lettersim-ot-rsa/03_get_neural_rdms.py

# -*- coding: utf-8 -*-

# %% general setup

# import libraries
import os
import os.path as op
from string import ascii_lowercase
import re

import numpy as np
# import scipy
import pandas as pd

import mne
import rsatoolbox

import matplotlib.pyplot as plt
import matplotlib as mpl
from mpl_toolkits.axes_grid1 import make_axes_locatable

fig_font_size = 8

plt.rcParams.update({
    "font.family": "Helvetica",
    'font.size': fig_font_size
})

# from tqdm import tqdm

beh_path = op.join('beh', 'data')
eeg_path = 'eeg'
epo_path = 'epo'

# get list of all subject IDs from behavioural file names
plist = pd.read_csv(op.join('eeg', 'participants.tsv'), delimiter='\t')
plist = plist.loc[plist.recording_restarted == 0]

all_subj_ids = plist.participant_id

# the list used to order the similarity matrices
chars = [*ascii_lowercase, 'ä', 'ö', 'ü', 'ß']

# %% import all data

# get all participants' data
all_epos = [mne.read_epochs(os.path.join(epo_path, f'{subj_id}-epo.fif')) for subj_id in all_subj_ids]

# remove non-eeg channels
all_epos = [e.pick(['eeg']) for e in all_epos]

# for each participant get an array with all stimulus IDs
all_epo_labs = [np.array(e.metadata.stimulus) for e in all_epos]

# list of all posterior electrodes
post_chs = ['TP9', 'TP7', 'CP5', 'CP3', 'CP1', 'CPz', 'CP2', 'CP4', 'CP6', 'TP8', 'TP10',
            'P7', 'P5', 'P3', 'P1', 'Pz', 'P2', 'P4', 'P6', 'P8',
            'PO7', 'PO3', 'POz', 'PO4', 'PO8',
            'PO9', 'O1', 'Oz', 'O2', 'PO10']

epos_concat = mne.concatenate_epochs(all_epos)

# %%
# for illustration

fig = epos_concat.average().plot(picks = post_chs, time_unit='ms', highlight=(150, 225), show=False);
fig.set_size_inches(2.4, 0.75)
fig.savefig(op.join('fig', 'ERP.svg'))
plt.close()

eg_chars = chars

# plot the patterns for one participant
eg_participant_idx = 1

# for scaling the colour bar
min_avg = np.min([all_epos[eg_participant_idx][c].get_data(picks=post_chs, tmin=.150, tmax=.225).mean(axis=(0,2)) for c in eg_chars])
max_avg = np.max([all_epos[eg_participant_idx][c].get_data(picks=post_chs, tmin=.150, tmax=.225).mean(axis=(0,2)) for c in eg_chars])

abs_max = max([abs(min_avg), abs(max_avg)])

n_chs = len(all_epos[0].info['ch_names'])

rdbu_cmap = mpl.colormaps['RdBu_r']

cb_fig, ax = plt.subplots(figsize=(1.7, .075), layout='constrained')

cb_fig.colorbar(mpl.cm.ScalarMappable(
    norm=mpl.colors.Normalize(vmin=-abs_max * 1e6, vmax=abs_max * 1e6),
    cmap=rdbu_cmap),
        cax=ax, orientation='horizontal', label='µV',
        # ticks=[-3,-2,-1,0,1,2,3]
        ticks=[-8,-4,0,4,8]
        )

cb_fig.savefig(op.join('fig', 'pattern_examples', 'colorbar.svg'), bbox_inches='tight', pad_inches=0)
plt.close()

for c in eg_chars:
    epo_dat = all_epos[eg_participant_idx][c].get_data(picks='eeg', tmin=.150, tmax=.225)
    epo_avg_per_ch = epo_dat.mean(axis = (0,2))

    # ch_grps = [ch if epos_concat.info['ch_names'][ch] in post_chs
    #            else np.nan
    #            for ch in range(len(epos_concat.info['ch_names']))]

    ch_grps = [[i] for i in range(n_chs)]

    ch_vals = np.array([epo_avg_per_ch[i] for i in range(n_chs)])
    
    ch_vals_scaled = (ch_vals + abs_max) / (abs_max*2)

    cmap_custom = mpl.colors.ListedColormap([rdbu_cmap(x) for x in ch_vals_scaled])
    # twilight.set_bad('white', 0)

    point_sizes = [125 if epos_concat.info.ch_names[i] in post_chs else 0 for i in range(n_chs)]

    ch_epo_fig = mne.viz.plot_sensors(epos_concat.info, ch_groups=ch_grps, cmap=cmap_custom, pointsize=point_sizes, linewidth=0)

    ch_epo_fig.set_size_inches((2, 2))
    ch_epo_fig.savefig(op.join('fig', 'pattern_examples', f'{c}.svg'), bbox_inches='tight', pad_inches=0)
    plt.close()

# illustrate correlation distance RDMs for all participants
eg_rdms = []
for p in range(len(all_epos)):
    vecs = [all_epos[p][c].get_data(picks='eeg', tmin=.150, tmax=.225).mean(axis = (0,2)) for c in chars]
    eg_rdm = np.zeros((len(chars), len(chars)))
    for i in range(len(chars)):
        for j in range(len(chars)):
            eg_rdm[i, j] = 1 - np.corrcoef(x=vecs[i], y=vecs[j])[0, 1]
    eg_rdms.append(eg_rdm)

rank_eg_rdms = []
for p in range(len(all_epos)):
    eg_rdm = eg_rdms[p]
    eg_rdm_tril = eg_rdm[np.tril_indices(n=eg_rdm.shape[0], k=-1)]
    eg_rdm_tril_rank = eg_rdm_tril.argsort().argsort() + 1
    rank_eg_rdm = np.zeros((len(chars), len(chars)))
    rank_eg_rdm[np.tril_indices(n=eg_rdm.shape[0], k=-1)] = eg_rdm_tril_rank
    rank_eg_rdm[np.triu_indices(n=eg_rdm.shape[0], k=0)] = rank_eg_rdm.T[np.triu_indices(n=eg_rdm.shape[0], k=0)]
    rank_eg_rdm[np.diag_indices(n=rank_eg_rdm.shape[0])] = np.nan
    rank_eg_rdms.append(rank_eg_rdm)

rdm_cmap = 'viridis'

for p in range(len(all_epos)):
    eg_rdm = eg_rdms[p]

    fig, ax = plt.subplots(1, 1, figsize=(.5, .5))
    plt.imshow(eg_rdm, interpolation='none', cmap=rdm_cmap)
    # plt.imshow(eg_rdm, interpolation='none', cmap=rdm_cmap, vmin=0, vmax=2)
    ax.set_xticks([])
    ax.set_yticks([])

    fig.savefig(op.join('fig', 'rdm_examples', f'rdm_{p}.svg'), bbox_inches='tight', pad_inches=0)
    plt.close()

    rank_eg_rdm = rank_eg_rdms[p]

    fig, ax = plt.subplots(1, 1, figsize=(.5, .5))
    plt.imshow(rank_eg_rdm, interpolation='none', cmap=rdm_cmap, vmin=1, vmax=435)
    ax.set_xticks([])
    ax.set_yticks([])

    fig.savefig(op.join('fig', 'rank_rdm_examples', f'rank_rdm_{p}.svg'), bbox_inches='tight', pad_inches=0)
    plt.close()


cb_fig, ax = plt.subplots(figsize=(0.5, .075), layout='constrained')

cb_fig.colorbar(mpl.cm.ScalarMappable(
    norm=mpl.colors.Normalize(vmin=0, vmax=2),
    cmap=rdm_cmap),
        cax=ax, orientation='horizontal', label='1-r',
        # ticks=[-3,-2,-1,0,1,2,3]
        ticks=[]
        )

cb_fig.savefig(op.join('fig', 'rdm_examples', 'colorbar.svg'), bbox_inches='tight', pad_inches=0)
plt.close()

cb_fig, ax = plt.subplots(figsize=(0.5, .075), layout='constrained')

cb_fig.colorbar(mpl.cm.ScalarMappable(
    norm=mpl.colors.Normalize(vmin=1, vmax=435),
    cmap=rdm_cmap),
        cax=ax, orientation='horizontal', label='Rank',
        ticks=[]
        )

cb_fig.savefig(op.join('fig', 'rank_rdm_examples', 'colorbar.svg'), bbox_inches='tight', pad_inches=0)
plt.close()

# %% RSA toolbox method

r_comb_ot = []
r_comb_jacc = []
r_comb_complexity = []
r_comb_ot_poi = []
r_comb_jacc_poi = []

rdms_data_list = []
rdms_data_poi_list = []
rdms_data_p1_list = []

rdms_data_list_all_chs = []
rdms_data_poi_list_all_chs = []
rdms_data_p1_list_all_chs = []

sim_path = 'stim_sim'

# sim_path_jacc = op.join(sim_path, 'jacc')
# sim_path_ot = op.join(sim_path, 'ot')

sim_path_prereg = op.join(sim_path, 'preregistered')

jacc_dissim_mat = np.load(op.join(sim_path_prereg, 'jacc.npy'))
jacc_vec = jacc_dissim_mat[np.tril_indices(jacc_dissim_mat.shape[0], k=-1)]

jacc_mod = rsatoolbox.rdm.RDMs(
            dissimilarities = jacc_dissim_mat[np.newaxis, :, :],
            dissimilarity_measure = 'jaccard',
            descriptors = {
                'index': np.arange(len(chars)),
                'stimulus': chars
            }
        )

ot_dissim_mat = np.load(op.join(sim_path_prereg, 'ot.npy'))
ot_vec = ot_dissim_mat[np.tril_indices(ot_dissim_mat.shape[0], k=-1)]

ot_mod = rsatoolbox.rdm.RDMs(
            dissimilarities = ot_dissim_mat[np.newaxis, :, :],
            dissimilarity_measure = 'optimal transport',
            descriptors = {
                'index': np.arange(len(chars)),
                'stimulus': chars
            }
        )

sim_path_complexity = op.join(sim_path, 'complexity')
complexity_dissim_mat = np.load(op.join(sim_path_complexity, 'complexity.npy'))
complexity_vec = complexity_dissim_mat[np.tril_indices(complexity_dissim_mat.shape[0], k=-1)]

complexity_mod = rsatoolbox.rdm.RDMs(
            dissimilarities = complexity_dissim_mat[np.newaxis, :, :],
            dissimilarity_measure = 'complexity',
            descriptors = {
                'index': np.arange(len(chars)),
                'stimulus': chars
            }
        )

out_path = 'rdm_data'

n1_period = [0.15, 0.225]
p1_period = [0.080, 0.130]

for s, subj_id in enumerate(all_subj_ids):

    print(f'Participant {subj_id} ({s+1}/{len(all_subj_ids)})')

    epo = all_epos[s].pick('eeg')
    # epo = all_epos[s]
    epo_labs = all_epo_labs[s]

    # get the similarities for the period of interest
    epo_poi = epo.copy().get_data(picks = post_chs, tmin=n1_period[0], tmax=n1_period[1])

    # reshape into n_obs * n_chs
    epo_poi_resh = np.zeros((epo_poi.shape[0] * epo_poi.shape[2], epo_poi.shape[1]))

    epo_labs_resh = np.repeat(epo_labs, epo_poi.shape[2])

    for ch in range(epo_poi.shape[1]):
        # for each channel, get data from all timepoints for epoch 1, then for epoch 2, epoch 3, etc.
        epo_poi_resh[:, ch] = epo_poi[:, ch, :].flatten()

    data_poi = rsatoolbox.data.Dataset(
        epo_poi_resh,
        channel_descriptors={'names': epo.copy().pick(post_chs).info['ch_names']},
        obs_descriptors={'stimulus': epo_labs_resh}
    )

    # get the equivalent for all EEG channels (not just the posterior region)
    epo_poi_all_chs = epo.copy().get_data(picks = 'eeg', tmin=n1_period[0], tmax=n1_period[1])
    epo_poi_all_chs_resh = np.zeros((epo_poi_all_chs.shape[0] * epo_poi_all_chs.shape[2], epo_poi_all_chs.shape[1]))

    for ch in range(epo_poi_all_chs.shape[1]):
        epo_poi_all_chs_resh[:, ch] = epo_poi_all_chs[:, ch, :].flatten()

    data_poi_all_chs = rsatoolbox.data.Dataset(
        epo_poi_all_chs_resh,
        channel_descriptors={'names': epo.info['ch_names']},
        obs_descriptors={'stimulus': epo_labs_resh}  # can reuse this as N trials doesn't change
    )

    # get the similarities for the exploratory P1 period
    epo_p1 = epo.copy().get_data(picks = post_chs, tmin=p1_period[0], tmax=p1_period[1])

    # reshape into n_obs * n_chs
    epo_p1_resh = np.zeros((epo_p1.shape[0] * epo_p1.shape[2], epo_p1.shape[1]))

    epo_labs_resh_p1 = np.repeat(epo_labs, epo_p1.shape[2])

    for ch in range(epo_p1.shape[1]):
        # for each channel, get data from all timepoints for epoch 1, then for epoch 2, epoch 3, etc.
        epo_p1_resh[:, ch] = epo_p1[:, ch, :].flatten()

    data_p1 = rsatoolbox.data.Dataset(
        epo_p1_resh,
        channel_descriptors={'names': epo.copy().pick(post_chs).info['ch_names']},
        obs_descriptors={'stimulus': epo_labs_resh_p1}
    )

    # calculate RDMs and Rs

    rdms_data_poi = rsatoolbox.rdm.calc_rdm(data_poi, method='correlation', descriptor='stimulus')

    rdms_data_poi_all_chs = rsatoolbox.rdm.calc_rdm(data_poi_all_chs, method='correlation', descriptor='stimulus')

    rdms_data_p1 = rsatoolbox.rdm.calc_rdm(data_p1, method='correlation', descriptor='stimulus')

    jacc_r_poi = rsatoolbox.rdm.compare(jacc_mod, rdms_data_poi, method='rho-a')
    ot_r_poi = rsatoolbox.rdm.compare(ot_mod, rdms_data_poi, method='rho-a')

    jacc_r_p1 = rsatoolbox.rdm.compare(jacc_mod, rdms_data_p1, method='rho-a')
    ot_r_p1 = rsatoolbox.rdm.compare(ot_mod, rdms_data_p1, method='rho-a')

    r_comb_ot_poi.append(ot_r_poi)
    r_comb_jacc_poi.append(jacc_r_poi)

    # save to csv for later model
    mat_poi = rdms_data_poi.get_matrices().squeeze()
    vec_poi = mat_poi[np.tril_indices(mat_poi.shape[0], k=-1)]

    char1_ids = np.array(chars)[np.tril_indices(jacc_dissim_mat.shape[0], k=-1)[0]]
    char2_ids = np.array(chars)[np.tril_indices(jacc_dissim_mat.shape[0], k=-1)[1]]

    poi_df = pd.DataFrame({
        'subj_id': subj_id,
        'char1': char1_ids,
        'char2': char2_ids,
        # 'ot_dist': ot_vec,
        # 'jacc_dissim': jacc_vec,
        'eeg_dissim': vec_poi
    })

    poi_data_filepath = op.join(out_path, 'period_of_interest', f'{subj_id}.csv')
    poi_df.to_csv(poi_data_filepath, index=False)

    # also save the results for all channels
    mat_poi_all_chs = rdms_data_poi_all_chs.get_matrices().squeeze()
    vec_poi_all_chs = mat_poi_all_chs[np.tril_indices(mat_poi_all_chs.shape[0], k=-1)]

    char1_ids = np.array(chars)[np.tril_indices(jacc_dissim_mat.shape[0], k=-1)[0]]
    char2_ids = np.array(chars)[np.tril_indices(jacc_dissim_mat.shape[0], k=-1)[1]]

    poi_all_chs_df = pd.DataFrame({
        'subj_id': subj_id,
        'char1': char1_ids,
        'char2': char2_ids,
        # 'ot_dist': ot_vec,
        # 'jacc_dissim': jacc_vec,
        'eeg_dissim': vec_poi_all_chs
    })

    poi_data_all_chs_filepath = op.join(out_path, 'period_of_interest_all_chs', f'{subj_id}.csv')
    poi_all_chs_df.to_csv(poi_data_all_chs_filepath, index=False)

    # also save the P1 results
    mat_p1 = rdms_data_p1.get_matrices().squeeze()
    vec_p1 = mat_p1[np.tril_indices(mat_p1.shape[0], k=-1)]

    char1_ids = np.array(chars)[np.tril_indices(jacc_dissim_mat.shape[0], k=-1)[0]]
    char2_ids = np.array(chars)[np.tril_indices(jacc_dissim_mat.shape[0], k=-1)[1]]

    p1_df = pd.DataFrame({
        'subj_id': subj_id,
        'char1': char1_ids,
        'char2': char2_ids,
        # 'ot_dist': ot_vec,
        # 'jacc_dissim': jacc_vec,
        'eeg_dissim': vec_p1
    })

    p1_data_filepath = op.join(out_path, 'p1_period', f'{subj_id}.csv')
    p1_df.to_csv(p1_data_filepath, index=False)

    
    # get the time resolved results

    data = rsatoolbox.data.TemporalDataset(
        epo.copy().get_data(picks = post_chs),
        channel_descriptors={'names': post_chs},
        obs_descriptors={'stimulus': epo_labs},
        time_descriptors={'time': epo.times}
    )

    # bins with bin_len time points per bin (first sample, in baseline, will have bin_len+1 time points, because of odd number)
    # at 1000 ms, samples and ms are equivalent, so bins are bin_len ms wide
    # bin_len = 4
    bin_len=10
    times_binned = np.array_split(epo.times, len(epo.times)/bin_len)

    # rdms_data = rsatoolbox.rdm.calc_rdm_movie(data, method='correlation', descriptor='stimulus', bins=times_binned, noise=noise_prec_shrink)
    rdms_data = rsatoolbox.rdm.calc_rdm_movie(data, method='correlation', descriptor='stimulus', bins=times_binned)
    
    jacc_r = rsatoolbox.rdm.compare(jacc_mod, rdms_data, method='rho-a')
    
    ot_r = rsatoolbox.rdm.compare(ot_mod, rdms_data, method='rho-a')

    complexity_r = rsatoolbox.rdm.compare(complexity_mod, rdms_data, method='rho-a')

    # save to csv for later model
    mats_per_tp = list(rdms_data.get_matrices())
    vecs_per_tp = [x[np.tril_indices(x.shape[0], k=-1)] for x in mats_per_tp]

    tp_dfs = [pd.DataFrame({
        'subj_id': subj_id,
        'char1': char1_ids,
        'char2': char2_ids,
        'time': t,
        # 'ot_dist': ot_vec,
        # 'jacc_dissim': jacc_vec,
        'eeg_dissim': vecs_per_tp[i]
    }) for i, t in enumerate(rdms_data.rdm_descriptors['time'])]

    subj_df = pd.concat(tp_dfs)
    rdm_data_filepath = op.join(out_path, 'time_resolved', f'{subj_id}.csv')
    subj_df.to_csv(rdm_data_filepath, index=False)

    # also save time-resolved data for all channels
    data_all_chs = rsatoolbox.data.TemporalDataset(
        epo.copy().get_data(picks = 'eeg'),
        channel_descriptors={'names': epo.info['ch_names']},
        obs_descriptors={'stimulus': epo_labs},
        time_descriptors={'time': epo.times}
    )

    rdms_data_all_chs = rsatoolbox.rdm.calc_rdm_movie(data_all_chs, method='correlation', descriptor='stimulus', bins=times_binned)

    mats_per_tp_all_chs = list(rdms_data_all_chs.get_matrices())
    vecs_per_tp_all_chs = [x[np.tril_indices(x.shape[0], k=-1)] for x in mats_per_tp_all_chs]

    tp_dfs_all_chs = [pd.DataFrame({
        'subj_id': subj_id,
        'char1': char1_ids,
        'char2': char2_ids,
        'time': t,
        'eeg_dissim': vecs_per_tp_all_chs[i]
    }) for i, t in enumerate(rdms_data_all_chs.rdm_descriptors['time'])]

    subj_df_all_chs = pd.concat(tp_dfs_all_chs)
    rdm_data_all_chs_filepath = op.join(out_path, 'time_resolved_all_chs', f'{subj_id}.csv')
    subj_df_all_chs.to_csv(rdm_data_all_chs_filepath, index=False)

    # # get Rs
    # r = [scipy.stats.spearmanr(jacc_vec, x).statistic for x in vecs_per_tp]

    # Spearman's Rho
    r_comb_ot.append(ot_r)

    r_comb_jacc.append(jacc_r)

    r_comb_complexity.append(complexity_r)

    rdms_data_list.append(rdms_data)
    rdms_data_poi_list.append(rdms_data_poi)
    rdms_data_p1_list.append(rdms_data_p1)

    rdms_data_list_all_chs.append(rdms_data_all_chs)
    rdms_data_poi_list_all_chs.append(rdms_data_poi_all_chs)


# calculate noise ceiling with average of per-participant leave-one-out cross-validation and full-set comparison
rdms_data_poi_concat = rsatoolbox.rdm.concat(rdms_data_poi_list)
nc = rsatoolbox.inference.noise_ceiling.boot_noise_ceiling(rdms_data_poi_concat, method='rho-a', rdm_descriptor='index')  # index descriptor will specify participants
nc_df = pd.DataFrame({'lwr': [nc[0]], 'upr': [nc[1]]})

# calculate P1 noise ceiling
rdms_data_p1_concat = rsatoolbox.rdm.concat(rdms_data_p1_list)
nc_p1 = rsatoolbox.inference.noise_ceiling.boot_noise_ceiling(rdms_data_p1_concat, method='rho-a', rdm_descriptor='index')  # index descriptor will specify participants
nc_p1_df = pd.DataFrame({'lwr': [nc_p1[0]], 'upr': [nc_p1[1]]})

# calculate POI noise ceiling for all channels
rdms_data_poi_all_chs_concat = rsatoolbox.rdm.concat(rdms_data_poi_list_all_chs)
nc_poi_all_chs = rsatoolbox.inference.noise_ceiling.boot_noise_ceiling(rdms_data_poi_all_chs_concat, method='rho-a', rdm_descriptor='index')  # index descriptor will specify participants
nc_all_chs_df = pd.DataFrame({'lwr': [nc_poi_all_chs[0]], 'upr': [nc_poi_all_chs[1]]})

rdms_by_time = [rsatoolbox.rdm.concat([rdms_s.subset('index', i)
                                       for rdms_s in rdms_data_list])
                 for i in range(len(times_binned))]

nc_time = np.array([rsatoolbox.inference.noise_ceiling.boot_noise_ceiling(x, method='rho-a', rdm_descriptor='index') for x in rdms_by_time])
nc_df_time = pd.DataFrame({'time': rdms_data.rdm_descriptors['time'], 'lwr': nc_time[:, 0], 'upr': nc_time[:, 1]})

rdms_all_chs_by_time = [rsatoolbox.rdm.concat([rdms_s.subset('index', i)
                                            for rdms_s in rdms_data_list_all_chs])
                        for i in range(len(times_binned))]

nc_all_chs_time = np.array([rsatoolbox.inference.noise_ceiling.boot_noise_ceiling(x, method='rho-a', rdm_descriptor='index') for x in rdms_all_chs_by_time])
nc_all_chs_df_time = pd.DataFrame({'time': rdms_data_all_chs.rdm_descriptors['time'], 'lwr': nc_all_chs_time[:, 0], 'upr': nc_all_chs_time[:, 1]})

nc_df.to_csv(op.join('noise_ceiling', 'noise_ceiling_poi.csv'), index=False)
nc_p1_df.to_csv(op.join('noise_ceiling', 'noise_ceiling_p1.csv'), index=False)
nc_df_time.to_csv(op.join('noise_ceiling', 'noise_ceiling_time.csv'), index=False)

nc_all_chs_df.to_csv(op.join('noise_ceiling', 'noise_ceiling_poi_all_chs.csv'), index=False)
nc_all_chs_df_time.to_csv(op.join('noise_ceiling', 'noise_ceiling_time_all_chs.csv'), index=False)

# plt.plot(np.array([np.mean(x) for x in times_binned]), nc_time)
# plt.fill_between(np.array([np.mean(x) for x in times_binned]), nc_time[:, 0], nc_time[:, 1], facecolor='lightgrey')

Rs_ot = np.array(r_comb_ot).squeeze()
Rs_jacc = np.array(r_comb_jacc).squeeze()
Rs_complexity = np.array(r_comb_complexity).squeeze()

print('AVERAGE ESTIMATES')
print(f'Jaccard POI Rho: {np.array(r_comb_jacc_poi).squeeze().mean()}')
print(f'Optimal Transport POI Rho: {np.array(r_comb_ot_poi).squeeze().mean()}')

# %%
# quick figures

# save images of the channel locations

# load the first epochs file
tmp_epo = mne.read_epochs(os.path.join(epo_path, f'{str(all_subj_ids[0]).zfill(3)}-epo.fif'))

# get a list of all channels not in the posterior ROI
non_post_chs = [x['ch_name'] for x in tmp_epo.info['chs'] if (~np.isin(x['ch_name'], post_chs)) & (x['kind']==2)]

# get a list of lists containing indices for the plot colours
ch_groups = [[tmp_epo.ch_names.index(ch) for ch in g] for g in [non_post_chs, post_chs]]

# plot ROI in red, and all other channels in black
ch_pl = mne.viz.plot_sensors(tmp_epo.info, ch_groups=ch_groups, cmap = mpl.colors.ListedColormap(['black', 'red']), linewidth=0, pointsize=50, show_names=False, show=False)

# set the figure size
ch_pl.set_size_inches(2, 2)

# edit the width of the lines for the head
for line in ch_pl.axes[0].lines:
    line.set_linewidth(2)

# explort as pdf
ch_pl.savefig(os.path.join('fig', 'channels.pdf'), bbox_inches='tight', pad_inches=0)
plt.close()