import matplotlib.pyplot as plt import noise import numpy as np from brian2.units import * from scripts.spatial_maps.orientation_map import OrientationMap from scripts.interneuron_placement import create_interneuron_sheet_entropy_max_orientation from tqdm import tqdm from scripts.interneuron_placement import create_grid_of_excitatory_neurons, \ create_interneuron_sheet_by_repulsive_force use_saved_array = False trials_per_scale = 1 N_E = 900 N_I = 90 sheet_x = 450 * um sheet_y = 450 * um inhibitory_axon_long_axis = 100 * um inhibitory_axon_short_axis = 25 * um number_of_excitatory_neurons_per_row = int(np.sqrt(N_E)) ''' Tuning Maps ''' # tuning_label = "Perlin" tuning_label = "Orientation map" # optimization_label = "Repulsive" optimization_label = "Entropy Optimization" corr_len_list = range(0,451,15) #For these values maps exist ellipse_trial_entropy_list = [] circle_trial_entropy_list = [] if not use_saved_array: for corr_len in tqdm(corr_len_list, desc="Calculating entropy over scale"): #TODO: Add trials, since the maps are random ellipse_single_trial_entropy_list = [] circle_single_trial_entropy_list = [] for seed in range(10): print(corr_len,seed) if tuning_label == "Perlin": #TODO: How to handle scale in Perlin tuning_map = lambda x, y: noise.pnoise2(x / 100.0, y / 100.0, octaves=2)*np.pi elif tuning_label == "Orientation map": map = OrientationMap(number_of_excitatory_neurons_per_row + 1,number_of_excitatory_neurons_per_row + 1, corr_len,sheet_x/um,sheet_y/um,seed) # map.improve(10) try: map.load_orientation_map() except: print('No map yet with {}x{} pixels and {} pixel correllation length and {} seed'.format(map.x_dim, map.y_dim, map.corr_len, map.rnd_seed)) continue tuning_map = lambda x, y: map.tuning(x, y) ex_positions, ex_tunings = create_grid_of_excitatory_neurons(sheet_x / um, sheet_y / um, number_of_excitatory_neurons_per_row, tuning_map) inhibitory_radial_axis = np.sqrt(inhibitory_axon_long_axis * inhibitory_axon_short_axis) if optimization_label == "Repulsive": inhibitory_axonal_clouds = create_interneuron_sheet_by_repulsive_force(N_I, inhibitory_axon_long_axis / um, inhibitory_axon_short_axis / um, sheet_x / um, sheet_y / um, random_seed=2, n_iterations=1000) inhibitory_axonal_circles = create_interneuron_sheet_by_repulsive_force(N_I, inhibitory_radial_axis / um, inhibitory_radial_axis / um, sheet_x / um, sheet_y / um, random_seed=2, n_iterations=1000) elif optimization_label == "Entropy Optimization": inhibitory_axonal_clouds, ellipse_single_trial_entropy = create_interneuron_sheet_entropy_max_orientation(ex_positions, ex_tunings, N_I, inhibitory_axon_long_axis / um, inhibitory_axon_short_axis / um, sheet_x / um, sheet_y / um, trial_orientations=30) inhibitory_axonal_circles, circle_single_trial_entropy = create_interneuron_sheet_entropy_max_orientation(ex_positions, ex_tunings, N_I, inhibitory_radial_axis / um, inhibitory_radial_axis / um, sheet_x / um, sheet_y / um, trial_orientations=1) ellipse_single_trial_entropy_list.append(ellipse_single_trial_entropy) circle_single_trial_entropy_list.append(circle_single_trial_entropy) ellipse_trial_entropy_list.append(ellipse_single_trial_entropy_list) circle_trial_entropy_list.append(circle_single_trial_entropy_list) # interneuron_tunings = [inhibitory_axonal_clouds, inhibitory_axonal_circles] # plot_neural_sheet(ex_positions, ex_tunings, inhibitory_axonal_clouds) np.save('../../simulations/2020_02_27_entropy_over_noise_scale/circle_trial_entropy_list.npy', circle_trial_entropy_list) np.save('../../simulations/2020_02_27_entropy_over_noise_scale/ellipse_trial_entropy_list.npy', ellipse_trial_entropy_list) else: circle_trial_entropy_list = np.load( '../../simulations/2020_02_27_entropy_over_noise_scale/circle_trial_entropy_list.npy') ellipse_trial_entropy_list = np.load( '../../simulations/2020_02_27_entropy_over_noise_scale/ellipse_trial_entropy_list.npy') ellipse_entropy_mean = np.array([np.mean(i) for i in ellipse_trial_entropy_list]) circle_entropy_mean = np.array([np.mean(i) for i in circle_trial_entropy_list]) ellipse_entropy_std_dev = np.array([np.std(i) for i in ellipse_trial_entropy_list]) circle_entropy_std_dev = np.array([np.std(i) for i in circle_trial_entropy_list]) print(ellipse_trial_entropy_list) print(ellipse_entropy_std_dev) plt.figure() plt.plot(corr_len_list,circle_entropy_mean, label='Circle', marker='o',color='C1') plt.fill_between(corr_len_list,circle_entropy_mean-circle_entropy_std_dev,circle_entropy_mean+circle_entropy_std_dev,color='C1',alpha=0.4) plt.plot(corr_len_list,ellipse_entropy_mean, label='Ellipse', marker='o',color='C2') plt.fill_between(corr_len_list,ellipse_entropy_mean-ellipse_entropy_std_dev,ellipse_entropy_mean+ellipse_entropy_std_dev,color='C2',alpha=0.4) plt.xlabel('Correlation length') plt.ylabel('Entropy') plt.legend() plt.show()