023-02-07 11:04:36,975 - JUNIFER - INFO - Loading parcellation /home/lsasse/junifer/data/parcellations/Tian2020MSA_v1.1/3T/Subcortex-Only/Tian_Subcortex_S2_3T_2009cAsym.nii.gz 2023-02-07 11:04:39,147 - JUNIFER - INFO - Storing in 2023-02-07 11:04:39,207 - JUNIFER - WARNING - The number of columns is greater than 2000. The data will be stored in long format. This will make it slower to collect the data. Future versions of junifer will provide additional storage options that will not raise this warning. 2023-02-07 11:04:39,313 - JUNIFER - INFO - Fitting marker parccortical-Schaefer200x17FSLMNI_parcsubcortical-TianxS2x3TxMNInonlinear2009cAsym_marker-empiricalFC 2023-02-07 11:04:39,363 - JUNIFER - INFO - Computing BOLD 2023-02-07 11:04:39,364 - JUNIFER - INFO - Fetching one of Schaefer parcellations. 2023-02-07 11:04:39,364 - JUNIFER - INFO - Parcellation parameters: 2023-02-07 11:04:39,364 - JUNIFER - INFO - n_rois: 200 2023-02-07 11:04:39,364 - JUNIFER - INFO - yeo_networks: 17 2023-02-07 11:04:39,364 - JUNIFER - INFO - resolution: 3.0 2023-02-07 11:04:39,369 - JUNIFER - INFO - Loading parcellation /home/lsasse/junifer/data/parcellations/schaefer_2018/Schaefer2018_200Parcels_17Networks_order_FSLMNI152_2mm.nii.gz 2023-02-07 11:04:39,445 - JUNIFER - INFO - Fetching one of Tian parcellations. 2023-02-07 11:04:39,445 - JUNIFER - INFO - Parcellation parameters: 2023-02-07 11:04:39,445 - JUNIFER - INFO - scale: 2 2023-02-07 11:04:39,445 - JUNIFER - INFO - space: MNInonlinear2009cAsym 2023-02-07 11:04:39,445 - JUNIFER - INFO - magneticfield: 3T 2023-02-07 11:04:39,445 - JUNIFER - INFO - resolution: 3.0 2023-02-07 11:04:39,447 - JUNIFER - INFO - Loading parcellation /home/lsasse/junifer/data/parcellations/Tian2020MSA_v1.1/3T/Subcortex-Only/Tian_Subcortex_S2_3T_2009cAsym.nii.gz 2023-02-07 11:04:41,648 - JUNIFER - INFO - Storing in 2023-02-07 11:04:41,707 - JUNIFER - WARNING - The number of columns is greater than 2000. The data will be stored in long format. This will make it slower to collect the data. Future versions of junifer will provide additional storage options that will not raise this warning. 2023-02-07 11:04:41,952 - JUNIFER - INFO - Fitting marker parccortical-Schaefer400x17FSLMNI_parcsubcortical-TianxS2x3TxMNInonlinear2009cAsym_marker-empiricalFC 2023-02-07 11:04:42,021 - JUNIFER - INFO - Computing BOLD 2023-02-07 11:04:42,022 - JUNIFER - INFO - Fetching one of Schaefer parcellations. 2023-02-07 11:04:42,022 - JUNIFER - INFO - Parcellation parameters: 2023-02-07 11:04:42,022 - JUNIFER - INFO - n_rois: 400 2023-02-07 11:04:42,022 - JUNIFER - INFO - yeo_networks: 17 2023-02-07 11:04:42,022 - JUNIFER - INFO - resolution: 3.0 2023-02-07 11:04:42,025 - JUNIFER - INFO - Loading parcellation /home/lsasse/junifer/data/parcellations/schaefer_2018/Schaefer2018_400Parcels_17Networks_order_FSLMNI152_2mm.nii.gz 2023-02-07 11:04:42,110 - JUNIFER - INFO - Fetching one of Tian parcellations. 2023-02-07 11:04:42,110 - JUNIFER - INFO - Parcellation parameters: 2023-02-07 11:04:42,110 - JUNIFER - INFO - scale: 2 2023-02-07 11:04:42,110 - JUNIFER - INFO - space: MNInonlinear2009cAsym 2023-02-07 11:04:42,110 - JUNIFER - INFO - magneticfield: 3T 2023-02-07 11:04:42,110 - JUNIFER - INFO - resolution: 3.0 2023-02-07 11:04:42,112 - JUNIFER - INFO - Loading parcellation /home/lsasse/junifer/data/parcellations/Tian2020MSA_v1.1/3T/Subcortex-Only/Tian_Subcortex_S2_3T_2009cAsym.nii.gz 2023-02-07 11:04:44,369 - JUNIFER - INFO - Storing in 2023-02-07 11:04:44,444 - JUNIFER - WARNING - The number of columns is greater than 2000. The data will be stored in long format. This will make it slower to collect the data. Future versions of junifer will provide additional storage options that will not raise this warning. 2023-02-07 11:04:45,229 - JUNIFER - INFO - Fitting marker parccortical-Schaefer100x17FSLMNI_parcsubcortical-TianxS2x3TxMNInonlinear2009cAsym_marker-smoothedFC 2023-02-07 11:04:45,277 - JUNIFER - INFO - Computing BOLD 2023-02-07 11:04:47,278 - JUNIFER - INFO - Fetching one of Schaefer parcellations. 2023-02-07 11:04:47,278 - JUNIFER - INFO - Parcellation parameters: 2023-02-07 11:04:47,278 - JUNIFER - INFO - n_rois: 100 2023-02-07 11:04:47,278 - JUNIFER - INFO - yeo_networks: 17 2023-02-07 11:04:47,279 - JUNIFER - INFO - resolution: 3.0 2023-02-07 11:04:47,281 - JUNIFER - INFO - Loading parcellation /home/lsasse/junifer/data/parcellations/schaefer_2018/Schaefer2018_100Parcels_17Networks_order_FSLMNI152_2mm.nii.gz 2023-02-07 11:04:47,360 - JUNIFER - INFO - Fetching one of Tian parcellations. 2023-02-07 11:04:47,360 - JUNIFER - INFO - Parcellation parameters: 2023-02-07 11:04:47,360 - JUNIFER - INFO - scale: 2 2023-02-07 11:04:47,360 - JUNIFER - INFO - space: MNInonlinear2009cAsym 2023-02-07 11:04:47,360 - JUNIFER - INFO - magneticfield: 3T 2023-02-07 11:04:47,360 - JUNIFER - INFO - resolution: 3.0 2023-02-07 11:04:47,362 - JUNIFER - INFO - Loading parcellation /home/lsasse/junifer/data/parcellations/Tian2020MSA_v1.1/3T/Subcortex-Only/Tian_Subcortex_S2_3T_2009cAsym.nii.gz 2023-02-07 11:04:49,467 - JUNIFER - INFO - Storing in 2023-02-07 11:04:49,519 - JUNIFER - WARNING - The number of columns is greater than 2000. The data will be stored in long format. This will make it slower to collect the data. Future versions of junifer will provide additional storage options that will not raise this warning. 2023-02-07 11:04:49,623 - JUNIFER - INFO - Fitting marker parccortical-Schaefer200x17FSLMNI_parcsubcortical-TianxS2x3TxMNInonlinear2009cAsym_marker-smoothedFC 2023-02-07 11:04:49,685 - JUNIFER - INFO - Computing BOLD 2023-02-07 11:04:51,332 - JUNIFER - INFO - Fetching one of Schaefer parcellations. 2023-02-07 11:04:51,333 - JUNIFER - INFO - Parcellation parameters: 2023-02-07 11:04:51,333 - JUNIFER - INFO - n_rois: 200 2023-02-07 11:04:51,333 - JUNIFER - INFO - yeo_networks: 17 2023-02-07 11:04:51,333 - JUNIFER - INFO - resolution: 3.0 2023-02-07 11:04:51,335 - JUNIFER - INFO - Loading parcellation /home/lsasse/junifer/data/parcellations/schaefer_2018/Schaefer2018_200Parcels_17Networks_order_FSLMNI152_2mm.nii.gz 2023-02-07 11:04:51,421 - JUNIFER - INFO - Fetching one of Tian parcellations. 2023-02-07 11:04:51,421 - JUNIFER - INFO - Parcellation parameters: 2023-02-07 11:04:51,421 - JUNIFER - INFO - scale: 2 2023-02-07 11:04:51,421 - JUNIFER - INFO - space: MNInonlinear2009cAsym 2023-02-07 11:04:51,421 - JUNIFER - INFO - magneticfield: 3T 2023-02-07 11:04:51,422 - JUNIFER - INFO - resolution: 3.0 2023-02-07 11:04:51,423 - JUNIFER - INFO - Loading parcellation /home/lsasse/junifer/data/parcellations/Tian2020MSA_v1.1/3T/Subcortex-Only/Tian_Subcortex_S2_3T_2009cAsym.nii.gz 2023-02-07 11:04:53,687 - JUNIFER - INFO - Storing in 2023-02-07 11:04:53,749 - JUNIFER - WARNING - The number of columns is greater than 2000. The data will be stored in long format. This will make it slower to collect the data. Future versions of junifer will provide additional storage options that will not raise this warning. 2023-02-07 11:04:54,000 - JUNIFER - INFO - Fitting marker parccortical-Schaefer400x17FSLMNI_parcsubcortical-TianxS2x3TxMNInonlinear2009cAsym_marker-smoothedFC 2023-02-07 11:04:54,055 - JUNIFER - INFO - Computing BOLD 2023-02-07 11:04:55,575 - JUNIFER - INFO - Fetching one of Schaefer parcellations. 2023-02-07 11:04:55,575 - JUNIFER - INFO - Parcellation parameters: 2023-02-07 11:04:55,575 - JUNIFER - INFO - n_rois: 400 2023-02-07 11:04:55,575 - JUNIFER - INFO - yeo_networks: 17 2023-02-07 11:04:55,575 - JUNIFER - INFO - resolution: 3.0 2023-02-07 11:04:55,578 - JUNIFER - INFO - Loading parcellation /home/lsasse/junifer/data/parcellations/schaefer_2018/Schaefer2018_400Parcels_17Networks_order_FSLMNI152_2mm.nii.gz 2023-02-07 11:04:55,659 - JUNIFER - INFO - Fetching one of Tian parcellations. 2023-02-07 11:04:55,659 - JUNIFER - INFO - Parcellation parameters: 2023-02-07 11:04:55,659 - JUNIFER - INFO - scale: 2 2023-02-07 11:04:55,659 - JUNIFER - INFO - space: MNInonlinear2009cAsym 2023-02-07 11:04:55,659 - JUNIFER - INFO - magneticfield: 3T 2023-02-07 11:04:55,659 - JUNIFER - INFO - resolution: 3.0 2023-02-07 11:04:55,662 - JUNIFER - INFO - Loading parcellation /home/lsasse/junifer/data/parcellations/Tian2020MSA_v1.1/3T/Subcortex-Only/Tian_Subcortex_S2_3T_2009cAsym.nii.gz 2023-02-07 11:04:58,033 - JUNIFER - INFO - Storing in 2023-02-07 11:04:58,116 - JUNIFER - WARNING - The number of columns is greater than 2000. The data will be stored in long format. This will make it slower to collect the data. Future versions of junifer will provide additional storage options that will not raise this warning. 2023-02-07 11:04:58,879 - JUNIFER - INFO - Fitting marker parccortical-Schaefer400x17MNI152NLin2009cAsym_parcsubcortical-TianxS2x3TxMNInonlinear2009cAsym_marker-empiricalFC 2023-02-07 11:04:58,940 - JUNIFER - INFO - Computing BOLD 2023-02-07 11:04:58,941 - JUNIFER - INFO - Loading parcellation /data/project/identification_prediction/data/aomic-fc_junifer-release/code/junifer_extensions/parcellations/data/tpl-MNI152NLin2009cAsym_res-02_atlas-Schaefer2018_desc-400Parcels17Networks_dseg.nii.gz 2023-02-07 11:04:59,006 - JUNIFER - INFO - Fetching one of Tian parcellations. 2023-02-07 11:04:59,006 - JUNIFER - INFO - Parcellation parameters: 2023-02-07 11:04:59,006 - JUNIFER - INFO - scale: 2 2023-02-07 11:04:59,006 - JUNIFER - INFO - space: MNInonlinear2009cAsym 2023-02-07 11:04:59,006 - JUNIFER - INFO - magneticfield: 3T 2023-02-07 11:04:59,006 - JUNIFER - INFO - resolution: 3.0 2023-02-07 11:04:59,008 - JUNIFER - INFO - Loading parcellation /home/lsasse/junifer/data/parcellations/Tian2020MSA_v1.1/3T/Subcortex-Only/Tian_Subcortex_S2_3T_2009cAsym.nii.gz 2023-02-07 11:05:01,329 - JUNIFER - INFO - Storing in 2023-02-07 11:05:01,410 - JUNIFER - WARNING - The number of columns is greater than 2000. The data will be stored in long format. This will make it slower to collect the data. Future versions of junifer will provide additional storage options that will not raise this warning. 2023-02-07 11:05:02,196 - JUNIFER - INFO - Marker collection fitting done