Metadata-Version: 2.1 Name: neo Version: 0.9.0 Summary: Neo is a package for representing electrophysiology data in Python, together with support for reading a wide range of neurophysiology file formats Home-page: https://neuralensemble.org/neo Author: Neo authors and contributors Author-email: samuel.garcia@cnrs.fr License: BSD-3-Clause Description: === Neo === Neo is a Python package for working with electrophysiology data in Python, together with support for reading a wide range of neurophysiology file formats, including Spike2, NeuroExplorer, AlphaOmega, Axon, Blackrock, Plexon, Tdt, and support for writing to a subset of these formats plus non-proprietary formats including HDF5. The goal of Neo is to improve interoperability between Python tools for analyzing, visualizing and generating electrophysiology data by providing a common, shared object model. In order to be as lightweight a dependency as possible, Neo is deliberately limited to represention of data, with no functions for data analysis or visualization. Neo is used by a number of other software tools, including SpykeViewer_ (data analysis and visualization), Elephant_ (data analysis), the G-node_ suite (databasing), PyNN_ (simulations), tridesclous_ (spike sorting) and ephyviewer_ (data visualization). OpenElectrophy_ (data analysis and visualization) uses an older version of neo. Neo implements a hierarchical data model well adapted to intracellular and extracellular electrophysiology and EEG data with support for multi-electrodes (for example tetrodes). Neo's data objects build on the quantities package, which in turn builds on NumPy by adding support for physical dimensions. Thus Neo objects behave just like normal NumPy arrays, but with additional metadata, checks for dimensional consistency and automatic unit conversion. A project with similar aims but for neuroimaging file formats is `NiBabel`_. Code status ----------- .. image:: https://travis-ci.org/NeuralEnsemble/python-neo.png?branch=master :target: https://travis-ci.org/NeuralEnsemble/python-neo :alt: Unit Test Status (TravisCI) .. image:: https://circleci.com/gh/NeuralEnsemble/python-neo.svg?style=svg :target: https://circleci.com/gh/NeuralEnsemble/python-neo :alt: Unit Test Status (CircleCI) .. image:: https://coveralls.io/repos/NeuralEnsemble/python-neo/badge.png :target: https://coveralls.io/r/NeuralEnsemble/python-neo :alt: Unit Test Coverage .. image:: https://requires.io/github/NeuralEnsemble/python-neo/requirements.png?branch=master :target: https://requires.io/github/NeuralEnsemble/python-neo/requirements/?branch=master :alt: Requirements Status More information ---------------- - Home page: http://neuralensemble.org/neo - Mailing list: https://groups.google.com/forum/?fromgroups#!forum/neuralensemble - Documentation: http://neo.readthedocs.io/ - Bug reports: https://github.com/NeuralEnsemble/python-neo/issues For installation instructions, see doc/source/install.rst To cite Neo in publications, see CITATION.txt :copyright: Copyright 2010-2020 by the Neo team, see doc/source/authors.rst. :license: 3-Clause Revised BSD License, see LICENSE.txt for details. Funding ------- Development of PyNN has been partially funded by the European Union Sixth Framework Program (FP6) under grant agreement FETPI-015879 (FACETS), by the European Union Seventh Framework Program (FP7/2007­-2013) under grant agreements no. 269921 (BrainScaleS) and no. 604102 (HBP), and by the European Union’s Horizon 2020 Framework Programme for Research and Innovation under the Specific Grant Agreements No. 720270 (Human Brain Project SGA1), No. 785907 (Human Brain Project SGA2) and No. 945539 (Human Brain Project SGA3). .. _OpenElectrophy: https://github.com/OpenElectrophy/OpenElectrophy .. _Elephant: http://neuralensemble.org/elephant .. _G-node: http://www.g-node.org/ .. _Neuroshare: http://neuroshare.org/ .. _SpykeViewer: https://spyke-viewer.readthedocs.org/en/latest/ .. _NiBabel: http://nipy.sourceforge.net/nibabel/ .. _PyNN: http://neuralensemble.org/PyNN .. _quantities: http://pypi.python.org/pypi/quantities .. _`NeuralEnsemble mailing list`: http://groups.google.com/group/neuralensemble .. _`issue tracker`: https://github.c .. _tridesclous: https://github.com/tridesclous/tridesclous .. _ephyviewer: https://github.com/NeuralEnsemble/ephyviewer Platform: UNKNOWN Classifier: Development Status :: 4 - Beta Classifier: Intended Audience :: Science/Research Classifier: License :: OSI Approved :: BSD License Classifier: Natural Language :: English Classifier: Operating System :: OS Independent Classifier: Programming Language :: Python :: 3 Classifier: Programming Language :: Python :: 3.6 Classifier: Programming Language :: Python :: 3.7 Classifier: Programming Language :: Python :: 3.8 Classifier: Programming Language :: Python :: 3 :: Only Classifier: Topic :: Scientific/Engineering Requires-Python: >=3.6 Provides-Extra: tiffio Provides-Extra: hdf5io Provides-Extra: neomatlabio Provides-Extra: kwikio Provides-Extra: igorproio Provides-Extra: stimfitio Provides-Extra: nixio