authors: - firstname: "Frederik Filip" lastname: "Stæger" affiliation: "Center for Translational Neuromedicine, Faculty of Health and Medical Sciences, University of Copenhagen, 2200 Copenhagen, Denmark" id: "ORCID:0000-0002-2295-8637" - firstname: "Kristian" lastname: "Mortensen" affiliation: "Center for Translational Neuromedicine, Faculty of Health and Medical Sciences, University of Copenhagen, 2200 Copenhagen, Denmark" id: "ORCID:0000-0003-3726-0781" - firstname: "Louis" affiliation: "Center for Translational Neuromedicine, Faculty of Health and Medical Sciences, University of Copenhagen, 2200 Copenhagen, Denmark" lastname: "Kaufmann" - firstname: "Hajime" affiliation: "Center for Translational Neuromedicine, Faculty of Health and Medical Sciences, University of Copenhagen, 2200 Copenhagen, Denmark" lastname: "Hirase" id: "ORCID:0000-0003-3806-6905" - firstname: "Björn" affiliation: "Center for Translational Neuromedicine, Faculty of Health and Medical Sciences, University of Copenhagen, 2200 Copenhagen, Denmark" lastname: "Sigurdsson" id: "ORCID:0000-0002-7484-7779" - firstname: "Maiken" affiliation: "Center for Translational Neuromedicine, Faculty of Health and Medical Sciences, University of Copenhagen, 2200 Copenhagen, Denmark\nand\nCenter for Translational Neuromedicine, University of Rochester Medical Center, Rochester, NY 14642, USA." lastname: "Nedergaard" id: "ORCID:0000-0001-6502-6031" title: "A three-dimensional, population-based average of the C57BL/6 mouse brain from DAPI-stained coronal slices" description: "The full data set and pipeline for constructing the three-dimensional, population-based average of the C57BL/6 mouse brain form DAPI-stained coronal slices.\nThis repository also contains a python implementation of automatic coronal brain slice segmentation.\nThe data set constitutes of all the raw slice images (.tif) in full resolution, the pre-processed version (.nii), the individually reconstructed brain volumes, and the final population-based average." keywords: - Neuroscience - Mouse brain template - C57BL/6 brain template - DAPI - Population-based average - Automatic segementation references: - reftype: "IsDescribedBy" name: "A three-dimensional, population-based average of the C57BL/6 mouse brain from DAPI-stained coronal slices" license: name: "Creative Commons CC0 1.0 Public Domain Dedication" url: "https://creativecommons.org/publicdomain/zero/1.0/" resourcetype: Dataset