Notice: '/data/testdata_AIDA/proc_data/sub-SPsV1c1m3/ses-P5/anat/sub-SPsV1c1m3_ses-P5_T2wBiasBet.nii.gz' has no defined reference (stroke) mask - will proceed without.
Output of reg_aladin -ref /data/testdata_AIDA/proc_data/sub-SPsV1c1m3/ses-P5/anat/sub-SPsV1c1m3_ses-P5_T2wBiasBet.nii.gz -flo /aida/lib/NP_template_sc0.nii.gz -res /data/testdata_AIDA/proc_data/sub-SPsV1c1m3/ses-P5/anat/sub-SPsV1c1m3_ses-P5_T2wBiasBet_TemplateAff.nii.gz -aff /data/testdata_AIDA/proc_data/sub-SPsV1c1m3/ses-P5/anat/sub-SPsV1c1m3_ses-P5_T2wBiasBetMatrixAff.txt:

[NiftyReg ALADIN] Command line:
	 reg_aladin -ref /data/testdata_AIDA/proc_data/sub-SPsV1c1m3/ses-P5/anat/sub-SPsV1c1m3_ses-P5_T2wBiasBet.nii.gz -flo /aida/lib/NP_template_sc0.nii.gz -res /data/testdata_AIDA/proc_data/sub-SPsV1c1m3/ses-P5/anat/sub-SPsV1c1m3_ses-P5_T2wBiasBet_TemplateAff.nii.gz -aff /data/testdata_AIDA/proc_data/sub-SPsV1c1m3/ses-P5/anat/sub-SPsV1c1m3_ses-P5_T2wBiasBetMatrixAff.txt

[reg_aladin_sym] Parameters
[reg_aladin_sym] Reference image name: /data/testdata_AIDA/proc_data/sub-SPsV1c1m3/ses-P5/anat/sub-SPsV1c1m3_ses-P5_T2wBiasBet.nii.gz
[reg_aladin_sym] 	256x256x48 voxels
[reg_aladin_sym] 	0.0683594x0.0683594x0.3 mm
[reg_aladin_sym] Floating image name: /aida/lib/NP_template_sc0.nii.gz
[reg_aladin_sym] 	228x160x264 voxels
[reg_aladin_sym] 	0.05x0.05x0.05 mm
[reg_aladin_sym] Maximum iteration number: 5 (10 during the first level)
[reg_aladin_sym] Percentage of blocks: 50 %
* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * *
[reg_aladin_sym] Current level 1 / 3
[reg_aladin_sym] reference image size: 	64x64x48 voxels	0.273438x0.273438x0.3 mm
[reg_aladin_sym] floating image size: 	57x40x66 voxels	0.2x0.2x0.2 mm
[reg_aladin_sym] Block size = [4 4 4]
* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * *
[reg_aladin_sym] Forward Block number = [16 16 12]
[reg_aladin_sym] Backward Block number = [15 10 17]
[reg_aladin_sym] Initial forward transformation matrix::
1	0	0	-8.725
0	1	0	-11.325
0	0	1	-4.575
0	0	0	1
[reg_aladin_sym] Initial backward transformation matrix::
1	0	0	8.725
0	1	0	11.325
0	0	1	4.575
0	0	0	1
* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * *
[reg_aladin_sym] Final forward transformation matrix::
1.03127	-0.0485183	-0.0236794	-8.16295
0.0312682	1.15046	0.0340116	-13.4164
0.0167156	-0.0543036	0.959543	-3.82439
0	0	0	1
[reg_aladin_sym] Final backward transformation matrix::
0.968046	0.0418827	0.0224047	8.54971
-0.0257686	0.866648	-0.0313548	11.2971
-0.0183221	0.0483168	1.04	4.47603
0	0	0	1
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
[reg_aladin_sym] Current level 2 / 3
[reg_aladin_sym] reference image size: 	128x128x48 voxels	0.136719x0.136719x0.3 mm
[reg_aladin_sym] floating image size: 	114x80x132 voxels	0.1x0.1x0.1 mm
[reg_aladin_sym] Block size = [4 4 4]
* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * *
[reg_aladin_sym] Forward Block number = [32 32 12]
[reg_aladin_sym] Backward Block number = [29 20 33]
[reg_aladin_sym] Initial forward transformation matrix::
1.03127	-0.0485183	-0.0236794	-8.16295
0.0312682	1.15046	0.0340116	-13.4164
0.0167156	-0.0543036	0.959543	-3.82439
0	0	0	1
[reg_aladin_sym] Initial backward transformation matrix::
0.968046	0.0418827	0.0224047	8.54971
-0.0257686	0.866648	-0.0313548	11.2971
-0.0183221	0.0483168	1.04	4.47603
0	0	0	1
* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * *
[reg_aladin_sym] Final forward transformation matrix::
1.02813	-0.030005	-0.0283593	-8.26036
0.0328736	1.15258	0.0333377	-13.4431
0.0115455	-0.0609782	0.975968	-3.78154
0	0	0	1
[reg_aladin_sym] Final backward transformation matrix::
0.971478	0.0267357	0.0273156	8.48747
-0.0273265	0.865305	-0.0303516	11.2918
-0.0131997	0.0537478	1.0224	4.47977
0	0	0	1
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
[reg_aladin_sym] Current level 3 / 3
[reg_aladin_sym] reference image size: 	256x256x48 voxels	0.0683594x0.0683594x0.3 mm
[reg_aladin_sym] floating image size: 	228x160x264 voxels	0.05x0.05x0.05 mm
[reg_aladin_sym] Block size = [4 4 4]
* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * *
[reg_aladin_sym] Forward Block number = [64 64 12]
[reg_aladin_sym] Backward Block number = [57 40 66]
[reg_aladin_sym] Initial forward transformation matrix::
1.02813	-0.030005	-0.0283593	-8.26036
0.0328736	1.15258	0.0333377	-13.4431
0.0115455	-0.0609782	0.975968	-3.78154
0	0	0	1
[reg_aladin_sym] Initial backward transformation matrix::
0.971478	0.0267357	0.0273156	8.48747
-0.0273265	0.865305	-0.0303516	11.2918
-0.0131997	0.0537478	1.0224	4.47977
0	0	0	1
* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * *
[reg_aladin_sym] Final forward transformation matrix::
1.03023	-0.0223568	-0.0361269	-8.31056
0.0363054	1.15326	0.0252715	-13.4412
0.0169202	-0.0481602	0.976374	-3.91361
0	0	0	1
[reg_aladin_sym] Final backward transformation matrix::
0.969358	0.0202676	0.0353427	8.46665
-0.0301154	0.865539	-0.0235171	11.2915
-0.0182841	0.042342	1.02243	4.41855
0	0	0	1
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Registration Performed in 2 min 43 sec
Have a good day !

Output of reg_aladin -ref /aida/lib/average_template_50.nii.gz -flo /data/testdata_AIDA/proc_data/sub-SPsV1c1m3/ses-P5/anat/sub-SPsV1c1m3_ses-P5_T2wBiasBet.nii.gz -res /data/testdata_AIDA/proc_data/sub-SPsV1c1m3/ses-P5/anat/sub-SPsV1c1m3_ses-P5_T2wBiasBet_IncidenceData.nii.gz -aff /data/testdata_AIDA/proc_data/sub-SPsV1c1m3/ses-P5/anat/sub-SPsV1c1m3_ses-P5_T2wBiasBetMatrixInv.txt:

[NiftyReg ALADIN] Command line:
	 reg_aladin -ref /aida/lib/average_template_50.nii.gz -flo /data/testdata_AIDA/proc_data/sub-SPsV1c1m3/ses-P5/anat/sub-SPsV1c1m3_ses-P5_T2wBiasBet.nii.gz -res /data/testdata_AIDA/proc_data/sub-SPsV1c1m3/ses-P5/anat/sub-SPsV1c1m3_ses-P5_T2wBiasBet_IncidenceData.nii.gz -aff /data/testdata_AIDA/proc_data/sub-SPsV1c1m3/ses-P5/anat/sub-SPsV1c1m3_ses-P5_T2wBiasBetMatrixInv.txt

[reg_aladin_sym] Parameters
[reg_aladin_sym] Reference image name: /aida/lib/average_template_50.nii.gz
[reg_aladin_sym] 	228x160x264 voxels
[reg_aladin_sym] 	0.05x0.05x0.05 mm
[reg_aladin_sym] Floating image name: /data/testdata_AIDA/proc_data/sub-SPsV1c1m3/ses-P5/anat/sub-SPsV1c1m3_ses-P5_T2wBiasBet.nii.gz
[reg_aladin_sym] 	256x256x48 voxels
[reg_aladin_sym] 	0.0683594x0.0683594x0.3 mm
[reg_aladin_sym] Maximum iteration number: 5 (10 during the first level)
[reg_aladin_sym] Percentage of blocks: 50 %
* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * *
[reg_aladin_sym] Current level 1 / 3
[reg_aladin_sym] reference image size: 	57x40x66 voxels	0.2x0.2x0.2 mm
[reg_aladin_sym] floating image size: 	64x64x48 voxels	0.273438x0.273438x0.3 mm
[reg_aladin_sym] Block size = [4 4 4]
* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * *
[reg_aladin_sym] Forward Block number = [15 10 17]
[reg_aladin_sym] Backward Block number = [16 16 12]
[reg_aladin_sym] Initial forward transformation matrix::
1	0	0	8.725
0	1	0	11.325
0	0	1	4.575
0	0	0	1
[reg_aladin_sym] Initial backward transformation matrix::
1	0	0	-8.725
0	1	0	-11.325
0	0	1	-4.575
0	0	0	1
* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * *
[reg_aladin_sym] Final forward transformation matrix::
0.995234	0.0501311	0.026558	8.53407
-0.0246568	0.899632	-0.0479863	11.4355
-0.0292839	0.0697463	1.03378	4.45731
0	0	0	1
[reg_aladin_sym] Final backward transformation matrix::
1.00263	-0.0536803	-0.0282496	-7.81671
0.0288906	1.10603	0.0505981	-13.1202
0.0264524	-0.076142	0.963114	-3.64791
0	0	0	1
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
[reg_aladin_sym] Current level 2 / 3
[reg_aladin_sym] reference image size: 	114x80x132 voxels	0.1x0.1x0.1 mm
[reg_aladin_sym] floating image size: 	128x128x48 voxels	0.136719x0.136719x0.3 mm
[reg_aladin_sym] Block size = [4 4 4]
* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * *
[reg_aladin_sym] Forward Block number = [29 20 33]
[reg_aladin_sym] Backward Block number = [32 32 12]
[reg_aladin_sym] Initial forward transformation matrix::
0.995234	0.0501311	0.026558	8.53407
-0.0246568	0.899632	-0.0479863	11.4355
-0.0292839	0.0697463	1.03378	4.45731
0	0	0	1
[reg_aladin_sym] Initial backward transformation matrix::
1.00263	-0.0536803	-0.0282496	-7.81671
0.0288906	1.10603	0.0505981	-13.1202
0.0264524	-0.076142	0.963114	-3.64791
0	0	0	1
* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * *
[reg_aladin_sym] Final forward transformation matrix::
0.983976	0.0307085	0.0373169	8.49204
-0.0315272	0.88867	-0.0266675	11.3822
-0.0201703	0.0575321	1.02196	4.47395
0	0	0	1
[reg_aladin_sym] Final backward transformation matrix::
1.01446	-0.0326022	-0.037894	-8.07424
0.0365291	1.1222	0.0279495	-13.2084
0.017966	-0.063819	0.976192	-3.7936
0	0	0	1
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
[reg_aladin_sym] Current level 3 / 3
[reg_aladin_sym] reference image size: 	228x160x264 voxels	0.05x0.05x0.05 mm
[reg_aladin_sym] floating image size: 	256x256x48 voxels	0.0683594x0.0683594x0.3 mm
[reg_aladin_sym] Block size = [4 4 4]
* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * *
[reg_aladin_sym] Forward Block number = [57 40 66]
[reg_aladin_sym] Backward Block number = [64 64 12]
[reg_aladin_sym] Initial forward transformation matrix::
0.983976	0.0307085	0.0373169	8.49204
-0.0315272	0.88867	-0.0266675	11.3822
-0.0201703	0.0575321	1.02196	4.47395
0	0	0	1
[reg_aladin_sym] Initial backward transformation matrix::
1.01446	-0.0326022	-0.037894	-8.07424
0.0365291	1.1222	0.0279495	-13.2084
0.017966	-0.063819	0.976192	-3.7936
0	0	0	1
* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * *
[reg_aladin_sym] Final forward transformation matrix::
0.9849	0.0283582	0.0258893	8.47959
-0.0336455	0.89254	-0.0235799	11.3893
-0.0217607	0.0675071	1.02283	4.50106
0	0	0	1
[reg_aladin_sym] Final backward transformation matrix::
1.01372	-0.0302149	-0.0263552	-8.13315
0.0387157	1.11729	0.0247777	-13.165
0.0190116	-0.0743847	0.975484	-3.70473
0	0	0	1
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Registration Performed in 2 min 45 sec
Have a good day !

Output of reg_f3d -ref /data/testdata_AIDA/proc_data/sub-SPsV1c1m3/ses-P5/anat/sub-SPsV1c1m3_ses-P5_T2wBiasBet.nii.gz -flo /aida/lib/NP_template_sc0.nii.gz -sx 3 -sy 3 -sz 3 -jl 0.3 -res /data/testdata_AIDA/proc_data/sub-SPsV1c1m3/ses-P5/anat/sub-SPsV1c1m3_ses-P5_T2wBiasBet_Template.nii.gz -cpp /data/testdata_AIDA/proc_data/sub-SPsV1c1m3/ses-P5/anat/sub-SPsV1c1m3_ses-P5_T2wBiasBetMatrixBspline.nii -aff /data/testdata_AIDA/proc_data/sub-SPsV1c1m3/ses-P5/anat/sub-SPsV1c1m3_ses-P5_T2wBiasBetMatrixAff.txt:

[NiftyReg F3D] Command line:
	 reg_f3d -ref /data/testdata_AIDA/proc_data/sub-SPsV1c1m3/ses-P5/anat/sub-SPsV1c1m3_ses-P5_T2wBiasBet.nii.gz -flo /aida/lib/NP_template_sc0.nii.gz -sx 3 -sy 3 -sz 3 -jl 0.3 -res /data/testdata_AIDA/proc_data/sub-SPsV1c1m3/ses-P5/anat/sub-SPsV1c1m3_ses-P5_T2wBiasBet_Template.nii.gz -cpp /data/testdata_AIDA/proc_data/sub-SPsV1c1m3/ses-P5/anat/sub-SPsV1c1m3_ses-P5_T2wBiasBetMatrixBspline.nii -aff /data/testdata_AIDA/proc_data/sub-SPsV1c1m3/ses-P5/anat/sub-SPsV1c1m3_ses-P5_T2wBiasBetMatrixAff.txt

[NiftyReg F3D] OpenMP is used with 8 thread(s)
[NiftyReg F3D] **************************************************
[NiftyReg F3D] INPUT PARAMETERS
[NiftyReg F3D] **************************************************
[NiftyReg F3D] Reference image:
[NiftyReg F3D] 	* name: /data/testdata_AIDA/proc_data/sub-SPsV1c1m3/ses-P5/anat/sub-SPsV1c1m3_ses-P5_T2wBiasBet.nii.gz
[NiftyReg F3D] 	* image dimension: 256 x 256 x 48 x 1
[NiftyReg F3D] 	* image spacing: 0.0683594 x 0.0683594 x 0.3 mm
[NiftyReg F3D] 	* intensity threshold for timepoint 1/1: [-3.4e+38 3.4e+38]
[NiftyReg F3D] 	* gaussian smoothing sigma: 0
[NiftyReg F3D]
[NiftyReg F3D] Floating image:
[NiftyReg F3D] 	* name: /aida/lib/NP_template_sc0.nii.gz
[NiftyReg F3D] 	* image dimension: 228 x 160 x 264 x 1
[NiftyReg F3D] 	* image spacing: 0.05 x 0.05 x 0.05 mm
[NiftyReg F3D] 	* intensity threshold for timepoint 1/1: [-3.4e+38 3.4e+38]
[NiftyReg F3D] 	* gaussian smoothing sigma: 0
[NiftyReg F3D]
[NiftyReg F3D] Warped image padding value: nan
[NiftyReg F3D]
[NiftyReg F3D] Level number: 3
[NiftyReg F3D]
[NiftyReg F3D] Maximum iteration number per level: 300
[NiftyReg F3D]
[NiftyReg F3D] Final spacing in mm: 3 3 3
[NiftyReg F3D]
[NiftyReg F3D] The NMI is used as a similarity measure.
[NiftyReg F3D] Similarity measure term weight: 0.695
[NiftyReg F3D]
[NiftyReg F3D] Bending energy penalty term weight: 0.005
[NiftyReg F3D]
[NiftyReg F3D] Linear energy penalty term weights: 0 0
[NiftyReg F3D]
[NiftyReg F3D] L2 norm of the displacement penalty term weights: 0
[NiftyReg F3D]
[NiftyReg F3D] Jacobian-based penalty term weight: 0.3
[NiftyReg F3D] 	* Jacobian-based penalty term is approximated
[NiftyReg F3D] **************************************************
[NiftyReg F3D] Current level: 1 / 3
[NiftyReg F3D] Current reference image
[NiftyReg F3D] 	* image dimension: 64 x 64 x 48 x 1
[NiftyReg F3D] 	* image spacing: 0.273438 x 0.273438 x 0.3 mm
[NiftyReg F3D] Current floating image
[NiftyReg F3D] 	* image dimension: 57 x 40 x 66 x 1
[NiftyReg F3D] 	* image spacing: 0.2 x 0.2 x 0.2 mm
[NiftyReg F3D] Current control point image
[NiftyReg F3D] 	* image dimension: 5 x 5 x 5
[NiftyReg F3D] 	* image spacing: 12 x 12 x 12 mm
[NiftyReg F3D] Initial objective function: 0.784177 = (wSIM)0.791007 - (wBE)1.6644e-15 - (wLE)0 - (wL2)0 - (wJAC)0.00683003
[NiftyReg F3D] [9] Current objective function: 0.786469 = (wSIM)0.793299 - (wBE)1.60e-08 - (wJAC)6.83e-03 [+ 0.15 mm]
[NiftyReg F3D] [17] Current objective function: 0.7867 = (wSIM)0.793509 - (wBE)4.59e-08 - (wJAC)6.81e-03 [+ 0.075 mm]
[NiftyReg F3D] [27] Current objective function: 0.788307 = (wSIM)0.795074 - (wBE)1.22e-07 - (wJAC)6.77e-03 [+ 0.163172 mm]
[NiftyReg F3D] [35] Current objective function: 0.789233 = (wSIM)0.795999 - (wBE)3.40e-07 - (wJAC)6.77e-03 [+ 0.163172 mm]
[NiftyReg F3D] [43] Current objective function: 0.78924 = (wSIM)0.796004 - (wBE)3.57e-07 - (wJAC)6.76e-03 [+ 0.00509912 mm]
[NiftyReg F3D] [45] Current objective function: 0.78924 = (wSIM)0.796004 - (wBE)3.57e-07 - (wJAC)6.76e-03 [+ 0 mm]
[NiftyReg F3D] Current registration level done
[NiftyReg F3D] --------------------------------------------------
[NiftyReg F3D] **************************************************
[NiftyReg F3D] Current level: 2 / 3
[NiftyReg F3D] Current reference image
[NiftyReg F3D] 	* image dimension: 128 x 128 x 48 x 1
[NiftyReg F3D] 	* image spacing: 0.136719 x 0.136719 x 0.3 mm
[NiftyReg F3D] Current floating image
[NiftyReg F3D] 	* image dimension: 114 x 80 x 132 x 1
[NiftyReg F3D] 	* image spacing: 0.1 x 0.1 x 0.1 mm
[NiftyReg F3D] Current control point image
[NiftyReg F3D] 	* image dimension: 6 x 6 x 6
[NiftyReg F3D] 	* image spacing: 6 x 6 x 6 mm
[NiftyReg F3D] Initial objective function: 0.783809 = (wSIM)0.790567 - (wBE)7.22512e-07 - (wLE)0 - (wL2)0 - (wJAC)0.00675708
[NiftyReg F3D] [9] Current objective function: 0.784519 = (wSIM)0.791063 - (wBE)2.18e-06 - (wJAC)6.54e-03 [+ 0.3 mm]
[NiftyReg F3D] [19] Current objective function: 0.786783 = (wSIM)0.793194 - (wBE)7.59e-06 - (wJAC)6.40e-03 [+ 0.375 mm]
[NiftyReg F3D] [28] Current objective function: 0.786937 = (wSIM)0.793315 - (wBE)1.09e-05 - (wJAC)6.37e-03 [+ 0.0375 mm]
[NiftyReg F3D] [37] Current objective function: 0.788017 = (wSIM)0.794348 - (wBE)1.62e-05 - (wJAC)6.32e-03 [+ 0.124125 mm]
[NiftyReg F3D] [46] Current objective function: 0.789491 = (wSIM)0.795776 - (wBE)1.84e-05 - (wJAC)6.27e-03 [+ 0.128392 mm]
[NiftyReg F3D] [55] Current objective function: 0.789577 = (wSIM)0.79587 - (wBE)1.83e-05 - (wJAC)6.27e-03 [+ 0.0686094 mm]
[NiftyReg F3D] [62] Current objective function: 0.789579 = (wSIM)0.795873 - (wBE)1.82e-05 - (wJAC)6.28e-03 [+ 0.0171523 mm]
[NiftyReg F3D] [68] Current objective function: 0.78961 = (wSIM)0.795904 - (wBE)1.78e-05 - (wJAC)6.28e-03 [+ 0.0360199 mm]
[NiftyReg F3D] [75] Current objective function: 0.789658 = (wSIM)0.795942 - (wBE)1.70e-05 - (wJAC)6.27e-03 [+ 0.0756418 mm]
[NiftyReg F3D] [81] Current objective function: 0.789658 = (wSIM)0.795942 - (wBE)1.70e-05 - (wJAC)6.27e-03 [+ 0 mm]
[NiftyReg F3D] Current registration level done
[NiftyReg F3D] --------------------------------------------------
[NiftyReg F3D] **************************************************
[NiftyReg F3D] Current level: 3 / 3
[NiftyReg F3D] Current reference image
[NiftyReg F3D] 	* image dimension: 256 x 256 x 48 x 1
[NiftyReg F3D] 	* image spacing: 0.0683594 x 0.0683594 x 0.3 mm
[NiftyReg F3D] Current floating image
[NiftyReg F3D] 	* image dimension: 228 x 160 x 264 x 1
[NiftyReg F3D] 	* image spacing: 0.05 x 0.05 x 0.05 mm
[NiftyReg F3D] Current control point image
[NiftyReg F3D] 	* image dimension: 9 x 9 x 8
[NiftyReg F3D] 	* image spacing: 3 x 3 x 3 mm
[NiftyReg F3D] Initial objective function: 0.784511 = (wSIM)0.790605 - (wBE)2.71458e-05 - (wLE)0 - (wL2)0 - (wJAC)0.00606706
[NiftyReg F3D] [9] Current objective function: 0.785239 = (wSIM)0.791306 - (wBE)3.51e-05 - (wJAC)6.03e-03 [+ 0.3 mm]
[NiftyReg F3D] [18] Current objective function: 0.785587 = (wSIM)0.791633 - (wBE)4.74e-05 - (wJAC)6.00e-03 [+ 0.15 mm]
[NiftyReg F3D] [27] Current objective function: 0.786174 = (wSIM)0.792193 - (wBE)5.26e-05 - (wJAC)5.97e-03 [+ 0.170625 mm]
[NiftyReg F3D] [35] Current objective function: 0.78654 = (wSIM)0.792526 - (wBE)6.50e-05 - (wJAC)5.92e-03 [+ 0.0853125 mm]
[NiftyReg F3D] [45] Current objective function: 0.786935 = (wSIM)0.792885 - (wBE)7.72e-05 - (wJAC)5.87e-03 [+ 0.204963 mm]
[NiftyReg F3D] [55] Current objective function: 0.786958 = (wSIM)0.792894 - (wBE)8.69e-05 - (wJAC)5.85e-03 [+ 0.0547636 mm]
[NiftyReg F3D] [63] Current objective function: 0.787445 = (wSIM)0.793389 - (wBE)8.65e-05 - (wJAC)5.86e-03 [+ 0.115004 mm]
[NiftyReg F3D] [71] Current objective function: 0.787513 = (wSIM)0.793459 - (wBE)8.88e-05 - (wJAC)5.86e-03 [+ 0.0575018 mm]
[NiftyReg F3D] [81] Current objective function: 0.78778 = (wSIM)0.793685 - (wBE)1.08e-04 - (wJAC)5.80e-03 [+ 0.228598 mm]
[NiftyReg F3D] [90] Current objective function: 0.787868 = (wSIM)0.793708 - (wBE)1.43e-04 - (wJAC)5.70e-03 [+ 0.114299 mm]
[NiftyReg F3D] [98] Current objective function: 0.788271 = (wSIM)0.794049 - (wBE)2.03e-04 - (wJAC)5.58e-03 [+ 0.114299 mm]
[NiftyReg F3D] [108] Current objective function: 0.788661 = (wSIM)0.794452 - (wBE)1.87e-04 - (wJAC)5.60e-03 [+ 0.134337 mm]
[NiftyReg F3D] [116] Current objective function: 0.788688 = (wSIM)0.79448 - (wBE)1.86e-04 - (wJAC)5.61e-03 [+ 0.0167922 mm]
[NiftyReg F3D] [122] Current objective function: 0.788738 = (wSIM)0.794525 - (wBE)1.88e-04 - (wJAC)5.60e-03 [+ 0.0352635 mm]
[NiftyReg F3D] [130] Current objective function: 0.788818 = (wSIM)0.794585 - (wBE)1.94e-04 - (wJAC)5.57e-03 [+ 0.079387 mm]
[NiftyReg F3D] [137] Current objective function: 0.788901 = (wSIM)0.794648 - (wBE)2.07e-04 - (wJAC)5.54e-03 [+ 0.079387 mm]
[NiftyReg F3D] [144] Current objective function: 0.788977 = (wSIM)0.7947 - (wBE)2.32e-04 - (wJAC)5.49e-03 [+ 0.079387 mm]
[NiftyReg F3D] [153] Current objective function: 0.789174 = (wSIM)0.794891 - (wBE)2.49e-04 - (wJAC)5.47e-03 [+ 0.0848449 mm]
[NiftyReg F3D] [160] Current objective function: 0.789182 = (wSIM)0.794877 - (wBE)3.03e-04 - (wJAC)5.39e-03 [+ 0.0848449 mm]
[NiftyReg F3D] [167] Current objective function: 0.789295 = (wSIM)0.794973 - (wBE)3.19e-04 - (wJAC)5.36e-03 [+ 0.0848449 mm]
[NiftyReg F3D] [174] Current objective function: 0.789473 = (wSIM)0.795138 - (wBE)3.32e-04 - (wJAC)5.33e-03 [+ 0.0848449 mm]
[NiftyReg F3D] [181] Current objective function: 0.789569 = (wSIM)0.795233 - (wBE)3.40e-04 - (wJAC)5.32e-03 [+ 0.0848449 mm]
[NiftyReg F3D] [190] Current objective function: 0.789662 = (wSIM)0.795325 - (wBE)3.78e-04 - (wJAC)5.29e-03 [+ 0.0965111 mm]
[NiftyReg F3D] [200] Current objective function: 0.789888 = (wSIM)0.795535 - (wBE)3.89e-04 - (wJAC)5.26e-03 [+ 0.126701 mm]
[NiftyReg F3D] [209] Current objective function: 0.789896 = (wSIM)0.79554 - (wBE)3.92e-04 - (wJAC)5.25e-03 [+ 0.020193 mm]
[NiftyReg F3D] [217] Current objective function: 0.790025 = (wSIM)0.795672 - (wBE)3.98e-04 - (wJAC)5.25e-03 [+ 0.0668387 mm]
[NiftyReg F3D] [224] Current objective function: 0.790027 = (wSIM)0.795671 - (wBE)4.08e-04 - (wJAC)5.24e-03 [+ 0.0668387 mm]
[NiftyReg F3D] [231] Current objective function: 0.790099 = (wSIM)0.795733 - (wBE)4.25e-04 - (wJAC)5.21e-03 [+ 0.0668387 mm]
[NiftyReg F3D] [238] Current objective function: 0.790149 = (wSIM)0.79578 - (wBE)4.41e-04 - (wJAC)5.19e-03 [+ 0.0668387 mm]
[NiftyReg F3D] [245] Current objective function: 0.790209 = (wSIM)0.795841 - (wBE)4.75e-04 - (wJAC)5.16e-03 [+ 0.0668387 mm]
[NiftyReg F3D] [254] Current objective function: 0.790332 = (wSIM)0.795968 - (wBE)5.43e-04 - (wJAC)5.09e-03 [+ 0.113709 mm]
[NiftyReg F3D] [264] Current objective function: 0.790604 = (wSIM)0.796235 - (wBE)6.02e-04 - (wJAC)5.03e-03 [+ 0.121918 mm]
[NiftyReg F3D] [272] Current objective function: 0.790655 = (wSIM)0.796286 - (wBE)6.36e-04 - (wJAC)5.00e-03 [+ 0.0304794 mm]
[NiftyReg F3D] [279] Current objective function: 0.790823 = (wSIM)0.796462 - (wBE)6.59e-04 - (wJAC)4.98e-03 [+ 0.0640068 mm]
[NiftyReg F3D] [286] Current objective function: 0.790836 = (wSIM)0.796477 - (wBE)6.74e-04 - (wJAC)4.97e-03 [+ 0.0160017 mm]
[NiftyReg F3D] [292] Current objective function: 0.790861 = (wSIM)0.796495 - (wBE)6.69e-04 - (wJAC)4.97e-03 [+ 0.0336036 mm]
[NiftyReg F3D] [297] Current objective function: 0.790861 = (wSIM)0.796495 - (wBE)6.69e-04 - (wJAC)4.97e-03 [+ 0 mm]
[NiftyReg F3D] Current registration level done
[NiftyReg F3D] --------------------------------------------------
[NiftyReg F3D] Registration Performed in 5 min 56 sec
[NiftyReg F3D] Have a good day !

Output of reg_resample -ref /data/testdata_AIDA/proc_data/sub-SPsV1c1m3/ses-P5/anat/sub-SPsV1c1m3_ses-P5_T2wBiasBet.nii.gz -flo /aida/lib/average_template_50.nii.gz -cpp /data/testdata_AIDA/proc_data/sub-SPsV1c1m3/ses-P5/anat/sub-SPsV1c1m3_ses-P5_T2wBiasBetMatrixBspline.nii -res /data/testdata_AIDA/proc_data/sub-SPsV1c1m3/ses-P5/anat/sub-SPsV1c1m3_ses-P5_T2wBiasBet_TemplateAllen.nii.gz:

* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * *
Command line:
 reg_resample -ref /data/testdata_AIDA/proc_data/sub-SPsV1c1m3/ses-P5/anat/sub-SPsV1c1m3_ses-P5_T2wBiasBet.nii.gz -flo /aida/lib/average_template_50.nii.gz -cpp /data/testdata_AIDA/proc_data/sub-SPsV1c1m3/ses-P5/anat/sub-SPsV1c1m3_ses-P5_T2wBiasBetMatrixBspline.nii -res /data/testdata_AIDA/proc_data/sub-SPsV1c1m3/ses-P5/anat/sub-SPsV1c1m3_ses-P5_T2wBiasBet_TemplateAllen.nii.gz

Parameters
Reference image name: /data/testdata_AIDA/proc_data/sub-SPsV1c1m3/ses-P5/anat/sub-SPsV1c1m3_ses-P5_T2wBiasBet.nii.gz
	256x256x48 voxels, 1 volumes
	0.0683594x0.0683594x0.3 mm
Floating image name: /aida/lib/average_template_50.nii.gz
	228x160x264 voxels, 1 volumes
	0.05x0.05x0.05 mm
* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * *

[NiftyReg] Resampled image has been saved: /data/testdata_AIDA/proc_data/sub-SPsV1c1m3/ses-P5/anat/sub-SPsV1c1m3_ses-P5_T2wBiasBet_TemplateAllen.nii.gz

Output of reg_resample -ref /data/testdata_AIDA/proc_data/sub-SPsV1c1m3/ses-P5/anat/sub-SPsV1c1m3_ses-P5_T2wBiasBet.nii.gz -flo /aida/lib/annoVolume.nii.gz -inter 0 -cpp /data/testdata_AIDA/proc_data/sub-SPsV1c1m3/ses-P5/anat/sub-SPsV1c1m3_ses-P5_T2wBiasBetMatrixBspline.nii -res /data/testdata_AIDA/proc_data/sub-SPsV1c1m3/ses-P5/anat/sub-SPsV1c1m3_ses-P5_T2wBiasBet_Anno_parental.nii.gz:

* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * *
Command line:
 reg_resample -ref /data/testdata_AIDA/proc_data/sub-SPsV1c1m3/ses-P5/anat/sub-SPsV1c1m3_ses-P5_T2wBiasBet.nii.gz -flo /aida/lib/annoVolume.nii.gz -inter 0 -cpp /data/testdata_AIDA/proc_data/sub-SPsV1c1m3/ses-P5/anat/sub-SPsV1c1m3_ses-P5_T2wBiasBetMatrixBspline.nii -res /data/testdata_AIDA/proc_data/sub-SPsV1c1m3/ses-P5/anat/sub-SPsV1c1m3_ses-P5_T2wBiasBet_Anno_parental.nii.gz

Parameters
Reference image name: /data/testdata_AIDA/proc_data/sub-SPsV1c1m3/ses-P5/anat/sub-SPsV1c1m3_ses-P5_T2wBiasBet.nii.gz
	256x256x48 voxels, 1 volumes
	0.0683594x0.0683594x0.3 mm
Floating image name: /aida/lib/annoVolume.nii.gz
	228x160x264 voxels, 1 volumes
	0.05x0.05x0.05 mm
* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * *

[NiftyReg] Resampled image has been saved: /data/testdata_AIDA/proc_data/sub-SPsV1c1m3/ses-P5/anat/sub-SPsV1c1m3_ses-P5_T2wBiasBet_Anno_parental.nii.gz

Output of reg_resample -ref /data/testdata_AIDA/proc_data/sub-SPsV1c1m3/ses-P5/anat/sub-SPsV1c1m3_ses-P5_T2wBiasBet.nii.gz -flo /aida/lib/annoVolume+2000_rsfMRI.nii.gz -inter 0 -cpp /data/testdata_AIDA/proc_data/sub-SPsV1c1m3/ses-P5/anat/sub-SPsV1c1m3_ses-P5_T2wBiasBetMatrixBspline.nii -res /data/testdata_AIDA/proc_data/sub-SPsV1c1m3/ses-P5/anat/sub-SPsV1c1m3_ses-P5_T2wBiasBet_AnnoSplit_parental.nii.gz:

* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * *
Command line:
 reg_resample -ref /data/testdata_AIDA/proc_data/sub-SPsV1c1m3/ses-P5/anat/sub-SPsV1c1m3_ses-P5_T2wBiasBet.nii.gz -flo /aida/lib/annoVolume+2000_rsfMRI.nii.gz -inter 0 -cpp /data/testdata_AIDA/proc_data/sub-SPsV1c1m3/ses-P5/anat/sub-SPsV1c1m3_ses-P5_T2wBiasBetMatrixBspline.nii -res /data/testdata_AIDA/proc_data/sub-SPsV1c1m3/ses-P5/anat/sub-SPsV1c1m3_ses-P5_T2wBiasBet_AnnoSplit_parental.nii.gz

Parameters
Reference image name: /data/testdata_AIDA/proc_data/sub-SPsV1c1m3/ses-P5/anat/sub-SPsV1c1m3_ses-P5_T2wBiasBet.nii.gz
	256x256x48 voxels, 1 volumes
	0.0683594x0.0683594x0.3 mm
Floating image name: /aida/lib/annoVolume+2000_rsfMRI.nii.gz
	228x160x264 voxels, 1 volumes
	0.05x0.05x0.05 mm
* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * *

[NiftyReg] Resampled image has been saved: /data/testdata_AIDA/proc_data/sub-SPsV1c1m3/ses-P5/anat/sub-SPsV1c1m3_ses-P5_T2wBiasBet_AnnoSplit_parental.nii.gz

Output of reg_resample -ref /data/testdata_AIDA/proc_data/sub-SPsV1c1m3/ses-P5/anat/sub-SPsV1c1m3_ses-P5_T2wBiasBet.nii.gz -flo /aida/lib/annotation_50CHANGEDanno.nii.gz -inter 0 -cpp /data/testdata_AIDA/proc_data/sub-SPsV1c1m3/ses-P5/anat/sub-SPsV1c1m3_ses-P5_T2wBiasBetMatrixBspline.nii -res /data/testdata_AIDA/proc_data/sub-SPsV1c1m3/ses-P5/anat/sub-SPsV1c1m3_ses-P5_T2wBiasBet_Anno.nii.gz:

* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * *
Command line:
 reg_resample -ref /data/testdata_AIDA/proc_data/sub-SPsV1c1m3/ses-P5/anat/sub-SPsV1c1m3_ses-P5_T2wBiasBet.nii.gz -flo /aida/lib/annotation_50CHANGEDanno.nii.gz -inter 0 -cpp /data/testdata_AIDA/proc_data/sub-SPsV1c1m3/ses-P5/anat/sub-SPsV1c1m3_ses-P5_T2wBiasBetMatrixBspline.nii -res /data/testdata_AIDA/proc_data/sub-SPsV1c1m3/ses-P5/anat/sub-SPsV1c1m3_ses-P5_T2wBiasBet_Anno.nii.gz

Parameters
Reference image name: /data/testdata_AIDA/proc_data/sub-SPsV1c1m3/ses-P5/anat/sub-SPsV1c1m3_ses-P5_T2wBiasBet.nii.gz
	256x256x48 voxels, 1 volumes
	0.0683594x0.0683594x0.3 mm
Floating image name: /aida/lib/annotation_50CHANGEDanno.nii.gz
	228x160x264 voxels, 1 volumes
	0.05x0.05x0.05 mm
* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * *

[NiftyReg] Resampled image has been saved: /data/testdata_AIDA/proc_data/sub-SPsV1c1m3/ses-P5/anat/sub-SPsV1c1m3_ses-P5_T2wBiasBet_Anno.nii.gz

Output of reg_resample -ref /data/testdata_AIDA/proc_data/sub-SPsV1c1m3/ses-P5/anat/sub-SPsV1c1m3_ses-P5_T2wBiasBet.nii.gz -flo /aida/lib/ARA_annotationR+2000.nii.gz -inter 0 -cpp /data/testdata_AIDA/proc_data/sub-SPsV1c1m3/ses-P5/anat/sub-SPsV1c1m3_ses-P5_T2wBiasBetMatrixBspline.nii -res /data/testdata_AIDA/proc_data/sub-SPsV1c1m3/ses-P5/anat/sub-SPsV1c1m3_ses-P5_T2wBiasBet_AnnoSplit.nii.gz:

* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * *
Command line:
 reg_resample -ref /data/testdata_AIDA/proc_data/sub-SPsV1c1m3/ses-P5/anat/sub-SPsV1c1m3_ses-P5_T2wBiasBet.nii.gz -flo /aida/lib/ARA_annotationR+2000.nii.gz -inter 0 -cpp /data/testdata_AIDA/proc_data/sub-SPsV1c1m3/ses-P5/anat/sub-SPsV1c1m3_ses-P5_T2wBiasBetMatrixBspline.nii -res /data/testdata_AIDA/proc_data/sub-SPsV1c1m3/ses-P5/anat/sub-SPsV1c1m3_ses-P5_T2wBiasBet_AnnoSplit.nii.gz

Parameters
Reference image name: /data/testdata_AIDA/proc_data/sub-SPsV1c1m3/ses-P5/anat/sub-SPsV1c1m3_ses-P5_T2wBiasBet.nii.gz
	256x256x48 voxels, 1 volumes
	0.0683594x0.0683594x0.3 mm
Floating image name: /aida/lib/ARA_annotationR+2000.nii.gz
	228x160x264 voxels, 1 volumes
	0.05x0.05x0.05 mm
* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * *

[NiftyReg] Resampled image has been saved: /data/testdata_AIDA/proc_data/sub-SPsV1c1m3/ses-P5/anat/sub-SPsV1c1m3_ses-P5_T2wBiasBet_AnnoSplit.nii.gz

Registration completed