Notice: '/data/testdata_AIDA/proc_data/sub-SPsT1c2m3/ses-P28/anat/sub-SPsT1c2m3_ses-P28_T2wBiasBet.nii.gz' has no defined reference (stroke) mask - will proceed without.
Output of reg_aladin -ref /data/testdata_AIDA/proc_data/sub-SPsT1c2m3/ses-P28/anat/sub-SPsT1c2m3_ses-P28_T2wBiasBet.nii.gz -flo /aida/lib/NP_template_sc0.nii.gz -res /data/testdata_AIDA/proc_data/sub-SPsT1c2m3/ses-P28/anat/sub-SPsT1c2m3_ses-P28_T2wBiasBet_TemplateAff.nii.gz -aff /data/testdata_AIDA/proc_data/sub-SPsT1c2m3/ses-P28/anat/sub-SPsT1c2m3_ses-P28_T2wBiasBetMatrixAff.txt:

[NiftyReg ALADIN] Command line:
	 reg_aladin -ref /data/testdata_AIDA/proc_data/sub-SPsT1c2m3/ses-P28/anat/sub-SPsT1c2m3_ses-P28_T2wBiasBet.nii.gz -flo /aida/lib/NP_template_sc0.nii.gz -res /data/testdata_AIDA/proc_data/sub-SPsT1c2m3/ses-P28/anat/sub-SPsT1c2m3_ses-P28_T2wBiasBet_TemplateAff.nii.gz -aff /data/testdata_AIDA/proc_data/sub-SPsT1c2m3/ses-P28/anat/sub-SPsT1c2m3_ses-P28_T2wBiasBetMatrixAff.txt

[reg_aladin_sym] Parameters
[reg_aladin_sym] Reference image name: /data/testdata_AIDA/proc_data/sub-SPsT1c2m3/ses-P28/anat/sub-SPsT1c2m3_ses-P28_T2wBiasBet.nii.gz
[reg_aladin_sym] 	256x256x48 voxels
[reg_aladin_sym] 	0.0683594x0.0683594x0.3 mm
[reg_aladin_sym] Floating image name: /aida/lib/NP_template_sc0.nii.gz
[reg_aladin_sym] 	228x160x264 voxels
[reg_aladin_sym] 	0.05x0.05x0.05 mm
[reg_aladin_sym] Maximum iteration number: 5 (10 during the first level)
[reg_aladin_sym] Percentage of blocks: 50 %
* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * *
[reg_aladin_sym] Current level 1 / 3
[reg_aladin_sym] reference image size: 	64x64x48 voxels	0.273438x0.273438x0.3 mm
[reg_aladin_sym] floating image size: 	57x40x66 voxels	0.2x0.2x0.2 mm
[reg_aladin_sym] Block size = [4 4 4]
* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * *
[reg_aladin_sym] Forward Block number = [16 16 12]
[reg_aladin_sym] Backward Block number = [15 10 17]
[reg_aladin_sym] Initial forward transformation matrix::
1	0	0	-8.725
0	1	0	-11.325
0	0	1	-4.575
0	0	0	1
[reg_aladin_sym] Initial backward transformation matrix::
1	0	0	8.725
0	1	0	11.325
0	0	1	4.575
0	0	0	1
* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * *
[reg_aladin_sym] Final forward transformation matrix::
1.02027	-0.0666332	0.0129656	-8.12867
0.0624034	1.16177	0.0370105	-14.5273
0.00344527	-0.0581555	0.967937	-3.74336
0	0	0	1
[reg_aladin_sym] Final backward transformation matrix::
0.976801	0.0552635	-0.0151974	8.68604
-0.0522571	0.856154	-0.0320363	11.8929
-0.00661653	0.0512427	1.03125	4.55099
0	0	0	1
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
[reg_aladin_sym] Current level 2 / 3
[reg_aladin_sym] reference image size: 	128x128x48 voxels	0.136719x0.136719x0.3 mm
[reg_aladin_sym] floating image size: 	114x80x132 voxels	0.1x0.1x0.1 mm
[reg_aladin_sym] Block size = [4 4 4]
* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * *
[reg_aladin_sym] Forward Block number = [32 32 12]
[reg_aladin_sym] Backward Block number = [29 20 33]
[reg_aladin_sym] Initial forward transformation matrix::
1.02027	-0.0666332	0.0129656	-8.12867
0.0624034	1.16177	0.0370105	-14.5273
0.00344527	-0.0581555	0.967937	-3.74336
0	0	0	1
[reg_aladin_sym] Initial backward transformation matrix::
0.976801	0.0552635	-0.0151974	8.68604
-0.0522571	0.856154	-0.0320363	11.8929
-0.00661653	0.0512427	1.03125	4.55099
0	0	0	1
* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * *
[reg_aladin_sym] Final forward transformation matrix::
1.01885	-0.0648916	0.00432447	-8.0723
0.0631551	1.16784	0.0303983	-14.514
0.00830997	-0.032525	0.961775	-3.97423
0	0	0	1
[reg_aladin_sym] Final backward transformation matrix::
0.978187	0.0541835	-0.00611082	8.65836
-0.0526328	0.852616	-0.0267116	11.8439
-0.0102317	0.0283653	1.03889	4.4579
0	0	0	1
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
[reg_aladin_sym] Current level 3 / 3
[reg_aladin_sym] reference image size: 	256x256x48 voxels	0.0683594x0.0683594x0.3 mm
[reg_aladin_sym] floating image size: 	228x160x264 voxels	0.05x0.05x0.05 mm
[reg_aladin_sym] Block size = [4 4 4]
* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * *
[reg_aladin_sym] Forward Block number = [64 64 12]
[reg_aladin_sym] Backward Block number = [57 40 66]
[reg_aladin_sym] Initial forward transformation matrix::
1.01885	-0.0648916	0.00432447	-8.0723
0.0631551	1.16784	0.0303983	-14.514
0.00830997	-0.032525	0.961775	-3.97423
0	0	0	1
[reg_aladin_sym] Initial backward transformation matrix::
0.978187	0.0541835	-0.00611082	8.65836
-0.0526328	0.852616	-0.0267116	11.8439
-0.0102317	0.0283653	1.03889	4.4579
0	0	0	1
* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * *
[reg_aladin_sym] Final forward transformation matrix::
1.01825	-0.0644665	0.00625877	-8.07329
0.0637333	1.16481	0.0264947	-14.4705
0.00866466	-0.0441315	0.962338	-3.85559
0	0	0	1
[reg_aladin_sym] Final backward transformation matrix::
0.978767	0.0538724	-0.00784881	8.65117
-0.0532976	0.854677	-0.023184	11.848
-0.0112567	0.0387093	1.03814	4.47192
0	0	0	1
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Registration Performed in 2 min 31 sec
Have a good day !

Output of reg_aladin -ref /aida/lib/average_template_50.nii.gz -flo /data/testdata_AIDA/proc_data/sub-SPsT1c2m3/ses-P28/anat/sub-SPsT1c2m3_ses-P28_T2wBiasBet.nii.gz -res /data/testdata_AIDA/proc_data/sub-SPsT1c2m3/ses-P28/anat/sub-SPsT1c2m3_ses-P28_T2wBiasBet_IncidenceData.nii.gz -aff /data/testdata_AIDA/proc_data/sub-SPsT1c2m3/ses-P28/anat/sub-SPsT1c2m3_ses-P28_T2wBiasBetMatrixInv.txt:

[NiftyReg ALADIN] Command line:
	 reg_aladin -ref /aida/lib/average_template_50.nii.gz -flo /data/testdata_AIDA/proc_data/sub-SPsT1c2m3/ses-P28/anat/sub-SPsT1c2m3_ses-P28_T2wBiasBet.nii.gz -res /data/testdata_AIDA/proc_data/sub-SPsT1c2m3/ses-P28/anat/sub-SPsT1c2m3_ses-P28_T2wBiasBet_IncidenceData.nii.gz -aff /data/testdata_AIDA/proc_data/sub-SPsT1c2m3/ses-P28/anat/sub-SPsT1c2m3_ses-P28_T2wBiasBetMatrixInv.txt

[reg_aladin_sym] Parameters
[reg_aladin_sym] Reference image name: /aida/lib/average_template_50.nii.gz
[reg_aladin_sym] 	228x160x264 voxels
[reg_aladin_sym] 	0.05x0.05x0.05 mm
[reg_aladin_sym] Floating image name: /data/testdata_AIDA/proc_data/sub-SPsT1c2m3/ses-P28/anat/sub-SPsT1c2m3_ses-P28_T2wBiasBet.nii.gz
[reg_aladin_sym] 	256x256x48 voxels
[reg_aladin_sym] 	0.0683594x0.0683594x0.3 mm
[reg_aladin_sym] Maximum iteration number: 5 (10 during the first level)
[reg_aladin_sym] Percentage of blocks: 50 %
* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * *
[reg_aladin_sym] Current level 1 / 3
[reg_aladin_sym] reference image size: 	57x40x66 voxels	0.2x0.2x0.2 mm
[reg_aladin_sym] floating image size: 	64x64x48 voxels	0.273438x0.273438x0.3 mm
[reg_aladin_sym] Block size = [4 4 4]
* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * *
[reg_aladin_sym] Forward Block number = [15 10 17]
[reg_aladin_sym] Backward Block number = [16 16 12]
[reg_aladin_sym] Initial forward transformation matrix::
1	0	0	8.725
0	1	0	11.325
0	0	1	4.575
0	0	0	1
[reg_aladin_sym] Initial backward transformation matrix::
1	0	0	-8.725
0	1	0	-11.325
0	0	1	-4.575
0	0	0	1
* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * *
[reg_aladin_sym] Final forward transformation matrix::
0.998175	0.0642153	-0.0126479	8.69219
-0.0722853	0.886431	-0.0352739	11.9979
-0.000361145	0.0380125	1.0674	4.42801
0	0	0	1
[reg_aladin_sym] Final backward transformation matrix::
0.996574	-0.0725979	0.00940962	-7.83306
0.0811655	1.12061	0.0379942	-14.3187
-0.00255331	-0.0399322	0.935509	-3.64115
0	0	0	1
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
[reg_aladin_sym] Current level 2 / 3
[reg_aladin_sym] reference image size: 	114x80x132 voxels	0.1x0.1x0.1 mm
[reg_aladin_sym] floating image size: 	128x128x48 voxels	0.136719x0.136719x0.3 mm
[reg_aladin_sym] Block size = [4 4 4]
* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * *
[reg_aladin_sym] Forward Block number = [29 20 33]
[reg_aladin_sym] Backward Block number = [32 32 12]
[reg_aladin_sym] Initial forward transformation matrix::
0.998175	0.0642153	-0.0126479	8.69219
-0.0722853	0.886431	-0.0352739	11.9979
-0.000361145	0.0380125	1.0674	4.42801
0	0	0	1
[reg_aladin_sym] Initial backward transformation matrix::
0.996574	-0.0725979	0.00940962	-7.83306
0.0811655	1.12061	0.0379942	-14.3187
-0.00255331	-0.0399322	0.935509	-3.64115
0	0	0	1
* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * *
[reg_aladin_sym] Final forward transformation matrix::
0.992792	0.0652954	-0.0131411	8.68461
-0.0682159	0.880668	-0.0248107	11.9763
-0.00574154	0.0553174	1.0291	4.51954
0	0	0	1
[reg_aladin_sym] Final backward transformation matrix::
1.00217	-0.0749942	0.0109892	-7.85497
0.0776673	1.12797	0.0281863	-14.3108
0.00141644	-0.0610505	0.970269	-3.66631
0	0	0	1
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
[reg_aladin_sym] Current level 3 / 3
[reg_aladin_sym] reference image size: 	228x160x264 voxels	0.05x0.05x0.05 mm
[reg_aladin_sym] floating image size: 	256x256x48 voxels	0.0683594x0.0683594x0.3 mm
[reg_aladin_sym] Block size = [4 4 4]
* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * *
[reg_aladin_sym] Forward Block number = [57 40 66]
[reg_aladin_sym] Backward Block number = [64 64 12]
[reg_aladin_sym] Initial forward transformation matrix::
0.992792	0.0652954	-0.0131411	8.68461
-0.0682159	0.880668	-0.0248107	11.9763
-0.00574154	0.0553174	1.0291	4.51954
0	0	0	1
[reg_aladin_sym] Initial backward transformation matrix::
1.00217	-0.0749942	0.0109892	-7.85497
0.0776673	1.12797	0.0281863	-14.3108
0.00141644	-0.0610505	0.970269	-3.66631
0	0	0	1
* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * *
[reg_aladin_sym] Final forward transformation matrix::
0.990297	0.0709386	-0.0137207	8.7035
-0.0638561	0.88508	-0.0241835	11.973
-0.0168092	0.0544608	1.03465	4.51573
0	0	0	1
[reg_aladin_sym] Final backward transformation matrix::
1.00475	-0.0812334	0.0114255	-7.82387
0.0728315	1.12233	0.0271988	-14.1944
0.0124899	-0.0603959	0.965268	-3.74447
0	0	0	1
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Registration Performed in 2 min 47 sec
Have a good day !

Output of reg_f3d -ref /data/testdata_AIDA/proc_data/sub-SPsT1c2m3/ses-P28/anat/sub-SPsT1c2m3_ses-P28_T2wBiasBet.nii.gz -flo /aida/lib/NP_template_sc0.nii.gz -sx 3 -sy 3 -sz 3 -jl 0.3 -res /data/testdata_AIDA/proc_data/sub-SPsT1c2m3/ses-P28/anat/sub-SPsT1c2m3_ses-P28_T2wBiasBet_Template.nii.gz -cpp /data/testdata_AIDA/proc_data/sub-SPsT1c2m3/ses-P28/anat/sub-SPsT1c2m3_ses-P28_T2wBiasBetMatrixBspline.nii -aff /data/testdata_AIDA/proc_data/sub-SPsT1c2m3/ses-P28/anat/sub-SPsT1c2m3_ses-P28_T2wBiasBetMatrixAff.txt:

[NiftyReg F3D] Command line:
	 reg_f3d -ref /data/testdata_AIDA/proc_data/sub-SPsT1c2m3/ses-P28/anat/sub-SPsT1c2m3_ses-P28_T2wBiasBet.nii.gz -flo /aida/lib/NP_template_sc0.nii.gz -sx 3 -sy 3 -sz 3 -jl 0.3 -res /data/testdata_AIDA/proc_data/sub-SPsT1c2m3/ses-P28/anat/sub-SPsT1c2m3_ses-P28_T2wBiasBet_Template.nii.gz -cpp /data/testdata_AIDA/proc_data/sub-SPsT1c2m3/ses-P28/anat/sub-SPsT1c2m3_ses-P28_T2wBiasBetMatrixBspline.nii -aff /data/testdata_AIDA/proc_data/sub-SPsT1c2m3/ses-P28/anat/sub-SPsT1c2m3_ses-P28_T2wBiasBetMatrixAff.txt

[NiftyReg F3D] OpenMP is used with 8 thread(s)
[NiftyReg F3D] **************************************************
[NiftyReg F3D] INPUT PARAMETERS
[NiftyReg F3D] **************************************************
[NiftyReg F3D] Reference image:
[NiftyReg F3D] 	* name: /data/testdata_AIDA/proc_data/sub-SPsT1c2m3/ses-P28/anat/sub-SPsT1c2m3_ses-P28_T2wBiasBet.nii.gz
[NiftyReg F3D] 	* image dimension: 256 x 256 x 48 x 1
[NiftyReg F3D] 	* image spacing: 0.0683594 x 0.0683594 x 0.3 mm
[NiftyReg F3D] 	* intensity threshold for timepoint 1/1: [-3.4e+38 3.4e+38]
[NiftyReg F3D] 	* gaussian smoothing sigma: 0
[NiftyReg F3D]
[NiftyReg F3D] Floating image:
[NiftyReg F3D] 	* name: /aida/lib/NP_template_sc0.nii.gz
[NiftyReg F3D] 	* image dimension: 228 x 160 x 264 x 1
[NiftyReg F3D] 	* image spacing: 0.05 x 0.05 x 0.05 mm
[NiftyReg F3D] 	* intensity threshold for timepoint 1/1: [-3.4e+38 3.4e+38]
[NiftyReg F3D] 	* gaussian smoothing sigma: 0
[NiftyReg F3D]
[NiftyReg F3D] Warped image padding value: nan
[NiftyReg F3D]
[NiftyReg F3D] Level number: 3
[NiftyReg F3D]
[NiftyReg F3D] Maximum iteration number per level: 300
[NiftyReg F3D]
[NiftyReg F3D] Final spacing in mm: 3 3 3
[NiftyReg F3D]
[NiftyReg F3D] The NMI is used as a similarity measure.
[NiftyReg F3D] Similarity measure term weight: 0.695
[NiftyReg F3D]
[NiftyReg F3D] Bending energy penalty term weight: 0.005
[NiftyReg F3D]
[NiftyReg F3D] Linear energy penalty term weights: 0 0
[NiftyReg F3D]
[NiftyReg F3D] L2 norm of the displacement penalty term weights: 0
[NiftyReg F3D]
[NiftyReg F3D] Jacobian-based penalty term weight: 0.3
[NiftyReg F3D] 	* Jacobian-based penalty term is approximated
[NiftyReg F3D] **************************************************
[NiftyReg F3D] Current level: 1 / 3
[NiftyReg F3D] Current reference image
[NiftyReg F3D] 	* image dimension: 64 x 64 x 48 x 1
[NiftyReg F3D] 	* image spacing: 0.273438 x 0.273438 x 0.3 mm
[NiftyReg F3D] Current floating image
[NiftyReg F3D] 	* image dimension: 57 x 40 x 66 x 1
[NiftyReg F3D] 	* image spacing: 0.2 x 0.2 x 0.2 mm
[NiftyReg F3D] Current control point image
[NiftyReg F3D] 	* image dimension: 5 x 5 x 5
[NiftyReg F3D] 	* image spacing: 12 x 12 x 12 mm
[NiftyReg F3D] Initial objective function: 0.79093 = (wSIM)0.796535 - (wBE)1.69313e-15 - (wLE)0 - (wL2)0 - (wJAC)0.00560418
[NiftyReg F3D] [9] Current objective function: 0.792289 = (wSIM)0.797988 - (wBE)7.00e-08 - (wJAC)5.70e-03 [+ 0.3 mm]
[NiftyReg F3D] [17] Current objective function: 0.792289 = (wSIM)0.797988 - (wBE)7.00e-08 - (wJAC)5.70e-03 [+ 0 mm]
[NiftyReg F3D] Current registration level done
[NiftyReg F3D] --------------------------------------------------
[NiftyReg F3D] **************************************************
[NiftyReg F3D] Current level: 2 / 3
[NiftyReg F3D] Current reference image
[NiftyReg F3D] 	* image dimension: 128 x 128 x 48 x 1
[NiftyReg F3D] 	* image spacing: 0.136719 x 0.136719 x 0.3 mm
[NiftyReg F3D] Current floating image
[NiftyReg F3D] 	* image dimension: 114 x 80 x 132 x 1
[NiftyReg F3D] 	* image spacing: 0.1 x 0.1 x 0.1 mm
[NiftyReg F3D] Current control point image
[NiftyReg F3D] 	* image dimension: 6 x 6 x 6
[NiftyReg F3D] 	* image spacing: 6 x 6 x 6 mm
[NiftyReg F3D] Initial objective function: 0.785755 = (wSIM)0.791584 - (wBE)1.35091e-07 - (wLE)0 - (wL2)0 - (wJAC)0.00582904
[NiftyReg F3D] [9] Current objective function: 0.789594 = (wSIM)0.795334 - (wBE)5.35e-07 - (wJAC)5.74e-03 [+ 0.3 mm]
[NiftyReg F3D] [17] Current objective function: 0.789594 = (wSIM)0.795334 - (wBE)5.35e-07 - (wJAC)5.74e-03 [+ 0 mm]
[NiftyReg F3D] Current registration level done
[NiftyReg F3D] --------------------------------------------------
[NiftyReg F3D] **************************************************
[NiftyReg F3D] Current level: 3 / 3
[NiftyReg F3D] Current reference image
[NiftyReg F3D] 	* image dimension: 256 x 256 x 48 x 1
[NiftyReg F3D] 	* image spacing: 0.0683594 x 0.0683594 x 0.3 mm
[NiftyReg F3D] Current floating image
[NiftyReg F3D] 	* image dimension: 228 x 160 x 264 x 1
[NiftyReg F3D] 	* image spacing: 0.05 x 0.05 x 0.05 mm
[NiftyReg F3D] Current control point image
[NiftyReg F3D] 	* image dimension: 9 x 9 x 8
[NiftyReg F3D] 	* image spacing: 3 x 3 x 3 mm
[NiftyReg F3D] Initial objective function: 0.781696 = (wSIM)0.787467 - (wBE)8.26567e-07 - (wLE)0 - (wL2)0 - (wJAC)0.00577023
[NiftyReg F3D] [9] Current objective function: 0.784126 = (wSIM)0.789894 - (wBE)6.84e-06 - (wJAC)5.76e-03 [+ 0.3 mm]
[NiftyReg F3D] [18] Current objective function: 0.785143 = (wSIM)0.790925 - (wBE)3.91e-05 - (wJAC)5.74e-03 [+ 0.15 mm]
[NiftyReg F3D] [27] Current objective function: 0.78769 = (wSIM)0.7935 - (wBE)6.30e-05 - (wJAC)5.75e-03 [+ 0.2325 mm]
[NiftyReg F3D] [36] Current objective function: 0.788349 = (wSIM)0.794173 - (wBE)7.69e-05 - (wJAC)5.75e-03 [+ 0.11625 mm]
[NiftyReg F3D] [45] Current objective function: 0.788719 = (wSIM)0.794545 - (wBE)8.68e-05 - (wJAC)5.74e-03 [+ 0.0621211 mm]
[NiftyReg F3D] [54] Current objective function: 0.789295 = (wSIM)0.795112 - (wBE)9.55e-05 - (wJAC)5.72e-03 [+ 0.105684 mm]
[NiftyReg F3D] [63] Current objective function: 0.78969 = (wSIM)0.795479 - (wBE)1.10e-04 - (wJAC)5.68e-03 [+ 0.120215 mm]
[NiftyReg F3D] [71] Current objective function: 0.790183 = (wSIM)0.795937 - (wBE)1.30e-04 - (wJAC)5.62e-03 [+ 0.120215 mm]
[NiftyReg F3D] [80] Current objective function: 0.790439 = (wSIM)0.796177 - (wBE)1.67e-04 - (wJAC)5.57e-03 [+ 0.186333 mm]
[NiftyReg F3D] [89] Current objective function: 0.790596 = (wSIM)0.79636 - (wBE)2.39e-04 - (wJAC)5.53e-03 [+ 0.0931666 mm]
[NiftyReg F3D] [97] Current objective function: 0.790789 = (wSIM)0.796575 - (wBE)3.10e-04 - (wJAC)5.48e-03 [+ 0.0931666 mm]
[NiftyReg F3D] [105] Current objective function: 0.791347 = (wSIM)0.79716 - (wBE)4.06e-04 - (wJAC)5.41e-03 [+ 0.0931666 mm]
[NiftyReg F3D] [113] Current objective function: 0.791417 = (wSIM)0.797318 - (wBE)5.64e-04 - (wJAC)5.34e-03 [+ 0.0931666 mm]
[NiftyReg F3D] [122] Current objective function: 0.792005 = (wSIM)0.797927 - (wBE)5.75e-04 - (wJAC)5.35e-03 [+ 0.144408 mm]
[NiftyReg F3D] [130] Current objective function: 0.7921 = (wSIM)0.79802 - (wBE)5.80e-04 - (wJAC)5.34e-03 [+ 0.0361021 mm]
[NiftyReg F3D] [137] Current objective function: 0.792395 = (wSIM)0.798289 - (wBE)5.82e-04 - (wJAC)5.31e-03 [+ 0.0758143 mm]
[NiftyReg F3D] [144] Current objective function: 0.792549 = (wSIM)0.798416 - (wBE)5.84e-04 - (wJAC)5.28e-03 [+ 0.0758143 mm]
[NiftyReg F3D] [152] Current objective function: 0.792815 = (wSIM)0.798657 - (wBE)5.88e-04 - (wJAC)5.25e-03 [+ 0.117512 mm]
[NiftyReg F3D] [160] Current objective function: 0.79282 = (wSIM)0.798641 - (wBE)5.94e-04 - (wJAC)5.23e-03 [+ 0.0293781 mm]
[NiftyReg F3D] [167] Current objective function: 0.792956 = (wSIM)0.798771 - (wBE)5.96e-04 - (wJAC)5.22e-03 [+ 0.0616939 mm]
[NiftyReg F3D] [175] Current objective function: 0.792966 = (wSIM)0.798779 - (wBE)5.99e-04 - (wJAC)5.21e-03 [+ 0.0350884 mm]
[NiftyReg F3D] [182] Current objective function: 0.793032 = (wSIM)0.798847 - (wBE)6.06e-04 - (wJAC)5.21e-03 [+ 0.0399131 mm]
[NiftyReg F3D] [188] Current objective function: 0.793064 = (wSIM)0.798874 - (wBE)6.14e-04 - (wJAC)5.20e-03 [+ 0.0399131 mm]
[NiftyReg F3D] [197] Current objective function: 0.793186 = (wSIM)0.79897 - (wBE)6.24e-04 - (wJAC)5.16e-03 [+ 0.0868359 mm]
[NiftyReg F3D] [204] Current objective function: 0.793189 = (wSIM)0.79896 - (wBE)6.30e-04 - (wJAC)5.14e-03 [+ 0.0108545 mm]
[NiftyReg F3D] [211] Current objective function: 0.79324 = (wSIM)0.799022 - (wBE)6.27e-04 - (wJAC)5.15e-03 [+ 0.0260779 mm]
[NiftyReg F3D] [217] Current objective function: 0.793245 = (wSIM)0.79903 - (wBE)6.27e-04 - (wJAC)5.16e-03 [+ 0.00651948 mm]
[NiftyReg F3D] [223] Current objective function: 0.793282 = (wSIM)0.79906 - (wBE)6.30e-04 - (wJAC)5.15e-03 [+ 0.0215795 mm]
[NiftyReg F3D] [230] Current objective function: 0.793329 = (wSIM)0.799096 - (wBE)6.43e-04 - (wJAC)5.12e-03 [+ 0.0453169 mm]
[NiftyReg F3D] [237] Current objective function: 0.793335 = (wSIM)0.799095 - (wBE)6.70e-04 - (wJAC)5.09e-03 [+ 0.0453169 mm]
[NiftyReg F3D] [246] Current objective function: 0.793495 = (wSIM)0.799223 - (wBE)7.39e-04 - (wJAC)4.99e-03 [+ 0.149999 mm]
[NiftyReg F3D] [254] Current objective function: 0.793558 = (wSIM)0.799281 - (wBE)8.28e-04 - (wJAC)4.90e-03 [+ 0.0749994 mm]
[NiftyReg F3D] [262] Current objective function: 0.79377 = (wSIM)0.79951 - (wBE)9.30e-04 - (wJAC)4.81e-03 [+ 0.0853119 mm]
[NiftyReg F3D] [269] Current objective function: 0.793845 = (wSIM)0.799604 - (wBE)1.02e-03 - (wJAC)4.74e-03 [+ 0.0426559 mm]
[NiftyReg F3D] [277] Current objective function: 0.793992 = (wSIM)0.799733 - (wBE)1.03e-03 - (wJAC)4.71e-03 [+ 0.0895775 mm]
[NiftyReg F3D] [286] Current objective function: 0.794042 = (wSIM)0.799765 - (wBE)1.06e-03 - (wJAC)4.67e-03 [+ 0.0509472 mm]
[NiftyReg F3D] [294] Current objective function: 0.794213 = (wSIM)0.799948 - (wBE)1.05e-03 - (wJAC)4.68e-03 [+ 0.0649576 mm]
[NiftyReg F3D] [300] Current objective function: 0.794213 = (wSIM)0.799948 - (wBE)1.05e-03 - (wJAC)4.68e-03 [+ 0 mm]
[NiftyReg F3D] Current registration level done
[NiftyReg F3D] --------------------------------------------------
[NiftyReg F3D] Registration Performed in 5 min 36 sec
[NiftyReg F3D] Have a good day !

Output of reg_resample -ref /data/testdata_AIDA/proc_data/sub-SPsT1c2m3/ses-P28/anat/sub-SPsT1c2m3_ses-P28_T2wBiasBet.nii.gz -flo /aida/lib/average_template_50.nii.gz -cpp /data/testdata_AIDA/proc_data/sub-SPsT1c2m3/ses-P28/anat/sub-SPsT1c2m3_ses-P28_T2wBiasBetMatrixBspline.nii -res /data/testdata_AIDA/proc_data/sub-SPsT1c2m3/ses-P28/anat/sub-SPsT1c2m3_ses-P28_T2wBiasBet_TemplateAllen.nii.gz:

* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * *
Command line:
 reg_resample -ref /data/testdata_AIDA/proc_data/sub-SPsT1c2m3/ses-P28/anat/sub-SPsT1c2m3_ses-P28_T2wBiasBet.nii.gz -flo /aida/lib/average_template_50.nii.gz -cpp /data/testdata_AIDA/proc_data/sub-SPsT1c2m3/ses-P28/anat/sub-SPsT1c2m3_ses-P28_T2wBiasBetMatrixBspline.nii -res /data/testdata_AIDA/proc_data/sub-SPsT1c2m3/ses-P28/anat/sub-SPsT1c2m3_ses-P28_T2wBiasBet_TemplateAllen.nii.gz

Parameters
Reference image name: /data/testdata_AIDA/proc_data/sub-SPsT1c2m3/ses-P28/anat/sub-SPsT1c2m3_ses-P28_T2wBiasBet.nii.gz
	256x256x48 voxels, 1 volumes
	0.0683594x0.0683594x0.3 mm
Floating image name: /aida/lib/average_template_50.nii.gz
	228x160x264 voxels, 1 volumes
	0.05x0.05x0.05 mm
* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * *

[NiftyReg] Resampled image has been saved: /data/testdata_AIDA/proc_data/sub-SPsT1c2m3/ses-P28/anat/sub-SPsT1c2m3_ses-P28_T2wBiasBet_TemplateAllen.nii.gz

Output of reg_resample -ref /data/testdata_AIDA/proc_data/sub-SPsT1c2m3/ses-P28/anat/sub-SPsT1c2m3_ses-P28_T2wBiasBet.nii.gz -flo /aida/lib/annoVolume.nii.gz -inter 0 -cpp /data/testdata_AIDA/proc_data/sub-SPsT1c2m3/ses-P28/anat/sub-SPsT1c2m3_ses-P28_T2wBiasBetMatrixBspline.nii -res /data/testdata_AIDA/proc_data/sub-SPsT1c2m3/ses-P28/anat/sub-SPsT1c2m3_ses-P28_T2wBiasBet_Anno_parental.nii.gz:

* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * *
Command line:
 reg_resample -ref /data/testdata_AIDA/proc_data/sub-SPsT1c2m3/ses-P28/anat/sub-SPsT1c2m3_ses-P28_T2wBiasBet.nii.gz -flo /aida/lib/annoVolume.nii.gz -inter 0 -cpp /data/testdata_AIDA/proc_data/sub-SPsT1c2m3/ses-P28/anat/sub-SPsT1c2m3_ses-P28_T2wBiasBetMatrixBspline.nii -res /data/testdata_AIDA/proc_data/sub-SPsT1c2m3/ses-P28/anat/sub-SPsT1c2m3_ses-P28_T2wBiasBet_Anno_parental.nii.gz

Parameters
Reference image name: /data/testdata_AIDA/proc_data/sub-SPsT1c2m3/ses-P28/anat/sub-SPsT1c2m3_ses-P28_T2wBiasBet.nii.gz
	256x256x48 voxels, 1 volumes
	0.0683594x0.0683594x0.3 mm
Floating image name: /aida/lib/annoVolume.nii.gz
	228x160x264 voxels, 1 volumes
	0.05x0.05x0.05 mm
* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * *

[NiftyReg] Resampled image has been saved: /data/testdata_AIDA/proc_data/sub-SPsT1c2m3/ses-P28/anat/sub-SPsT1c2m3_ses-P28_T2wBiasBet_Anno_parental.nii.gz

Output of reg_resample -ref /data/testdata_AIDA/proc_data/sub-SPsT1c2m3/ses-P28/anat/sub-SPsT1c2m3_ses-P28_T2wBiasBet.nii.gz -flo /aida/lib/annoVolume+2000_rsfMRI.nii.gz -inter 0 -cpp /data/testdata_AIDA/proc_data/sub-SPsT1c2m3/ses-P28/anat/sub-SPsT1c2m3_ses-P28_T2wBiasBetMatrixBspline.nii -res /data/testdata_AIDA/proc_data/sub-SPsT1c2m3/ses-P28/anat/sub-SPsT1c2m3_ses-P28_T2wBiasBet_AnnoSplit_parental.nii.gz:

* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * *
Command line:
 reg_resample -ref /data/testdata_AIDA/proc_data/sub-SPsT1c2m3/ses-P28/anat/sub-SPsT1c2m3_ses-P28_T2wBiasBet.nii.gz -flo /aida/lib/annoVolume+2000_rsfMRI.nii.gz -inter 0 -cpp /data/testdata_AIDA/proc_data/sub-SPsT1c2m3/ses-P28/anat/sub-SPsT1c2m3_ses-P28_T2wBiasBetMatrixBspline.nii -res /data/testdata_AIDA/proc_data/sub-SPsT1c2m3/ses-P28/anat/sub-SPsT1c2m3_ses-P28_T2wBiasBet_AnnoSplit_parental.nii.gz

Parameters
Reference image name: /data/testdata_AIDA/proc_data/sub-SPsT1c2m3/ses-P28/anat/sub-SPsT1c2m3_ses-P28_T2wBiasBet.nii.gz
	256x256x48 voxels, 1 volumes
	0.0683594x0.0683594x0.3 mm
Floating image name: /aida/lib/annoVolume+2000_rsfMRI.nii.gz
	228x160x264 voxels, 1 volumes
	0.05x0.05x0.05 mm
* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * *

[NiftyReg] Resampled image has been saved: /data/testdata_AIDA/proc_data/sub-SPsT1c2m3/ses-P28/anat/sub-SPsT1c2m3_ses-P28_T2wBiasBet_AnnoSplit_parental.nii.gz

Output of reg_resample -ref /data/testdata_AIDA/proc_data/sub-SPsT1c2m3/ses-P28/anat/sub-SPsT1c2m3_ses-P28_T2wBiasBet.nii.gz -flo /aida/lib/annotation_50CHANGEDanno.nii.gz -inter 0 -cpp /data/testdata_AIDA/proc_data/sub-SPsT1c2m3/ses-P28/anat/sub-SPsT1c2m3_ses-P28_T2wBiasBetMatrixBspline.nii -res /data/testdata_AIDA/proc_data/sub-SPsT1c2m3/ses-P28/anat/sub-SPsT1c2m3_ses-P28_T2wBiasBet_Anno.nii.gz:

* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * *
Command line:
 reg_resample -ref /data/testdata_AIDA/proc_data/sub-SPsT1c2m3/ses-P28/anat/sub-SPsT1c2m3_ses-P28_T2wBiasBet.nii.gz -flo /aida/lib/annotation_50CHANGEDanno.nii.gz -inter 0 -cpp /data/testdata_AIDA/proc_data/sub-SPsT1c2m3/ses-P28/anat/sub-SPsT1c2m3_ses-P28_T2wBiasBetMatrixBspline.nii -res /data/testdata_AIDA/proc_data/sub-SPsT1c2m3/ses-P28/anat/sub-SPsT1c2m3_ses-P28_T2wBiasBet_Anno.nii.gz

Parameters
Reference image name: /data/testdata_AIDA/proc_data/sub-SPsT1c2m3/ses-P28/anat/sub-SPsT1c2m3_ses-P28_T2wBiasBet.nii.gz
	256x256x48 voxels, 1 volumes
	0.0683594x0.0683594x0.3 mm
Floating image name: /aida/lib/annotation_50CHANGEDanno.nii.gz
	228x160x264 voxels, 1 volumes
	0.05x0.05x0.05 mm
* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * *

[NiftyReg] Resampled image has been saved: /data/testdata_AIDA/proc_data/sub-SPsT1c2m3/ses-P28/anat/sub-SPsT1c2m3_ses-P28_T2wBiasBet_Anno.nii.gz

Output of reg_resample -ref /data/testdata_AIDA/proc_data/sub-SPsT1c2m3/ses-P28/anat/sub-SPsT1c2m3_ses-P28_T2wBiasBet.nii.gz -flo /aida/lib/ARA_annotationR+2000.nii.gz -inter 0 -cpp /data/testdata_AIDA/proc_data/sub-SPsT1c2m3/ses-P28/anat/sub-SPsT1c2m3_ses-P28_T2wBiasBetMatrixBspline.nii -res /data/testdata_AIDA/proc_data/sub-SPsT1c2m3/ses-P28/anat/sub-SPsT1c2m3_ses-P28_T2wBiasBet_AnnoSplit.nii.gz:

* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * *
Command line:
 reg_resample -ref /data/testdata_AIDA/proc_data/sub-SPsT1c2m3/ses-P28/anat/sub-SPsT1c2m3_ses-P28_T2wBiasBet.nii.gz -flo /aida/lib/ARA_annotationR+2000.nii.gz -inter 0 -cpp /data/testdata_AIDA/proc_data/sub-SPsT1c2m3/ses-P28/anat/sub-SPsT1c2m3_ses-P28_T2wBiasBetMatrixBspline.nii -res /data/testdata_AIDA/proc_data/sub-SPsT1c2m3/ses-P28/anat/sub-SPsT1c2m3_ses-P28_T2wBiasBet_AnnoSplit.nii.gz

Parameters
Reference image name: /data/testdata_AIDA/proc_data/sub-SPsT1c2m3/ses-P28/anat/sub-SPsT1c2m3_ses-P28_T2wBiasBet.nii.gz
	256x256x48 voxels, 1 volumes
	0.0683594x0.0683594x0.3 mm
Floating image name: /aida/lib/ARA_annotationR+2000.nii.gz
	228x160x264 voxels, 1 volumes
	0.05x0.05x0.05 mm
* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * *

[NiftyReg] Resampled image has been saved: /data/testdata_AIDA/proc_data/sub-SPsT1c2m3/ses-P28/anat/sub-SPsT1c2m3_ses-P28_T2wBiasBet_AnnoSplit.nii.gz

Registration completed