Orientation:('R', 'A', 'S')
fslmaths /data/testdata_AIDA/proc_data/sub-SPsT1c13m1/ses-P21/func/rs-fMRI_niiData/sub-SPsT1c13m1_ses-P21_EPI.nii.gz -Tmean /data/testdata_AIDA/proc_data/sub-SPsT1c13m1/ses-P21/func/rs-fMRI_niiData/sub-SPsT1c13m1_ses-P21_EPImean.nii.gz
bet /data/testdata_AIDA/proc_data/sub-SPsT1c13m1/ses-P21/func/rs-fMRI_niiData/fslScaleTemp.nii.gz /data/testdata_AIDA/proc_data/sub-SPsT1c13m1/ses-P21/func/rs-fMRI_niiData/sub-SPsT1c13m1_ses-P21_EPImeanBet.nii.gz -f 0.35 -m -r 45 -R -g 0.10
fslmaths /data/testdata_AIDA/proc_data/sub-SPsT1c13m1/ses-P21/func/rs-fMRI_niiData/fslScaleTemp.nii.gz -mas /data/testdata_AIDA/proc_data/sub-SPsT1c13m1/ses-P21/func/rs-fMRI_niiData/sub-SPsT1c13m1_ses-P21_EPImeanBet_mask.nii.gz /data/testdata_AIDA/proc_data/sub-SPsT1c13m1/ses-P21/func/rs-fMRI_niiData/sub-SPsT1c13m1_ses-P21_EPIBET.nii.gz
fslsplit /data/testdata_AIDA/proc_data/sub-SPsT1c13m1/ses-P21/func/rs-fMRI_niiData/fslScaleTemp.nii.gz sub-SPsT1c13m1_ses-P21_EPI -z
fslmerge -z /data/testdata_AIDA/proc_data/sub-SPsT1c13m1/ses-P21/func/rs-fMRI_niiData/sub-SPsT1c13m1_ses-P21_EPI_mcf.nii.gz /data/testdata_AIDA/proc_data/sub-SPsT1c13m1/ses-P21/func/rs-fMRI_mcf/sub-SPsT1c13m1_ses-P21_EPI_mcf.mat/sub-SPsT1c13m1_ses-P21_EPI0000.nii.gz /data/testdata_AIDA/proc_data/sub-SPsT1c13m1/ses-P21/func/rs-fMRI_mcf/sub-SPsT1c13m1_ses-P21_EPI_mcf.mat/sub-SPsT1c13m1_ses-P21_EPI0001.nii.gz /data/testdata_AIDA/proc_data/sub-SPsT1c13m1/ses-P21/func/rs-fMRI_mcf/sub-SPsT1c13m1_ses-P21_EPI_mcf.mat/sub-SPsT1c13m1_ses-P21_EPI0002.nii.gz /data/testdata_AIDA/proc_data/sub-SPsT1c13m1/ses-P21/func/rs-fMRI_mcf/sub-SPsT1c13m1_ses-P21_EPI_mcf.mat/sub-SPsT1c13m1_ses-P21_EPI0003.nii.gz /data/testdata_AIDA/proc_data/sub-SPsT1c13m1/ses-P21/func/rs-fMRI_mcf/sub-SPsT1c13m1_ses-P21_EPI_mcf.mat/sub-SPsT1c13m1_ses-P21_EPI0004.nii.gz /data/testdata_AIDA/proc_data/sub-SPsT1c13m1/ses-P21/func/rs-fMRI_mcf/sub-SPsT1c13m1_ses-P21_EPI_mcf.mat/sub-SPsT1c13m1_ses-P21_EPI0005.nii.gz /data/testdata_AIDA/proc_data/sub-SPsT1c13m1/ses-P21/func/rs-fMRI_mcf/sub-SPsT1c13m1_ses-P21_EPI_mcf.mat/sub-SPsT1c13m1_ses-P21_EPI0006.nii.gz /data/testdata_AIDA/proc_data/sub-SPsT1c13m1/ses-P21/func/rs-fMRI_mcf/sub-SPsT1c13m1_ses-P21_EPI_mcf.mat/sub-SPsT1c13m1_ses-P21_EPI0007.nii.gz /data/testdata_AIDA/proc_data/sub-SPsT1c13m1/ses-P21/func/rs-fMRI_mcf/sub-SPsT1c13m1_ses-P21_EPI_mcf.mat/sub-SPsT1c13m1_ses-P21_EPI0008.nii.gz /data/testdata_AIDA/proc_data/sub-SPsT1c13m1/ses-P21/func/rs-fMRI_mcf/sub-SPsT1c13m1_ses-P21_EPI_mcf.mat/sub-SPsT1c13m1_ses-P21_EPI0009.nii.gz /data/testdata_AIDA/proc_data/sub-SPsT1c13m1/ses-P21/func/rs-fMRI_mcf/sub-SPsT1c13m1_ses-P21_EPI_mcf.mat/sub-SPsT1c13m1_ses-P21_EPI0010.nii.gz /data/testdata_AIDA/proc_data/sub-SPsT1c13m1/ses-P21/func/rs-fMRI_mcf/sub-SPsT1c13m1_ses-P21_EPI_mcf.mat/sub-SPsT1c13m1_ses-P21_EPI0011.nii.gz /data/testdata_AIDA/proc_data/sub-SPsT1c13m1/ses-P21/func/rs-fMRI_mcf/sub-SPsT1c13m1_ses-P21_EPI_mcf.mat/sub-SPsT1c13m1_ses-P21_EPI0012.nii.gz /data/testdata_AIDA/proc_data/sub-SPsT1c13m1/ses-P21/func/rs-fMRI_mcf/sub-SPsT1c13m1_ses-P21_EPI_mcf.mat/sub-SPsT1c13m1_ses-P21_EPI0013.nii.gz /data/testdata_AIDA/proc_data/sub-SPsT1c13m1/ses-P21/func/rs-fMRI_mcf/sub-SPsT1c13m1_ses-P21_EPI_mcf.mat/sub-SPsT1c13m1_ses-P21_EPI0014.nii.gz /data/testdata_AIDA/proc_data/sub-SPsT1c13m1/ses-P21/func/rs-fMRI_mcf/sub-SPsT1c13m1_ses-P21_EPI_mcf.mat/sub-SPsT1c13m1_ses-P21_EPI0015.nii.gz /data/testdata_AIDA/proc_data/sub-SPsT1c13m1/ses-P21/func/rs-fMRI_mcf/sub-SPsT1c13m1_ses-P21_EPI_mcf.mat/sub-SPsT1c13m1_ses-P21_EPI0016.nii.gz /data/testdata_AIDA/proc_data/sub-SPsT1c13m1/ses-P21/func/rs-fMRI_mcf/sub-SPsT1c13m1_ses-P21_EPI_mcf.mat/sub-SPsT1c13m1_ses-P21_EPI0017.nii.gz /data/testdata_AIDA/proc_data/sub-SPsT1c13m1/ses-P21/func/rs-fMRI_mcf/sub-SPsT1c13m1_ses-P21_EPI_mcf.mat/sub-SPsT1c13m1_ses-P21_EPI0018.nii.gz /data/testdata_AIDA/proc_data/sub-SPsT1c13m1/ses-P21/func/rs-fMRI_mcf/sub-SPsT1c13m1_ses-P21_EPI_mcf.mat/sub-SPsT1c13m1_ses-P21_EPI0019.nii.gz
fslmaths /data/testdata_AIDA/proc_data/sub-SPsT1c13m1/ses-P21/func/rs-fMRI_niiData/sub-SPsT1c13m1_ses-P21_EPI_mcf.nii.gz -Tmean /data/testdata_AIDA/proc_data/sub-SPsT1c13m1/ses-P21/func/rs-fMRI_niiData/sub-SPsT1c13m1_ses-P21_EPI_mcfmean.nii.gz
Error: '/data/testdata_AIDA/proc_data/Physio' has no related physio data for scan 16.I32.
Error: Processing not possible, because either there is no folder called Physio or the related physio data for the scan is missing there.
Starting Regression without slice time correction:
Regression started (wait!)
fslroi /data/testdata_AIDA/proc_data/sub-SPsT1c13m1/ses-P21/func/rs-fMRI_niiData/sub-SPsT1c13m1_ses-P21_EPI_mcf_fslScaleTemp.nii.gz /data/testdata_AIDA/proc_data/sub-SPsT1c13m1/ses-P21/func/rs-fMRI_niiData/sub-SPsT1c13m1_ses-P21_EPI_mcf_f.nii.gz 5 -1
No regression with physio data!
fslmaths /data/testdata_AIDA/proc_data/sub-SPsT1c13m1/ses-P21/func/regr/sub-SPsT1c13m1_ses-P21_EPI_mcf_f_RGR.nii.gz -Tmean /data/testdata_AIDA/proc_data/sub-SPsT1c13m1/ses-P21/func/regr/mean2.nii.gz
bet /data/testdata_AIDA/proc_data/sub-SPsT1c13m1/ses-P21/func/regr/mean2_fslScaleTemp.nii.gz /data/testdata_AIDA/proc_data/sub-SPsT1c13m1/ses-P21/func/regr/mean2Bet.nii.gz -f 0.35 -m -r 45 -R -g 0.10
fslmaths /data/testdata_AIDA/proc_data/sub-SPsT1c13m1/ses-P21/func/regr/sub-SPsT1c13m1_ses-P21_EPI_mcf_f_RGR.nii.gz -mas /data/testdata_AIDA/proc_data/sub-SPsT1c13m1/ses-P21/func/regr/mean2Bet_mask.nii.gz /data/testdata_AIDA/proc_data/sub-SPsT1c13m1/ses-P21/func/regr/sub-SPsT1c13m1_ses-P21_EPI_mcf_f_RGR.nii.gz
fslstats /data/testdata_AIDA/proc_data/sub-SPsT1c13m1/ses-P21/func/regr/sub-SPsT1c13m1_ses-P21_EPI_mcf_f_RGR.nii.gz -p 98
fslmaths /data/testdata_AIDA/proc_data/sub-SPsT1c13m1/ses-P21/func/regr/sub-SPsT1c13m1_ses-P21_EPI_mcf_f_RGR.nii.gz -thr 102.1429749000 -Tmin -bin /data/testdata_AIDA/proc_data/sub-SPsT1c13m1/ses-P21/func/regr/mask.nii.gz -odt char
fslstats /data/testdata_AIDA/proc_data/sub-SPsT1c13m1/ses-P21/func/regr/sub-SPsT1c13m1_ses-P21_EPI_mcf_f_RGR.nii.gz  -k /data/testdata_AIDA/proc_data/sub-SPsT1c13m1/ses-P21/func/regr/mask.nii.gz -p 50  
fslmaths /data/testdata_AIDA/proc_data/sub-SPsT1c13m1/ses-P21/func/regr/mask.nii.gz -dilF /data/testdata_AIDA/proc_data/sub-SPsT1c13m1/ses-P21/func/regr/mask.nii.gz
fslmaths /data/testdata_AIDA/proc_data/sub-SPsT1c13m1/ses-P21/func/regr/sub-SPsT1c13m1_ses-P21_EPI_mcf_f_RGR.nii.gz -mas /data/testdata_AIDA/proc_data/sub-SPsT1c13m1/ses-P21/func/regr/mask.nii.gz /data/testdata_AIDA/proc_data/sub-SPsT1c13m1/ses-P21/func/regr/sub-SPsT1c13m1_ses-P21_EPI_mcf_f_RGRthres.nii.gz
fslmaths /data/testdata_AIDA/proc_data/sub-SPsT1c13m1/ses-P21/func/regr/sub-SPsT1c13m1_ses-P21_EPI_mcf_f_RGRthres.nii.gz -Tmean /data/testdata_AIDA/proc_data/sub-SPsT1c13m1/ses-P21/func/regr/mean_func.nii.gz
susan /data/testdata_AIDA/proc_data/sub-SPsT1c13m1/ses-P21/func/regr/sub-SPsT1c13m1_ses-P21_EPI_mcf_f_RGRthres_fslScaleTemp.nii.gz 569.4900510000 1.2739827004 2 1 1 /data/testdata_AIDA/proc_data/sub-SPsT1c13m1/ses-P21/func/regr/mean_func_fslScaleTemp.nii.gz 569.4900510000 /data/testdata_AIDA/proc_data/sub-SPsT1c13m1/ses-P21/func/regr/sub-SPsT1c13m1_ses-P21_EPI_mcf_f_SRGR.nii.gz
fslmaths /data/testdata_AIDA/proc_data/sub-SPsT1c13m1/ses-P21/func/regr/sub-SPsT1c13m1_ses-P21_EPI_mcf_f_SRGR.nii.gz -mas /data/testdata_AIDA/proc_data/sub-SPsT1c13m1/ses-P21/func/regr/mask.nii.gz /data/testdata_AIDA/proc_data/sub-SPsT1c13m1/ses-P21/func/regr/sub-SPsT1c13m1_ses-P21_EPI_mcf_f_SRGR_smooth.nii.gz
fslmaths /data/testdata_AIDA/proc_data/sub-SPsT1c13m1/ses-P21/func/regr/sub-SPsT1c13m1_ses-P21_EPI_mcf_f_SRGR_smooth.nii.gz -mul 17.55956927 /data/testdata_AIDA/proc_data/sub-SPsT1c13m1/ses-P21/func/regr/sub-SPsT1c13m1_ses-P21_EPI_mcf_f_SRGR_smooth_intnorm.nii.gz
fslmaths /data/testdata_AIDA/proc_data/sub-SPsT1c13m1/ses-P21/func/regr/sub-SPsT1c13m1_ses-P21_EPI_mcf_f_SRGR_smooth_intnorm.nii.gz -Tmean /data/testdata_AIDA/proc_data/sub-SPsT1c13m1/ses-P21/func/regr/tempMean.nii.gz
fslmaths /data/testdata_AIDA/proc_data/sub-SPsT1c13m1/ses-P21/func/regr/sub-SPsT1c13m1_ses-P21_EPI_mcf_f_SRGR_smooth_intnorm.nii.gz -bptf 35.211268 -1.000000 -add /data/testdata_AIDA/proc_data/sub-SPsT1c13m1/ses-P21/func/regr/tempMean.nii.gz /data/testdata_AIDA/proc_data/sub-SPsT1c13m1/ses-P21/func/regr/sub-SPsT1c13m1_ses-P21_EPI_mcf_f_SFRGR.nii.gz/opt/env/lib/python3.7/site-packages/scipy/stats/stats.py:4023: PearsonRConstantInputWarning: An input array is constant; the correlation coefficient is not defined.
  warnings.warn(PearsonRConstantInputWarning())

fslmaths /data/testdata_AIDA/proc_data/sub-SPsT1c13m1/ses-P21/func/regr/sub-SPsT1c13m1_ses-P21_EPI_mcf_f_SFRGR.nii.gz -thrp 17.0000000000 -Tmean -bin /data/testdata_AIDA/proc_data/sub-SPsT1c13m1/ses-P21/func/regr/sub-SPsT1c13m1_ses-P21_EPI_mcf_f_SFRGR_thres_mask.nii.gz -odt float
Regression completed!
sfrgr_file /data/testdata_AIDA/proc_data/sub-SPsT1c13m1/ses-P21/func/regr/sub-SPsT1c13m1_ses-P21_EPI_mcf_f_SFRGR.nii.gz
Copy Atlas Data and generate seed ROIs
Output: /data/testdata_AIDA/proc_data/sub-SPsT1c13m1/ses-P21/func/Seed_ROIs.nii.gz
Copy Atlas Data and generate seed ROIs
Output: /data/testdata_AIDA/proc_data/sub-SPsT1c13m1/ses-P21/func/Seed_ROIs.nii.gz