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2024_Ruthe_SND
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2024_Ruthe_SND
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output
arefks 14120a0458 added word figure doc преди 1 седмица
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4Presentation 150a909027 finished first stage poster преди 2 месеца
Bilder_Luca_BA 61a852543a I added all my images from the thesis as PDFs преди 6 месеца
Correlation_with_behavior e1c2b12287 visu jobs преди 2 седмици
Figures 14120a0458 added word figure doc преди 1 седмица
ImageJ e61376a090 Merge remote-tracking branch 'origin/master' преди 2 месеца
IncidenceMap 6967072929 latest stuf преди 3 седмици
MaskComparisons 9bcdec0ea4 added overlap percentage csv преди 7 месеца
Quantitative_outputs d1c8a8c45b code to filter high initital impairments преди 2 седмици
Tabels 4c54136454 Adjusted figure sizes преди 3 седмици
Tract_Density_Map 3a7f02f1c4 temp преди 8 месеца
Tract_Density_Map_registered 0013120323 hmmm преди 2 месеца
Tract_Mask_NIFTI c5875af414 added white matter mask преди 7 месеца
Tract_Mask_registered 1cd13fc10c added amba regoins to the mix преди 1 месец
Tract_Mask_registered_with_allan_regions 1cd13fc10c added amba regoins to the mix преди 1 месец
Tract_Mask_tt 8634e48d2c [DATALAD] Recorded changes преди 7 месеца
Viral_tracing_flipped 2e82796756 added viraltracin 2 mtpl space filp function преди 9 месеца
behavior_analysis 6dffb9e1e2 dti processing of quantitative values преди 1 месец
del d0b1b3cf8b figure 1 paper преди 1 месец
quality_control_aidaqc 4cf036e11b removed bad qc data from merged with behavior csv преди 1 месец
single_AMBA_regions_nifti 1cd13fc10c added amba regoins to the mix преди 1 месец
C57BL6_mouse.iso_registerd.nii.gz 45782701c4 updated input and output преди 10 месеца
Overlap_metrics_of_VT_and_dwi_masks.csv 9bcdec0ea4 added overlap percentage csv преди 7 месеца
README.md a0f2377f45 I updated the READme file for Outputs преди 9 месеца
affineTrafo.txt 45782701c4 updated input and output преди 10 месеца

README.md

Outputs

  • Nifti_Trakte: Contains all manually drawn masks created with DSI Studio.
  • Nifti_Trakte_registered: Contains the masks registered to our in-house MRI template (MTPL). This registration was performed manually using reg_aladin and reg_resample.
  • affineTrafo.txt: This is the output transformation matrix generated by reg_aladin during the registration of the C57BL6_mouse.iso.nii.gz file to the NP_template_sc0.nii.gz.
  • C57BL6_mouse.iso_registered.nii.gz: This is the output image created by reg_aladin when registering the C57BL6_mouse.iso.nii.gz file to the NP_template_sc0.nii.gz.
  • Nifti_Trakte_V2: These are the updated tracts (NV).
  • Tract_Density: This folder contains the density of each generated tract mask, saved from DSI-Studio.