% This script gives an overview of all the analysis step necessary to
% recreate the figures and stats of Klink et al. (2017) Neuron
% http://dx.doi.org/10.1016/j.neuron.2017.05.033

%% Add function folders -------------------------------------------------
fld.scripts = pwd;
addpath(genpath('FUNCTIONS'));

cd ../
fld.project = pwd;

cd(fld.scripts);

%% Specify more folder paths --------------------------------------------
fld.data = fullfile(fld.project,'DATA');
fld.figs = fullfile(fld.project,'FIGURES'); mkdir(fld.figs);

%% Figures Feedforward --------------------------------------------------
% this generates a number of figure panels related to feedforward effects
close all; clc;

% load
load(fullfile(fld.data,'V1MS_CAC.mat'));
save_figs = true;

% generate figures 
FF_FIGURES;

% close figures
close all;

%% Figures Feedback -----------------------------------------------------
% this generates a number of figure panels related to feedback effects
close all; clc;

% load
load(fullfile(fld.data,'V4MS_CAC.mat'));
save_figs = true;

% generate figures 
FB_FIGURES;

% close figures
close all;

%% Figures Figure-Ground ------------------------------------------------
% this generates a number of figure panels related to fig-gnd effects
close all; clc;
save_figs = true;

% generate figures 
FG_FIGURES; 
% close figures
close all hidden;

% Suppl figure 6
FG_spikes_ms5p; 
% close figures
close all hidden;

%% Stratification analysis ----------------------------------------------
% this generates a number of figure panels related to stratification
close all; clc;
save_figs = true;

% generate figures 
STRAT_FIGURES;

% close figures
close all hidden;

%% V1V1 analysis --------------------------------------------------------
% this generates a number of figure panels related to interareal V1-MS
close all; clc;
save_figs = true;

% generate figures 
V1V1_spikes_ms1p;

% close figures
close all hidden;

%% Eye Movement analysis ------------------------------------------------
% This compares microsaccade amplitude and frequency between MS and no-MS
close all; clc;
save_figs = true;

% generate figures 
SACCADE_Analysis;

% close figures
close all hidden;