Notice: '/data/testdata_AIDA/proc_data/sub-SPsT1c13m1/ses-P21/anat/sub-SPsT1c13m1_ses-P21_T2wBiasBet.nii.gz' has no defined reference (stroke) mask - will proceed without. Output of reg_aladin -ref /data/testdata_AIDA/proc_data/sub-SPsT1c13m1/ses-P21/anat/sub-SPsT1c13m1_ses-P21_T2wBiasBet.nii.gz -flo /aida/lib/NP_template_sc0.nii.gz -res /data/testdata_AIDA/proc_data/sub-SPsT1c13m1/ses-P21/anat/sub-SPsT1c13m1_ses-P21_T2wBiasBet_TemplateAff.nii.gz -aff /data/testdata_AIDA/proc_data/sub-SPsT1c13m1/ses-P21/anat/sub-SPsT1c13m1_ses-P21_T2wBiasBetMatrixAff.txt: [NiftyReg ALADIN] Command line: reg_aladin -ref /data/testdata_AIDA/proc_data/sub-SPsT1c13m1/ses-P21/anat/sub-SPsT1c13m1_ses-P21_T2wBiasBet.nii.gz -flo /aida/lib/NP_template_sc0.nii.gz -res /data/testdata_AIDA/proc_data/sub-SPsT1c13m1/ses-P21/anat/sub-SPsT1c13m1_ses-P21_T2wBiasBet_TemplateAff.nii.gz -aff /data/testdata_AIDA/proc_data/sub-SPsT1c13m1/ses-P21/anat/sub-SPsT1c13m1_ses-P21_T2wBiasBetMatrixAff.txt [reg_aladin_sym] Parameters [reg_aladin_sym] Reference image name: /data/testdata_AIDA/proc_data/sub-SPsT1c13m1/ses-P21/anat/sub-SPsT1c13m1_ses-P21_T2wBiasBet.nii.gz [reg_aladin_sym] 256x256x48 voxels [reg_aladin_sym] 0.0683594x0.0683594x0.3 mm [reg_aladin_sym] Floating image name: /aida/lib/NP_template_sc0.nii.gz [reg_aladin_sym] 228x160x264 voxels [reg_aladin_sym] 0.05x0.05x0.05 mm [reg_aladin_sym] Maximum iteration number: 5 (10 during the first level) [reg_aladin_sym] Percentage of blocks: 50 % * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * [reg_aladin_sym] Current level 1 / 3 [reg_aladin_sym] reference image size: 64x64x48 voxels 0.273438x0.273438x0.3 mm [reg_aladin_sym] floating image size: 57x40x66 voxels 0.2x0.2x0.2 mm [reg_aladin_sym] Block size = [4 4 4] * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * [reg_aladin_sym] Forward Block number = [16 16 12] [reg_aladin_sym] Backward Block number = [15 10 17] [reg_aladin_sym] Initial forward transformation matrix:: 1 0 0 -8.725 0 1 0 -11.325 0 0 1 -4.575 0 0 0 1 [reg_aladin_sym] Initial backward transformation matrix:: 1 0 0 8.725 0 1 0 11.325 0 0 1 4.575 0 0 0 1 * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * [reg_aladin_sym] Final forward transformation matrix:: 1.02023 0.0246196 0.0471831 -9.52603 -0.0155512 1.12928 -0.0964649 -11.7347 -0.0618759 0.0890259 0.963316 -4.41215 0 0 0 1 [reg_aladin_sym] Final backward transformation matrix:: 0.976895 -0.0173881 -0.0495895 8.88309 0.0186654 0.878252 0.0870325 10.8678 0.0610232 -0.0822815 1.02685 4.14639 0 0 0 1 - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - [reg_aladin_sym] Current level 2 / 3 [reg_aladin_sym] reference image size: 128x128x48 voxels 0.136719x0.136719x0.3 mm [reg_aladin_sym] floating image size: 114x80x132 voxels 0.1x0.1x0.1 mm [reg_aladin_sym] Block size = [4 4 4] * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * [reg_aladin_sym] Forward Block number = [32 32 12] [reg_aladin_sym] Backward Block number = [29 20 33] [reg_aladin_sym] Initial forward transformation matrix:: 1.02023 0.0246196 0.0471831 -9.52603 -0.0155512 1.12928 -0.0964649 -11.7347 -0.0618759 0.0890259 0.963316 -4.41215 0 0 0 1 [reg_aladin_sym] Initial backward transformation matrix:: 0.976895 -0.0173881 -0.0495895 8.88309 0.0186654 0.878252 0.0870325 10.8678 0.0610232 -0.0822815 1.02685 4.14639 0 0 0 1 * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * [reg_aladin_sym] Final forward transformation matrix:: 1.01265 0.0269735 0.0393553 -9.43407 -0.0136979 1.14382 -0.09167 -11.8727 -0.050393 0.0625713 0.974686 -4.39159 0 0 0 1 [reg_aladin_sym] Final backward transformation matrix:: 0.985147 -0.0209479 -0.0417479 8.86189 0.0157985 0.869455 0.0811351 10.8281 0.0499196 -0.0568989 1.0186 4.2687 0 0 0 1 - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - [reg_aladin_sym] Current level 3 / 3 [reg_aladin_sym] reference image size: 256x256x48 voxels 0.0683594x0.0683594x0.3 mm [reg_aladin_sym] floating image size: 228x160x264 voxels 0.05x0.05x0.05 mm [reg_aladin_sym] Block size = [4 4 4] * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * [reg_aladin_sym] Forward Block number = [64 64 12] [reg_aladin_sym] Backward Block number = [57 40 66] [reg_aladin_sym] Initial forward transformation matrix:: 1.01265 0.0269735 0.0393553 -9.43407 -0.0136979 1.14382 -0.09167 -11.8727 -0.050393 0.0625713 0.974686 -4.39159 0 0 0 1 [reg_aladin_sym] Initial backward transformation matrix:: 0.985147 -0.0209479 -0.0417479 8.86189 0.0157985 0.869455 0.0811351 10.8281 0.0499196 -0.0568989 1.0186 4.2687 0 0 0 1 * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * [reg_aladin_sym] Final forward transformation matrix:: 1.0101 0.0232244 0.0414122 -9.38601 -0.015195 1.13784 -0.0945123 -11.7931 -0.0566372 0.0551175 0.987718 -4.31299 0 0 0 1 [reg_aladin_sym] Final backward transformation matrix:: 0.987314 -0.018063 -0.0431237 8.86793 0.0178048 0.874475 0.0829298 10.8376 0.0556205 -0.0498339 1.00533 4.27036 0 0 0 1 - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Registration Performed in 2 min 31 sec Have a good day ! Output of reg_aladin -ref /aida/lib/average_template_50.nii.gz -flo /data/testdata_AIDA/proc_data/sub-SPsT1c13m1/ses-P21/anat/sub-SPsT1c13m1_ses-P21_T2wBiasBet.nii.gz -res /data/testdata_AIDA/proc_data/sub-SPsT1c13m1/ses-P21/anat/sub-SPsT1c13m1_ses-P21_T2wBiasBet_IncidenceData.nii.gz -aff /data/testdata_AIDA/proc_data/sub-SPsT1c13m1/ses-P21/anat/sub-SPsT1c13m1_ses-P21_T2wBiasBetMatrixInv.txt: [NiftyReg ALADIN] Command line: reg_aladin -ref /aida/lib/average_template_50.nii.gz -flo /data/testdata_AIDA/proc_data/sub-SPsT1c13m1/ses-P21/anat/sub-SPsT1c13m1_ses-P21_T2wBiasBet.nii.gz -res /data/testdata_AIDA/proc_data/sub-SPsT1c13m1/ses-P21/anat/sub-SPsT1c13m1_ses-P21_T2wBiasBet_IncidenceData.nii.gz -aff /data/testdata_AIDA/proc_data/sub-SPsT1c13m1/ses-P21/anat/sub-SPsT1c13m1_ses-P21_T2wBiasBetMatrixInv.txt [reg_aladin_sym] Parameters [reg_aladin_sym] Reference image name: /aida/lib/average_template_50.nii.gz [reg_aladin_sym] 228x160x264 voxels [reg_aladin_sym] 0.05x0.05x0.05 mm [reg_aladin_sym] Floating image name: /data/testdata_AIDA/proc_data/sub-SPsT1c13m1/ses-P21/anat/sub-SPsT1c13m1_ses-P21_T2wBiasBet.nii.gz [reg_aladin_sym] 256x256x48 voxels [reg_aladin_sym] 0.0683594x0.0683594x0.3 mm [reg_aladin_sym] Maximum iteration number: 5 (10 during the first level) [reg_aladin_sym] Percentage of blocks: 50 % * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * [reg_aladin_sym] Current level 1 / 3 [reg_aladin_sym] reference image size: 57x40x66 voxels 0.2x0.2x0.2 mm [reg_aladin_sym] floating image size: 64x64x48 voxels 0.273438x0.273438x0.3 mm [reg_aladin_sym] Block size = [4 4 4] * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * [reg_aladin_sym] Forward Block number = [15 10 17] [reg_aladin_sym] Backward Block number = [16 16 12] [reg_aladin_sym] Initial forward transformation matrix:: 1 0 0 8.725 0 1 0 11.325 0 0 1 4.575 0 0 0 1 [reg_aladin_sym] Initial backward transformation matrix:: 1 0 0 -8.725 0 1 0 -11.325 0 0 1 -4.575 0 0 0 1 * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * [reg_aladin_sym] Final forward transformation matrix:: 1.00107 -0.0162229 -0.0560843 8.88426 0.0164359 0.915436 0.0858778 11.0154 0.0614178 -0.0680761 1.0355 4.16224 0 0 0 1 [reg_aladin_sym] Final backward transformation matrix:: 0.99538 0.0215161 0.0521272 -9.29719 -0.0122572 1.08542 -0.0906817 -11.4699 -0.0598442 0.0700817 0.956668 -4.22218 0 0 0 1 - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - [reg_aladin_sym] Current level 2 / 3 [reg_aladin_sym] reference image size: 114x80x132 voxels 0.1x0.1x0.1 mm [reg_aladin_sym] floating image size: 128x128x48 voxels 0.136719x0.136719x0.3 mm [reg_aladin_sym] Block size = [4 4 4] * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * [reg_aladin_sym] Forward Block number = [29 20 33] [reg_aladin_sym] Backward Block number = [32 32 12] [reg_aladin_sym] Initial forward transformation matrix:: 1.00107 -0.0162229 -0.0560843 8.88426 0.0164359 0.915436 0.0858778 11.0154 0.0614178 -0.0680761 1.0355 4.16224 0 0 0 1 [reg_aladin_sym] Initial backward transformation matrix:: 0.99538 0.0215161 0.0521272 -9.29719 -0.0122572 1.08542 -0.0906817 -11.4699 -0.0598442 0.0700817 0.956668 -4.22218 0 0 0 1 * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * [reg_aladin_sym] Final forward transformation matrix:: 1.00353 -0.00496077 -0.055247 8.92287 0.00647737 0.900269 0.0911429 10.9602 0.0561761 -0.0419951 1.00431 4.25494 0 0 0 1 [reg_aladin_sym] Final backward transformation matrix:: 0.993408 0.00798934 0.0539224 -9.18105 -0.00151555 1.10608 -0.100463 -11.6819 -0.0556298 0.0458041 0.988495 -4.21163 0 0 0 1 - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - [reg_aladin_sym] Current level 3 / 3 [reg_aladin_sym] reference image size: 228x160x264 voxels 0.05x0.05x0.05 mm [reg_aladin_sym] floating image size: 256x256x48 voxels 0.0683594x0.0683594x0.3 mm [reg_aladin_sym] Block size = [4 4 4] * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * [reg_aladin_sym] Forward Block number = [57 40 66] [reg_aladin_sym] Backward Block number = [64 64 12] [reg_aladin_sym] Initial forward transformation matrix:: 1.00353 -0.00496077 -0.055247 8.92287 0.00647737 0.900269 0.0911429 10.9602 0.0561761 -0.0419951 1.00431 4.25494 0 0 0 1 [reg_aladin_sym] Initial backward transformation matrix:: 0.993408 0.00798934 0.0539224 -9.18105 -0.00151555 1.10608 -0.100463 -11.6819 -0.0556298 0.0458041 0.988495 -4.21163 0 0 0 1 * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * [reg_aladin_sym] Final forward transformation matrix:: 1.00176 -0.0101535 -0.0500625 8.89388 0.0123282 0.89563 0.0925611 10.9311 0.0553195 -0.0507149 1.01856 4.24715 0 0 0 1 [reg_aladin_sym] Final backward transformation matrix:: 0.995438 0.0139834 0.0476551 -9.20856 -0.00807314 1.1107 -0.101331 -11.6391 -0.0544654 0.0545431 0.97414 -4.24913 0 0 0 1 - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Registration Performed in 2 min 42 sec Have a good day ! Output of reg_f3d -ref /data/testdata_AIDA/proc_data/sub-SPsT1c13m1/ses-P21/anat/sub-SPsT1c13m1_ses-P21_T2wBiasBet.nii.gz -flo /aida/lib/NP_template_sc0.nii.gz -sx 3 -sy 3 -sz 3 -jl 0.3 -res /data/testdata_AIDA/proc_data/sub-SPsT1c13m1/ses-P21/anat/sub-SPsT1c13m1_ses-P21_T2wBiasBet_Template.nii.gz -cpp /data/testdata_AIDA/proc_data/sub-SPsT1c13m1/ses-P21/anat/sub-SPsT1c13m1_ses-P21_T2wBiasBetMatrixBspline.nii -aff /data/testdata_AIDA/proc_data/sub-SPsT1c13m1/ses-P21/anat/sub-SPsT1c13m1_ses-P21_T2wBiasBetMatrixAff.txt: [NiftyReg F3D] Command line: reg_f3d -ref /data/testdata_AIDA/proc_data/sub-SPsT1c13m1/ses-P21/anat/sub-SPsT1c13m1_ses-P21_T2wBiasBet.nii.gz -flo /aida/lib/NP_template_sc0.nii.gz -sx 3 -sy 3 -sz 3 -jl 0.3 -res /data/testdata_AIDA/proc_data/sub-SPsT1c13m1/ses-P21/anat/sub-SPsT1c13m1_ses-P21_T2wBiasBet_Template.nii.gz -cpp /data/testdata_AIDA/proc_data/sub-SPsT1c13m1/ses-P21/anat/sub-SPsT1c13m1_ses-P21_T2wBiasBetMatrixBspline.nii -aff /data/testdata_AIDA/proc_data/sub-SPsT1c13m1/ses-P21/anat/sub-SPsT1c13m1_ses-P21_T2wBiasBetMatrixAff.txt [NiftyReg F3D] OpenMP is used with 8 thread(s) [NiftyReg F3D] ************************************************** [NiftyReg F3D] INPUT PARAMETERS [NiftyReg F3D] ************************************************** [NiftyReg F3D] Reference image: [NiftyReg F3D] * name: /data/testdata_AIDA/proc_data/sub-SPsT1c13m1/ses-P21/anat/sub-SPsT1c13m1_ses-P21_T2wBiasBet.nii.gz [NiftyReg F3D] * image dimension: 256 x 256 x 48 x 1 [NiftyReg F3D] * image spacing: 0.0683594 x 0.0683594 x 0.3 mm [NiftyReg F3D] * intensity threshold for timepoint 1/1: [-3.4e+38 3.4e+38] [NiftyReg F3D] * gaussian smoothing sigma: 0 [NiftyReg F3D] [NiftyReg F3D] Floating image: [NiftyReg F3D] * name: /aida/lib/NP_template_sc0.nii.gz [NiftyReg F3D] * image dimension: 228 x 160 x 264 x 1 [NiftyReg F3D] * image spacing: 0.05 x 0.05 x 0.05 mm [NiftyReg F3D] * intensity threshold for timepoint 1/1: [-3.4e+38 3.4e+38] [NiftyReg F3D] * gaussian smoothing sigma: 0 [NiftyReg F3D] [NiftyReg F3D] Warped image padding value: nan [NiftyReg F3D] [NiftyReg F3D] Level number: 3 [NiftyReg F3D] [NiftyReg F3D] Maximum iteration number per level: 300 [NiftyReg F3D] [NiftyReg F3D] Final spacing in mm: 3 3 3 [NiftyReg F3D] [NiftyReg F3D] The NMI is used as a similarity measure. [NiftyReg F3D] Similarity measure term weight: 0.695 [NiftyReg F3D] [NiftyReg F3D] Bending energy penalty term weight: 0.005 [NiftyReg F3D] [NiftyReg F3D] Linear energy penalty term weights: 0 0 [NiftyReg F3D] [NiftyReg F3D] L2 norm of the displacement penalty term weights: 0 [NiftyReg F3D] [NiftyReg F3D] Jacobian-based penalty term weight: 0.3 [NiftyReg F3D] * Jacobian-based penalty term is approximated [NiftyReg F3D] ************************************************** [NiftyReg F3D] Current level: 1 / 3 [NiftyReg F3D] Current reference image [NiftyReg F3D] * image dimension: 64 x 64 x 48 x 1 [NiftyReg F3D] * image spacing: 0.273438 x 0.273438 x 0.3 mm [NiftyReg F3D] Current floating image [NiftyReg F3D] * image dimension: 57 x 40 x 66 x 1 [NiftyReg F3D] * image spacing: 0.2 x 0.2 x 0.2 mm [NiftyReg F3D] Current control point image [NiftyReg F3D] * image dimension: 5 x 5 x 5 [NiftyReg F3D] * image spacing: 12 x 12 x 12 mm [NiftyReg F3D] Initial objective function: 0.790208 = (wSIM)0.795608 - (wBE)1.77645e-15 - (wLE)0 - (wL2)0 - (wJAC)0.00540038 [NiftyReg F3D] [9] Current objective function: 0.792299 = (wSIM)0.797765 - (wBE)2.25e-08 - (wJAC)5.47e-03 [+ 0.15 mm] [NiftyReg F3D] [16] Current objective function: 0.792299 = (wSIM)0.797765 - (wBE)2.25e-08 - (wJAC)5.47e-03 [+ 0 mm] [NiftyReg F3D] Current registration level done [NiftyReg F3D] -------------------------------------------------- [NiftyReg F3D] ************************************************** [NiftyReg F3D] Current level: 2 / 3 [NiftyReg F3D] Current reference image [NiftyReg F3D] * image dimension: 128 x 128 x 48 x 1 [NiftyReg F3D] * image spacing: 0.136719 x 0.136719 x 0.3 mm [NiftyReg F3D] Current floating image [NiftyReg F3D] * image dimension: 114 x 80 x 132 x 1 [NiftyReg F3D] * image spacing: 0.1 x 0.1 x 0.1 mm [NiftyReg F3D] Current control point image [NiftyReg F3D] * image dimension: 6 x 6 x 6 [NiftyReg F3D] * image spacing: 6 x 6 x 6 mm [NiftyReg F3D] Initial objective function: 0.78842 = (wSIM)0.793976 - (wBE)4.3764e-08 - (wLE)0 - (wL2)0 - (wJAC)0.00555682 [NiftyReg F3D] [9] Current objective function: 0.789539 = (wSIM)0.795065 - (wBE)2.51e-07 - (wJAC)5.52e-03 [+ 0.15 mm] [NiftyReg F3D] [20] Current objective function: 0.792259 = (wSIM)0.797812 - (wBE)5.48e-06 - (wJAC)5.55e-03 [+ 0.4965 mm] [NiftyReg F3D] [29] Current objective function: 0.793205 = (wSIM)0.798741 - (wBE)1.09e-05 - (wJAC)5.53e-03 [+ 0.15 mm] [NiftyReg F3D] [38] Current objective function: 0.795731 = (wSIM)0.801126 - (wBE)3.38e-05 - (wJAC)5.36e-03 [+ 0.2325 mm] [NiftyReg F3D] [47] Current objective function: 0.796233 = (wSIM)0.801559 - (wBE)3.62e-05 - (wJAC)5.29e-03 [+ 0.2325 mm] [NiftyReg F3D] [55] Current objective function: 0.796233 = (wSIM)0.801559 - (wBE)3.62e-05 - (wJAC)5.29e-03 [+ 0 mm] [NiftyReg F3D] Current registration level done [NiftyReg F3D] -------------------------------------------------- [NiftyReg F3D] ************************************************** [NiftyReg F3D] Current level: 3 / 3 [NiftyReg F3D] Current reference image [NiftyReg F3D] * image dimension: 256 x 256 x 48 x 1 [NiftyReg F3D] * image spacing: 0.0683594 x 0.0683594 x 0.3 mm [NiftyReg F3D] Current floating image [NiftyReg F3D] * image dimension: 228 x 160 x 264 x 1 [NiftyReg F3D] * image spacing: 0.05 x 0.05 x 0.05 mm [NiftyReg F3D] Current control point image [NiftyReg F3D] * image dimension: 9 x 9 x 8 [NiftyReg F3D] * image spacing: 3 x 3 x 3 mm [NiftyReg F3D] Initial objective function: 0.792609 = (wSIM)0.798066 - (wBE)5.57664e-05 - (wLE)0 - (wL2)0 - (wJAC)0.00540114 [NiftyReg F3D] [9] Current objective function: 0.794224 = (wSIM)0.799647 - (wBE)5.46e-05 - (wJAC)5.37e-03 [+ 0.3 mm] [NiftyReg F3D] [18] Current objective function: 0.7951 = (wSIM)0.800507 - (wBE)7.32e-05 - (wJAC)5.33e-03 [+ 0.3 mm] [NiftyReg F3D] [27] Current objective function: 0.795348 = (wSIM)0.800799 - (wBE)1.08e-04 - (wJAC)5.34e-03 [+ 0.3 mm] [NiftyReg F3D] [35] Current objective function: 0.795348 = (wSIM)0.800799 - (wBE)1.08e-04 - (wJAC)5.34e-03 [+ 0 mm] [NiftyReg F3D] Current registration level done [NiftyReg F3D] -------------------------------------------------- [NiftyReg F3D] Registration Performed in 0 min 57 sec [NiftyReg F3D] Have a good day ! Output of reg_resample -ref /data/testdata_AIDA/proc_data/sub-SPsT1c13m1/ses-P21/anat/sub-SPsT1c13m1_ses-P21_T2wBiasBet.nii.gz -flo /aida/lib/average_template_50.nii.gz -cpp /data/testdata_AIDA/proc_data/sub-SPsT1c13m1/ses-P21/anat/sub-SPsT1c13m1_ses-P21_T2wBiasBetMatrixBspline.nii -res /data/testdata_AIDA/proc_data/sub-SPsT1c13m1/ses-P21/anat/sub-SPsT1c13m1_ses-P21_T2wBiasBet_TemplateAllen.nii.gz: * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * Command line: reg_resample -ref /data/testdata_AIDA/proc_data/sub-SPsT1c13m1/ses-P21/anat/sub-SPsT1c13m1_ses-P21_T2wBiasBet.nii.gz -flo /aida/lib/average_template_50.nii.gz -cpp /data/testdata_AIDA/proc_data/sub-SPsT1c13m1/ses-P21/anat/sub-SPsT1c13m1_ses-P21_T2wBiasBetMatrixBspline.nii -res /data/testdata_AIDA/proc_data/sub-SPsT1c13m1/ses-P21/anat/sub-SPsT1c13m1_ses-P21_T2wBiasBet_TemplateAllen.nii.gz Parameters Reference image name: /data/testdata_AIDA/proc_data/sub-SPsT1c13m1/ses-P21/anat/sub-SPsT1c13m1_ses-P21_T2wBiasBet.nii.gz 256x256x48 voxels, 1 volumes 0.0683594x0.0683594x0.3 mm Floating image name: /aida/lib/average_template_50.nii.gz 228x160x264 voxels, 1 volumes 0.05x0.05x0.05 mm * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * [NiftyReg] Resampled image has been saved: /data/testdata_AIDA/proc_data/sub-SPsT1c13m1/ses-P21/anat/sub-SPsT1c13m1_ses-P21_T2wBiasBet_TemplateAllen.nii.gz Output of reg_resample -ref /data/testdata_AIDA/proc_data/sub-SPsT1c13m1/ses-P21/anat/sub-SPsT1c13m1_ses-P21_T2wBiasBet.nii.gz -flo /aida/lib/annoVolume.nii.gz -inter 0 -cpp /data/testdata_AIDA/proc_data/sub-SPsT1c13m1/ses-P21/anat/sub-SPsT1c13m1_ses-P21_T2wBiasBetMatrixBspline.nii -res /data/testdata_AIDA/proc_data/sub-SPsT1c13m1/ses-P21/anat/sub-SPsT1c13m1_ses-P21_T2wBiasBet_Anno_parental.nii.gz: * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * Command line: reg_resample -ref /data/testdata_AIDA/proc_data/sub-SPsT1c13m1/ses-P21/anat/sub-SPsT1c13m1_ses-P21_T2wBiasBet.nii.gz -flo /aida/lib/annoVolume.nii.gz -inter 0 -cpp /data/testdata_AIDA/proc_data/sub-SPsT1c13m1/ses-P21/anat/sub-SPsT1c13m1_ses-P21_T2wBiasBetMatrixBspline.nii -res /data/testdata_AIDA/proc_data/sub-SPsT1c13m1/ses-P21/anat/sub-SPsT1c13m1_ses-P21_T2wBiasBet_Anno_parental.nii.gz Parameters Reference image name: /data/testdata_AIDA/proc_data/sub-SPsT1c13m1/ses-P21/anat/sub-SPsT1c13m1_ses-P21_T2wBiasBet.nii.gz 256x256x48 voxels, 1 volumes 0.0683594x0.0683594x0.3 mm Floating image name: /aida/lib/annoVolume.nii.gz 228x160x264 voxels, 1 volumes 0.05x0.05x0.05 mm * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * [NiftyReg] Resampled image has been saved: /data/testdata_AIDA/proc_data/sub-SPsT1c13m1/ses-P21/anat/sub-SPsT1c13m1_ses-P21_T2wBiasBet_Anno_parental.nii.gz Output of reg_resample -ref /data/testdata_AIDA/proc_data/sub-SPsT1c13m1/ses-P21/anat/sub-SPsT1c13m1_ses-P21_T2wBiasBet.nii.gz -flo /aida/lib/annoVolume+2000_rsfMRI.nii.gz -inter 0 -cpp /data/testdata_AIDA/proc_data/sub-SPsT1c13m1/ses-P21/anat/sub-SPsT1c13m1_ses-P21_T2wBiasBetMatrixBspline.nii -res /data/testdata_AIDA/proc_data/sub-SPsT1c13m1/ses-P21/anat/sub-SPsT1c13m1_ses-P21_T2wBiasBet_AnnoSplit_parental.nii.gz: * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * Command line: reg_resample -ref /data/testdata_AIDA/proc_data/sub-SPsT1c13m1/ses-P21/anat/sub-SPsT1c13m1_ses-P21_T2wBiasBet.nii.gz -flo /aida/lib/annoVolume+2000_rsfMRI.nii.gz -inter 0 -cpp /data/testdata_AIDA/proc_data/sub-SPsT1c13m1/ses-P21/anat/sub-SPsT1c13m1_ses-P21_T2wBiasBetMatrixBspline.nii -res /data/testdata_AIDA/proc_data/sub-SPsT1c13m1/ses-P21/anat/sub-SPsT1c13m1_ses-P21_T2wBiasBet_AnnoSplit_parental.nii.gz Parameters Reference image name: /data/testdata_AIDA/proc_data/sub-SPsT1c13m1/ses-P21/anat/sub-SPsT1c13m1_ses-P21_T2wBiasBet.nii.gz 256x256x48 voxels, 1 volumes 0.0683594x0.0683594x0.3 mm Floating image name: /aida/lib/annoVolume+2000_rsfMRI.nii.gz 228x160x264 voxels, 1 volumes 0.05x0.05x0.05 mm * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * [NiftyReg] Resampled image has been saved: /data/testdata_AIDA/proc_data/sub-SPsT1c13m1/ses-P21/anat/sub-SPsT1c13m1_ses-P21_T2wBiasBet_AnnoSplit_parental.nii.gz Output of reg_resample -ref /data/testdata_AIDA/proc_data/sub-SPsT1c13m1/ses-P21/anat/sub-SPsT1c13m1_ses-P21_T2wBiasBet.nii.gz -flo /aida/lib/annotation_50CHANGEDanno.nii.gz -inter 0 -cpp /data/testdata_AIDA/proc_data/sub-SPsT1c13m1/ses-P21/anat/sub-SPsT1c13m1_ses-P21_T2wBiasBetMatrixBspline.nii -res /data/testdata_AIDA/proc_data/sub-SPsT1c13m1/ses-P21/anat/sub-SPsT1c13m1_ses-P21_T2wBiasBet_Anno.nii.gz: * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * Command line: reg_resample -ref /data/testdata_AIDA/proc_data/sub-SPsT1c13m1/ses-P21/anat/sub-SPsT1c13m1_ses-P21_T2wBiasBet.nii.gz -flo /aida/lib/annotation_50CHANGEDanno.nii.gz -inter 0 -cpp /data/testdata_AIDA/proc_data/sub-SPsT1c13m1/ses-P21/anat/sub-SPsT1c13m1_ses-P21_T2wBiasBetMatrixBspline.nii -res /data/testdata_AIDA/proc_data/sub-SPsT1c13m1/ses-P21/anat/sub-SPsT1c13m1_ses-P21_T2wBiasBet_Anno.nii.gz Parameters Reference image name: /data/testdata_AIDA/proc_data/sub-SPsT1c13m1/ses-P21/anat/sub-SPsT1c13m1_ses-P21_T2wBiasBet.nii.gz 256x256x48 voxels, 1 volumes 0.0683594x0.0683594x0.3 mm Floating image name: /aida/lib/annotation_50CHANGEDanno.nii.gz 228x160x264 voxels, 1 volumes 0.05x0.05x0.05 mm * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * [NiftyReg] Resampled image has been saved: /data/testdata_AIDA/proc_data/sub-SPsT1c13m1/ses-P21/anat/sub-SPsT1c13m1_ses-P21_T2wBiasBet_Anno.nii.gz Output of reg_resample -ref /data/testdata_AIDA/proc_data/sub-SPsT1c13m1/ses-P21/anat/sub-SPsT1c13m1_ses-P21_T2wBiasBet.nii.gz -flo /aida/lib/ARA_annotationR+2000.nii.gz -inter 0 -cpp /data/testdata_AIDA/proc_data/sub-SPsT1c13m1/ses-P21/anat/sub-SPsT1c13m1_ses-P21_T2wBiasBetMatrixBspline.nii -res /data/testdata_AIDA/proc_data/sub-SPsT1c13m1/ses-P21/anat/sub-SPsT1c13m1_ses-P21_T2wBiasBet_AnnoSplit.nii.gz: * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * Command line: reg_resample -ref /data/testdata_AIDA/proc_data/sub-SPsT1c13m1/ses-P21/anat/sub-SPsT1c13m1_ses-P21_T2wBiasBet.nii.gz -flo /aida/lib/ARA_annotationR+2000.nii.gz -inter 0 -cpp /data/testdata_AIDA/proc_data/sub-SPsT1c13m1/ses-P21/anat/sub-SPsT1c13m1_ses-P21_T2wBiasBetMatrixBspline.nii -res /data/testdata_AIDA/proc_data/sub-SPsT1c13m1/ses-P21/anat/sub-SPsT1c13m1_ses-P21_T2wBiasBet_AnnoSplit.nii.gz Parameters Reference image name: /data/testdata_AIDA/proc_data/sub-SPsT1c13m1/ses-P21/anat/sub-SPsT1c13m1_ses-P21_T2wBiasBet.nii.gz 256x256x48 voxels, 1 volumes 0.0683594x0.0683594x0.3 mm Floating image name: /aida/lib/ARA_annotationR+2000.nii.gz 228x160x264 voxels, 1 volumes 0.05x0.05x0.05 mm * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * [NiftyReg] Resampled image has been saved: /data/testdata_AIDA/proc_data/sub-SPsT1c13m1/ses-P21/anat/sub-SPsT1c13m1_ses-P21_T2wBiasBet_AnnoSplit.nii.gz Registration completed