authors:
  -
    firstname: "Frederik Filip"
    lastname: "Stæger"
    affiliation: "Center for Translational Neuromedicine, Faculty of Health and Medical Sciences, University of Copenhagen, 2200 Copenhagen, Denmark"
    id: "ORCID:0000-0002-2295-8637"
  -
    firstname: "Kristian"
    lastname: "Mortensen"
    affiliation: "Center for Translational Neuromedicine, Faculty of Health and Medical Sciences, University of Copenhagen, 2200 Copenhagen, Denmark"
    id: "ORCID:0000-0003-3726-0781"
  -
    firstname: "Louis"
    affiliation: "Center for Translational Neuromedicine, Faculty of Health and Medical Sciences, University of Copenhagen, 2200 Copenhagen, Denmark"
    lastname: "Kaufmann"
  -
    firstname: "Hajime"
    affiliation: "Center for Translational Neuromedicine, Faculty of Health and Medical Sciences, University of Copenhagen, 2200 Copenhagen, Denmark"
    lastname: "Hirase"
    id: "ORCID:0000-0003-3806-6905"
  -
    firstname: "Björn"
    affiliation: "Center for Translational Neuromedicine, Faculty of Health and Medical Sciences, University of Copenhagen, 2200 Copenhagen, Denmark"
    lastname: "Sigurdsson"
    id: "ORCID:0000-0002-7484-7779"
  -
    firstname: "Maiken"
    affiliation: "Center for Translational Neuromedicine, Faculty of Health and Medical Sciences, University of Copenhagen, 2200 Copenhagen, Denmark\nand\nCenter for Translational Neuromedicine, University of Rochester Medical Center, Rochester, NY 14642, USA."
    lastname: "Nedergaard"
    id: "ORCID:0000-0001-6502-6031"
title: "A three-dimensional, population-based average of the C57BL/6 mouse brain from DAPI-stained coronal slices"
description: "The full data set and pipeline for constructing the three-dimensional, population-based average of the C57BL/6 mouse brain form DAPI-stained coronal slices.\nThis repository also contains a python implementation of automatic coronal brain slice segmentation.\nThe data set constitutes of all the raw slice images (.tif) in full resolution, the pre-processed version (.nii), the individually reconstructed brain volumes, and the final population-based average."
keywords:
  - Neuroscience
  - Mouse brain template
  - C57BL/6 brain template
  - DAPI
  - Population-based average
  - Automatic segementation
references:
  -
    reftype: "IsDescribedBy"
    name: "A three-dimensional, population-based average of the C57BL/6 mouse brain from DAPI-stained coronal slices"
license:
  name: "Creative Commons CC0 1.0 Public Domain Dedication"
  url: "https://creativecommons.org/publicdomain/zero/1.0/"
resourcetype: Dataset