8c5c5847-d361-4816-93b4-0e7c212931cf 0.1 Jeff Teeters 2020-02-10

d269e4ee-a1f7-4790-996c-794f748850d4 Experiment Experiment Metadata about the experiment session fbcbefa8-7b1e-4701-a149-e06e92d46c76 species Mus musculus Species. Examples: Mus musculus, Rattus norvegicus string b2ac3dde-cf55-42b7-9634-8c2fbef9382c animalStrain pl56 One of: 012569, kj18, JAX stock number, GENSAT ID, other string 24b87e0c-92fd-4001-bcc8-978f6b45a3a9 animalGeneCopy 1 0, 1 or 2; 0: homozygous ko; 1: het transgene; 2: homo transgene int cb6704d9-223e-4e80-8314-f57c730a79c2 animalGeneModification tlx-cre Examples: PV-ires-Cre, rosa-Cag-lsl-ChR2-YFP, sim1-cre; describe genomic modification string 3c55be31-6a26-4c7e-a746-532cdce8c3d1 animalSource GENSAT Examples: JAX, GENSAT, investigator name; or other source of the animal string e62160fb-500b-4e4b-8590-ff42dea2d3a6 animalGeneticBackground unidentified Example: unidentified; describe breeding history string eff278f3-9d1c-45cb-b369-750799d222a5 animalID anm00221977 Example: anm0032456; unique animal identifier string ff022607-6334-4b9b-bb3b-c2ebed748d99 sex m sex of mouse (m,f) string db99aded-e083-4b4c-987f-494891eaad24 dateOfBirth not recorded Format: yyyymmdd (international standard notation) string 288e7de3-058b-4a4c-8239-9acba888c3c1 dateOfExperiment 20140115 Format: yyyymmdd (international standard notation) string 008d808b-85fc-4fe1-9593-d6a641d5591d timeOfExperiment 114656 Format: hhmmss (international standard notation) string 52f84e9b-ab04-44ee-af0d-1513074d25e0 experimenters Nuo Li names of experimenters string 458d6701-6164-4198-b43c-80e1aec8023f citation **PMID currently not avaliable PMID string c5dcf340-92bb-456f-9136-63149b2ee1d1 whiskerConfig full Description of the state of the whiskers during the experiment. Examples: full/ C row/ C2 string 714f7ab6-b796-4a38-8ae0-cbfb38d829ce weightBefore Weight of subject at the beginning of the experiment, in grams; Example: 20 da31d652-727d-44db-8ca6-f14084eba49f da31d652-727d-44db-8ca6-f14084eba49f Weight of subject at the end of the experiment, in grams; Example: 21 61cf3645-7b8e-48ba-878c-e89911e62da6 experimentType [behavior,extracellular,photostim] Specifies the types of experiments, not exclusive; see detailed decription below. Is one of: behavior/extracellular/wholeCell/calciumImaging/photostim. string 455e83c9-61f5-46f8-9e15-bd3b03df82ad 455e83c9-61f5-46f8-9e15-bd3b03df82ad Paxinos Specifies reference atlast for anatomical locations; Example: Allen Reference Atlas string

8c129122-3b31-46da-91a9-a4b8ba0f4eb5 Surgerical procedures Surgerical_procedures Procedures used for the surgery

a40b99e0-6687-4af6-9fc5-050b1cbc5642 virus Virus viral injection metadata a45e34a4-df04-4fba-b064-b90c327a1c5e virusSource Janelia core Source of virus. Examples: Upenn, Janelia core, investigator, other string 451da662-5b2a-472d-9d9c-932675e579b9 virusID Addgene41015 Upenn designation; or addgene; Example: AV-9-PV2833 string 4daa7f4e-ae68-42bd-8db7-484c301d3401 virusLotNumber virus lot number 1fac4172-7a62-4825-b4ac-d451cc21d246 infectionCoordinates [[2.5, -1.5, 0.3]","[2.5, -1.5, 0.7]] Locations of infection if based on histology or injection (ml, ap, depth) relative to bregma; in millimeters; if multiple injection sites give list of (x,y,z) coordinates. string 7a33177b-8009-481d-be19-42979635c087 infectionLocation M2 location of infection according to atlas. Examples: vS1 C2 barrel string f2845552-6e87-495a-9994-b4dd34ae87b6 virusTiter untitered nominal titer string 7aa2bacb-d893-43de-8a02-3da51b159ff4 injectionVolume [100,100] injection volume, in nL; Examples: 50, 50 int 5bcf48a4-87a3-4d50-937b-c45ab981343f injectionDate 20130904 Format: yyyymmdd string

9353ebcb-33a9-434f-9113-35d6c2d73ed7 surgicalManipulation virus injection Specifies the types of surgical manipulations. Not exclusive. Examples: Virus injection/fiber implant/window implant/drug injection/electroporation string

5c7a3468-336d-4e58-88f8-1d6e1cef2b3f Extracellular recordings Extracellular Extracellular recordings metadata cac9dae7-0019-4f76-8c41-91262b41b681 recordingCoordinates [2.5,-1.5,687.0422254603595] Location of probe 1 (ml, ap, depth) relative to bregma; in millimeters. This is the center of the tips; for example, the location in a 4-shank electrode will be specified as a point along the tips, but between the two center shanks. Example: P: 1.5; Lat: 3.5; depth float 5b1a1c7b-1ba7-4054-a007-d2b3296ba707 recordingLocation M2 location according to reference atlas or anatomy or ISI; Example: vS1, C2, Paxinos or ISI string c2431605-6aac-432b-94f8-60c01b391b37 recordingMarker stereotaxic Examples: DiI, lesion, stereotaxic, ISI string 70f44ba2-083e-4ab6-bd99-915bf82b84cd recordingType accute One of: chronic, accute string 07a08055-1a39-420f-a78f-0063c1a2154f penetrationN 1 The nth time to access the tissue. Example: 1 int 2735702c-bed1-499d-aba7-4c0ee306c238 probeSource neuronexus Examples: neuronexus, apig string b797fe33-3caa-4fe2-81f3-0934da480289 probeType A4x8-5mm-100-200-177 NN part#/ tetrode / Janelia ref string 7743fea9-b19b-4495-a94e-f05a7ed9e2d8 groundCoordinates [-5, -1, 1] (ml, ap, depth) relative to bregma; in millimeters string fe082305-69cb-45ad-adfb-d48c0af031df referenceCoordinates (ml, ap, depth) relative to bregma; in millimeters string 91fbb84f-adef-4e18-bb41-a84553a24258 siteLocations [(2.5;-1.2;0.577),(2.5;-1.2;0.477),(2.5;-1.2;0.377),(2.5;-1.2;0.277),(2.5;-1.2;0.177),(2.5;-1.2;0.077),(2.5;-1.2;-0.023),(2.5;-1.2;-0.123),(2.5;-1.4;0.577),(2.5;-1.4;0.477),(2.5;-1.4;0.377),(2.5;-1.4;0.277),(2.5;-1.4;0.177),(2.5;-1.4;0.077),(2.5;-1.4;-0.023),(2.5;-1.4;-0.123),(2.5;-1.6;0.577),(2.5;-1.6;0.477),(2.5;-1.6;0.377),(2.5;-1.6;0.277),(2.5;-1.6;0.177),(2.5;-1.6;0.077),(2.5;-1.6;-0.023),(2.5;-1.6;-0.123),(2.5;-1.8;0.577),(2.5;-1.8;0.477),(2.5;-1.8;0.377),(2.5;-1.8;0.277),(2.5;-1.8;0.177),(2.5;-1.8;0.077),(2.5;-1.8;-0.023),(2.5;-1.8;-0.123)] array of locations, one per site (ml, ap, depth); in micrometers 3-tuple 3717d030-7163-474a-ac4a-80c2cae489fa extracellularDataType [sorted spike times,spike waveform snipets,spike band voltage traces] Either: sorted spike times, spike waveform snipets, spike band voltage traces, local field potential string 994832ae-fbac-4aa2-a0cd-fc879777cab0 cellType [pyramidal,interneuron,pyramidal tract neuron,corpus callosal projection neuron] Array of cell types; Example: pyramidal, PT neuron string bd6a264f-1ef3-4bec-a714-a18d2d9acf72 identificationMethod [waveform shape,waveform shape,ChR tagging and collision test,ChR tagging and collision test] Example: waveform shape, ChR tagging string f7539e1a-1046-4fa8-adac-9ffb4552f9d1 amplifierRolloff rolloff frequency of the recording system, kHz 9391b7b7-6ac0-4855-b082-b611966114e9 spikeSorting manual algorithm or manual; for algorithm, provide citation of the original method paper string 21f2a41a-9f50-469f-a4c1-1976a279a131 ADunit 14 bits Describe the AD unit; example: '14 bits' string

b64450ca-875e-40d7-b16d-4490723b2efb Photostim Photostim Photostimulation metadata fb2dde7c-2c79-48b7-a97a-cbe7464cc7e3 photostimWavelength 473 photostimulation wavelength in nanometers int 095c96bb-56dd-42e5-8ee7-d9fd2891f54b stimulationMethod [clear skull,craniotomy] specifies the types of photostimulation experiment, not exclusive. Examples: clear skull, craniotomy, glass window, optica fiber, 2P excitation string ac183231-f064-47a7-9647-fa2f4df3fd82 photostimCoordinates [(2.5;1.5;0),(2.5;-1.5;0)] x,y,z; laser focal location or fiber tip location; (ml, ap, depth) relative to bregma; in millimeters 3-tuple 8ba62818-93cf-4423-988e-21b02675aaf1 photostimLocation [ALM,ALM] Example: ALM string 3e4b7974-1ee2-4343-983d-e31e6dece2b9 identificationMethod [stereotaxic coordinate,stereotaxic coordinate] Example: histology string

881eaec9-ee79-48df-945c-517e80ce60b0 Behavior Behavior Behavior metadata 69c4c885-0d2f-4056-8680-836450fd0d27 task_keyword [detection,discrimination,lick Left lick Right,delay,somatosensory,motor,response,reward] One of: detection, discrimination, go nogo, lick Left lick Right, delay, somatosensory, motor, response, reward string