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2024_Ruthe_SND
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arefks 3321dce0e3 volcano plots 2 weeks ago
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4Presentation 150a909027 finished first stage poster 2 months ago
Bilder_Luca_BA 61a852543a I added all my images from the thesis as PDFs 6 months ago
Correlation_with_behavior e1c2b12287 visu jobs 2 weeks ago
Figures 3321dce0e3 volcano plots 2 weeks ago
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IncidenceMap 6967072929 latest stuf 3 weeks ago
MaskComparisons 9bcdec0ea4 added overlap percentage csv 7 months ago
Quantitative_outputs d1c8a8c45b code to filter high initital impairments 2 weeks ago
Tabels 4c54136454 Adjusted figure sizes 3 weeks ago
Tract_Density_Map 3a7f02f1c4 temp 8 months ago
Tract_Density_Map_registered 0013120323 hmmm 2 months ago
Tract_Mask_NIFTI c5875af414 added white matter mask 7 months ago
Tract_Mask_registered 1cd13fc10c added amba regoins to the mix 1 month ago
Tract_Mask_registered_with_allan_regions 1cd13fc10c added amba regoins to the mix 1 month ago
Tract_Mask_tt 8634e48d2c [DATALAD] Recorded changes 7 months ago
Viral_tracing_flipped 2e82796756 added viraltracin 2 mtpl space filp function 9 months ago
behavior_analysis 6dffb9e1e2 dti processing of quantitative values 1 month ago
del d0b1b3cf8b figure 1 paper 1 month ago
quality_control_aidaqc 4cf036e11b removed bad qc data from merged with behavior csv 1 month ago
single_AMBA_regions_nifti 1cd13fc10c added amba regoins to the mix 1 month ago
C57BL6_mouse.iso_registerd.nii.gz 45782701c4 updated input and output 10 months ago
Overlap_metrics_of_VT_and_dwi_masks.csv 9bcdec0ea4 added overlap percentage csv 7 months ago
README.md a0f2377f45 I updated the READme file for Outputs 9 months ago
affineTrafo.txt 45782701c4 updated input and output 10 months ago

README.md

Outputs

  • Nifti_Trakte: Contains all manually drawn masks created with DSI Studio.
  • Nifti_Trakte_registered: Contains the masks registered to our in-house MRI template (MTPL). This registration was performed manually using reg_aladin and reg_resample.
  • affineTrafo.txt: This is the output transformation matrix generated by reg_aladin during the registration of the C57BL6_mouse.iso.nii.gz file to the NP_template_sc0.nii.gz.
  • C57BL6_mouse.iso_registered.nii.gz: This is the output image created by reg_aladin when registering the C57BL6_mouse.iso.nii.gz file to the NP_template_sc0.nii.gz.
  • Nifti_Trakte_V2: These are the updated tracts (NV).
  • Tract_Density: This folder contains the density of each generated tract mask, saved from DSI-Studio.