analysis
Analysis
Sections of the Analysis type can be used to describe analyses.
https://terminologies.g-node.org/v1.1/analysis/analysis.xml
analysis/power_spectrum
PowerSpectrum
Properties of this section define the way a power spectrum was calculated.
https://terminologies.g-node.org/v1.1/analysis/power_spectrum.xml
analysis/psth
PSTH
An Analysis-type section to describe a PSTH.
https://terminologies.g-node.org/v1.1/analysis/psth.xml
blackrock
Blackrock
Information on the Cerebus^TM data acquisition system
https://terminologies.g-node.org/v1.1/blackrock/blackrock.xml
carmen_mini
CarmenMini
This is a convenience section that lists the terms of the CARMEN MINI (Gibson et al. Nature Precedings,
2009 Version 0.6) and maps them to the odml "standard" terminologies.
https://terminologies.g-node.org/v1.1/carmenMini/carmen_mini.xml
cell
Cell
Specification of the recorded cell. A cell definition should be a subsection of the
Subject
section.
https://terminologies.g-node.org/v1.1/cell/cell.xml
dataset
Dataset
Names (URLs) and times of recorded data files. Datasets are obtained during a Recording and may belong
to different Experiments. Related sections that can be used as subsections, parent sections, or siblings are
Stimulus, HardwareSettings, and Experiment.
https://terminologies.g-node.org/v1.1/dataset/dataset.xml
data_reference
DataCite
A published dataset referenced by a DOI and registered with DataCite. The referenced dataset will contain either the odML file itself or the data the odML is annotating.
https://terminologies.g-node.org/v1.1/datareference/datacite.xml
data_reference
DataDOI
A published dataset referenced by a DOI. The referenced dataset will contain either the odML file itself or the data the odML is annotating.
https://terminologies.g-node.org/v1.1/datareference/datadoi.xml
data_reference
DataURI
A published dataset referenced by a URI. The referenced dataset will contain either the odML file itself or the data the odML is annotating.
https://terminologies.g-node.org/v1.1/datareference/datauri.xml
data_reference
DataURL
A published dataset referenced by a URL. The referenced dataset will contain either the odML file itself or the data the odML is annotating.
https://terminologies.g-node.org/v1.1/datareference/dataurl.xml
data_reference/description
DataReferenceDescription
Description of a data reference. This Section is defined to be used as a subsection of the 'DataReference' type sections.
https://terminologies.g-node.org/v1.1/datareference/referencedescription.xml
electrode
Electrode
Properties to describe an electrode.
https://terminologies.g-node.org/v1.1/electrode/electrode.xml
event
Event
Section for short annotations that are taken during an experiment to describe certain events.
https://terminologies.g-node.org/v1.1/event/event.xml
event_list
EventList
Section for grouping short annotations that are taken during
an experiment, preparation etc...
https://terminologies.g-node.org/v1.1/collection/event_list.xml
experiment
Experiment
Specification of an experiment. The Experiment is part of a Project and the recorded data for a specific
Experiment are found in Datasets. Possible subsections are, for example, Dataset and Stimulus.
https://terminologies.g-node.org/v1.1/experiment/experiment.xml
experiment/behavior
Behavior
Properties for describing an behavioural experiment.
https://terminologies.g-node.org/v1.1/experiment/behavior.xml
experiment/electrophysiology
Electrophysiology
Properties for describing an electrophysiological experiment.
https://terminologies.g-node.org/v1.1/experiment/electrophysiology.xml
experiment/imaging
Imaging
Properties for describing an imaging experiment ranging from conventional light microscpoy to fMRI.
https://terminologies.g-node.org/v1.1/experiment/imaging.xml
experiment/psychophysics
Psychophysics
Properties for describing an psychophysical experiment.
https://terminologies.g-node.org/v1.1/experiment/psychophysics.xml
hardware_properties
HardwareProperties
https://terminologies.g-node.org/v1.1/collection/hardware_properties.xml
hardware_settings
HardwareSettings
The used values of variable properties of hardware
components. There are two sections for describing hardware
components: the "HardwareProperties" and the "HardwareSettings"
section. While the HardwareProperties describe the fixed
properties of the hardware that can not be changed, the
HardwareSettings section describes the actual, adjustable,
parameters of the hardware that may change with each recording
or dataset. For example, the sample rate of an data-acquisition
board or the settings of a filter. In each of these two sections
there are subsections for each device that correspond to the
class of the device like data-acquisition, amplifier, etc. Some
properties are common for any type.
https://terminologies.g-node.org/v1.1/collection/hardware_settings.xml
hardware
Hardware
Fixed properties of hardware components used in the
experimental setup. There are two sections for describing
hardware components: the "HardwareProperties" and the
"HardwareSettings" section. While the HardwareProperties
describe the fixed properties of the hardware that can not be
changed, the HardwareSettings section describes the actual,
adjustable, parameters of the hardware that may change with each
recording or dataset. For example, the sample rate of an
data-acquisition board or the settings of a filter. In each of
these two sections there are subsections for each device that
correspond to the class of the device like data-acquisition,
amplifier, etc. Some properties are common for any
type.
https://terminologies.g-node.org/v1.1/hardware/hardware.xml
hardware/amplifier
Amplifier
The amplifier section defines elements that can be used to describe amplifier properties and settings.
https://terminologies.g-node.org/v1.1/hardware/amplifier.xml
hardware/attenuator
Attenuator
Settings of the data acquisition system. most settings refer to individual channels the channel
number should be given after the property name like DAQ. AISampleRate0 for the sampling rate of the analog
input channel 0.
https://terminologies.g-node.org/v1.1/hardware/attenuator.xml
hardware/camera_objective
CameraObjective
This section contains properties that describe a camera objective.
https://terminologies.g-node.org/v1.1/hardware/camera_objective.xml
hardware/daq
DataAcquisition
The hardware section describes the settings of the used hardware. There should be one hardware section
for each hardware item that was used.
https://terminologies.g-node.org/v1.1/hardware/daq.xml
hardware/eyetracker
Eyetracker
Properties of an eyetracker.
https://terminologies.g-node.org/v1.1/hardware/eyetracker.xml
hardware/filter
Filter
Properties a filter modul for analog signal conditioning.
https://terminologies.g-node.org/v1.1/hardware/filter.xml
hardware/filter_set
Filterset
The FilterSet or also FilterCube used in a microscope.
https://terminologies.g-node.org/v1.1/hardware/filter_set.xml
hardware/iaq
ImageAcquisition
Properties to define an Image acquisition device. This can be a framegrabber, a camera etc.
https://terminologies.g-node.org/v1.1/hardware/iaq.xml
hardware/microscope
Microscope
The Microscope section describes the properties of the used microscope.
https://terminologies.g-node.org/v1.1/hardware/microscope.xml
hardware/microscope_objective
MicroscopeObjective
This section contains properties that describe the objective used in a microscope.
https://terminologies.g-node.org/v1.1/hardware/microscope_objective.xml
hardware/scanner
Scanner
The Scanner used to scan microscope images.
https://terminologies.g-node.org/v1.1/hardware/scanner.xml
hardware/stimulus_isolator
StimulusIsolator
Properties of a stimulus Isolator device.
https://terminologies.g-node.org/v1.1/hardware/stimulus_isolator.xml
license
License
This section contains keywords to a data or software license.
https://terminologies.g-node.org/v1.1/license/license.xml
model/lif
Leaky integrate and fire
Section to describe a leaky integrate and fire neuron model.
https://terminologies.g-node.org/v1.1/model/lif.xml
model/multi_compartment
Multi compartment model
Section to describe a biophysical model that consists of a number of compartments.
https://terminologies.g-node.org/v1.1/model/multi_compartment.xml
model/pif
perfect integrate and fire
Section to describe a perfect integrate and fire model.
https://terminologies.g-node.org/v1.1/model/pif.xml
model/single_compartment
One compartment model
Section to describe a biophysical model that consists of a single compartment.
https://terminologies.g-node.org/v1.1/model/single_compartment.xml
person
Person
Information about a person. E.g. as Experimenter, Author, etc.
https://terminologies.g-node.org/v1.1/person/person.xml
preparation
Preparation
Description of the preparation procedure.
https://terminologies.g-node.org/v1.1/preparation/preparation.xml
project
Project
Information about the project.
https://terminologies.g-node.org/v1.1/project/project.xml
protocol
protocol
Information about the experimental protocol.
https://terminologies.g-node.org/v1.1/protocol/protocol.xml
questionnaire/question
Question
Description of a question if a questionnaire.
https://terminologies.g-node.org/v1.1/questionnaire/question.xml
questionnaire/questionnaire
Questionnaire
Description of a questionnaire.
https://terminologies.g-node.org/v1.1/questionnaire/questionnaire.xml
recording
Recording
During a recording session in a Setup Datasets are obtained from Cells and/or a Subject by using various
stimuli (Stimulus section).
https://terminologies.g-node.org/v1.1/recording/recording.xml
response
Response
General description of an received response (on stimulus).
https://terminologies.g-node.org/v1.1/response/response.xml
setup
Setup
The experimental setup used in the recordings. By using HardwareProperties as a subsection, a very
detailed description of the setup can be given.
https://terminologies.g-node.org/v1.1/setup/setup.xml
stimulus
Stimulus
General description of an applied stimulus. This section is basis of various related sections that
specify more specific stimuli.
https://terminologies.g-node.org/v1.1/stimulus/stimulus.xml
stimulus/dc
DC
Property definitions to describe a DC stimulus meaning a constant stimulus e.g. a constant illumination,
current etc.
https://terminologies.g-node.org/v1.1/stimulus/dc.xml
stimulus/gabor
Gabor
https://terminologies.g-node.org/v1.1/stimulus/gabor.xml
stimulus/grating
Grating
Property definitions to describe Gabor stimuli.
https://terminologies.g-node.org/v1.1/stimulus/grating.xml
stimulus/movie
Movie
Properties to describe a movie (or image sequence) stimulus.
https://terminologies.g-node.org/v1.1/stimulus/movie.xml
stimulus/pulse
Pulse
Properties to describe a simple pulse stimulus that starts from and returns to a certain baseline.
https://terminologies.g-node.org/v1.1/stimulus/pulse.xml
stimulus/ramp
Ramp
A ramp stimulus may either linearly increase or decrease in amplitude. Starting from a certain start
amplitude and reaching with a certain slope the destination amplitude.
https://terminologies.g-node.org/v1.1/stimulus/ramp.xml
stimulus/random_dot
RandomDot
Properties to describe a random dot stimulus.
https://terminologies.g-node.org/v1.1/stimulus/random_dot.xml
stimulus/sawtooth
Sawtooth
https://terminologies.g-node.org/v1.1/stimulus/sawtooth.xml
stimulus/sine_wave
Sinewave
Sawtooth Properties.
https://terminologies.g-node.org/v1.1/stimulus/sine_wave.xml
stimulus/square_wave
Squarewave
A squarewave stimulus was presented. Squarewaves modulate with a certain frequency about the intensity
offset.
https://terminologies.g-node.org/v1.1/stimulus/square_wave.xml
stimulus/white_noise
Whitenoise
Property definitions to describe a white noise stimulus.
https://terminologies.g-node.org/v1.1/stimulus/white_noise.xml
subject
Subject
The investigated experimental subject (animal or person).
May contain the Cell and Preparation sections as subsections.
https://terminologies.g-node.org/v1.1/subject/subject.xml