function [S,f,R,Serr]=mtspectrumpt(data,params,fscorr,t) % Multi-taper spectrum - point process times % % Usage: % % [S,f,R,Serr]=mtspectrumpt(data,params,fscorr,t) % Input: % data (structure array of spike times with dimension channels/trials; % also accepts 1d array of spike times) -- required % params: structure with fields tapers, pad, Fs, fpass, err, trialave % - optional % tapers : precalculated tapers from dpss or in the one of the following % forms: % (1) A numeric vector [TW K] where TW is the % time-bandwidth product and K is the number of % tapers to be used (less than or equal to % 2TW-1). % (2) A numeric vector [W T p] where W is the % bandwidth, T is the duration of the data and p % is an integer such that 2TW-p tapers are used. In % this form there is no default i.e. to specify % the bandwidth, you have to specify T and p as % well. Note that the units of W and T have to be % consistent: if W is in Hz, T must be in seconds % and vice versa. Note that these units must also % be consistent with the units of params.Fs: W can % be in Hz if and only if params.Fs is in Hz. % The default is to use form 1 with TW=3 and K=5 % % pad (padding factor for the FFT) - optional (can take values -1,0,1,2...). % -1 corresponds to no padding, 0 corresponds to padding % to the next highest power of 2 etc. % e.g. For N = 500, if PAD = -1, we do not pad; if PAD = 0, we pad the FFT % to 512 points, if pad=1, we pad to 1024 points etc. % Defaults to 0. % Fs (sampling frequency) - optional. Default 1. % fpass (frequency band to be used in the calculation in the form % [fmin fmax])- optional. % Default all frequencies between 0 and Fs/2 % err (error calculation [1 p] - Theoretical error bars; [2 p] - Jackknife error bars % [0 p] or 0 - no error bars) - optional. Default 0. % trialave (average over channels/trials when 1, don't average when 0) - optional. Default 0 % fscorr (finite size corrections, 0 (don't use finite size corrections) or % 1 (use finite size corrections) - optional % (available only for spikes). Defaults 0. % t (time grid over which the tapers are to be calculated: % this argument is useful when calling the spectrum % calculation routine from a moving window spectrogram % calculation routine). If left empty, the spike times % are used to define the grid. % Output: % S (spectrum with dimensions frequency x channels/trials if trialave=0; % dimension frequency if trialave=1) % f (frequencies) % R (rate) % Serr (error bars) - only if err(1)>=1 if nargin < 1; error('Need data'); end; if nargin < 2; params=[]; end; [tapers,pad,Fs,fpass,err,trialave,params]=getparams(params); clear params data=change_row_to_column(data); if nargout > 3 && err(1)==0; error('cannot compute error bars with err(1)=0; change params and run again'); end; if nargin < 3 || isempty(fscorr); fscorr=0;end; if nargin < 4 || isempty(t); [mintime,maxtime]=minmaxsptimes(data); dt=1/Fs; % sampling time t=mintime-dt:dt:maxtime+dt; % time grid for prolates end; N=length(t); % number of points in grid for dpss nfft=max(2^(nextpow2(N)+pad),N); % number of points in fft of prolates [f,findx]=getfgrid(Fs,nfft,fpass); % get frequency grid for evaluation tapers=dpsschk(tapers,N,Fs); % check tapers [J,Msp,Nsp]=mtfftpt(data,tapers,nfft,t,f,findx); % mt fft for point process times S=squeeze(mean(conj(J).*J,2)); if trialave; S=squeeze(mean(S,2));Msp=mean(Msp);end; R=Msp*Fs; if nargout==4; if fscorr==1; Serr=specerr(S,J,err,trialave,Nsp); else Serr=specerr(S,J,err,trialave); end; end;